Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.04G231451 Glycine max HOM05D002607 ORTHO05D046732 5.1e-66 254.2 124 100.0
Phvul.009G049500 Phaseolus vulgaris HOM05D002607 ORTHO05D008816 1.3e-48 196.4 146 68.5
VMungo1309G1480 Vigna mungo HOM05D002607 ORTHO05D008816 1.3e-48 196.4 146 69.2
Lj1g0027320 Lotus japonicus HOM05D002607 ORTHO05D008816 5.0e-45 184.5 147 67.3
Psat5g074040 Pisum sativum HOM05D002607 ORTHO05D008816 1.1e-36 156.8 140 60.7
QL09p007481 Quercus lobata HOM05D002607 ORTHO05D008816 1.9e-36 156.0 134 60.4
Medtr3g092140 Medicago truncatula HOM05D002607 ORTHO05D008816 3.2e-36 155.2 142 59.2
CANSAT21G2327 Cannabis sativa HOM05D002607 ORTHO05D008816 4.2e-36 154.8 129 62.0
TPR.G33625 Trifolium pratense HOM05D002607 ORTHO05D008816 4.2e-36 154.8 149 58.4
Cc02_g01020 Coffea canephora HOM05D002607 ORTHO05D008816 9.4e-36 153.7 123 62.6
arahy.Tifrunner.gnm1.ann1.U4FEQP Arachis hypogaea HOM05D002607 ORTHO05D008816 1.2e-35 153.3 148 59.5
Lalb_Chr08g0239871 Lupinus albus HOM05D002607 ORTHO05D008816 1.6e-35 152.9 143 58.0
MD07G1296900 Malus domestica HOM05D002607 ORTHO05D008816 1.6e-35 152.9 128 59.4
arahy.Tifrunner.gnm1.ann1.8G77UE Arachis hypogaea HOM05D002607 ORTHO05D008816 3.6e-35 151.8 148 58.8
Nitab4.5_0007028g0040 Nicotiana tabacum HOM05D002607 ORTHO05D008816 3.6e-35 151.8 134 59.7
Oeu061016.2 Olea europaea HOM05D002607 ORTHO05D008816 6.1e-35 151.0 138 57.2
CAN.G1527.9 Capsicum annuum HOM05D002607 ORTHO05D008816 7.9e-35 150.6 142 57.7
MSTRG.26994 Avicennia marina HOM05D002607 ORTHO05D008816 1.0e-34 150.2 138 57.2
Cpa.g.sc3.137 Carica papaya HOM05D002607 ORTHO05D008816 1.0e-34 150.2 143 57.3
PGSC0003DMG400018510 Solanum tuberosum HOM05D002607 ORTHO05D008816 1.0e-34 150.2 134 59.0
Nitab4.5_0000319g0330 Nicotiana tabacum HOM05D002607 ORTHO05D008816 1.4e-34 149.8 127 61.4
Solyc03g082560.3 Solanum lycopersicum HOM05D002607 ORTHO05D008816 1.4e-34 149.8 127 61.4
Sopen03g022320 Solanum pennellii HOM05D002607 ORTHO05D008816 1.4e-34 149.8 127 61.4
Haze_00272 Corylus avellana HOM05D002607 ORTHO05D008816 1.8e-34 149.4 134 58.2
Thecc.03G205900 Theobroma cacao HOM05D002607 ORTHO05D008816 1.8e-34 149.4 142 56.3
vmacro10150 Vaccinium macrocarpon HOM05D002607 ORTHO05D008816 1.8e-34 149.4 126 60.3
BcaC04g20433 Brassica carinata HOM05D002607 ORTHO05D008816 2.3e-34 149.1 122 63.1
BolC9t57233H Brassica oleracea HOM05D002607 ORTHO05D008816 2.3e-34 149.1 122 63.1
AL8G28310 Arabidopsis lyrata HOM05D002607 ORTHO05D008816 3.0e-34 148.7 123 61.8
AT5G53580 Arabidopsis thaliana HOM05D002607 ORTHO05D008816 3.0e-34 148.7 135 58.5
CSS0016040 Camellia sinensis var. sinensis HOM05D002607 ORTHO05D008816 3.0e-34 148.7 125 60.0
THA.LOC104799949 Tarenaya hassleriana HOM05D002607 ORTHO05D008816 3.0e-34 148.7 136 57.4
Atru.chr12.2355 Acer truncatum HOM05D002607 ORTHO05D008816 5.1e-34 147.9 121 62.0
C09p43470 Brassica napus HOM05D002607 ORTHO05D008816 5.1e-34 147.9 122 62.3
Carub.0008s1375 Capsella rubella HOM05D002607 ORTHO05D008816 5.1e-34 147.9 135 57.8
Gohir.D08G114400 Gossypium hirsutum HOM05D002607 ORTHO05D008816 5.1e-34 147.9 126 61.1
Peaxi162Scf00740g00547 Petunia axillaris HOM05D002607 ORTHO05D008816 5.1e-34 147.9 135 58.5
Aa31LG3G9760 Aethionema arabicum HOM05D002607 ORTHO05D008816 6.7e-34 147.5 137 60.6
FvH4_7g32560 Fragaria vesca HOM05D002607 ORTHO05D008816 6.7e-34 147.5 125 59.2
RcHm_v2.0_Chr1g0382411 Rosa chinensis HOM05D002607 ORTHO05D008816 8.8e-34 147.1 125 60.0
AUR62035596 Chenopodium quinoa HOM05D002607 ORTHO05D008816 1.1e-33 146.7 125 60.0
BraA10t43194Z Brassica rapa HOM05D002607 ORTHO05D008816 1.5e-33 146.4 122 62.3
Cfa016180 Carpinus fangiana HOM05D002607 ORTHO05D008816 1.5e-33 146.4 134 57.5
Dinv29231 Davidia involucrata HOM05D002607 ORTHO05D008816 1.5e-33 146.4 129 59.7
FAN03G3022 Fragaria x ananassa HOM05D002607 ORTHO05D008816 1.5e-33 146.4 125 59.2
FAN01G2932 Fragaria x ananassa HOM05D002607 ORTHO05D008816 3.3e-33 145.2 125 58.4
Gorai.004G123200 Gossypium raimondii HOM05D002607 ORTHO05D008816 3.3e-33 145.2 126 60.3
Sc13g0010110 Simmondsia chinensis HOM05D002607 ORTHO05D008816 3.3e-33 145.2 143 53.1
Sp6g15720 Schrenkiella parvula HOM05D002607 ORTHO05D008816 4.4e-33 144.8 135 58.5
FAN10G2280 Fragaria x ananassa HOM05D002607 ORTHO05D008816 5.7e-33 144.4 125 58.4
EL10Ac3g05206 Beta vulgaris HOM05D002607 ORTHO05D008816 7.4e-33 144.1 123 59.3
A10p11020 Brassica napus HOM05D002607 ORTHO05D008816 7.4e-33 144.1 122 60.7
CiPaw.05G202100 Carya illinoinensis HOM05D002607 ORTHO05D008816 7.4e-33 144.1 129 56.6
Manes.01G038700 Manihot esculenta HOM05D001307 ORTHO05D001158 7.4e-33 144.1 129 58.1
Duzib068G0681 Durio zibethinus HOM05D002607 ORTHO05D008816 9.7e-33 143.7 125 59.2
Eucgr.A01423 Eucalyptus grandis HOM05D002607 ORTHO05D008816 9.7e-33 143.7 131 57.3
BcaB08g35726 Brassica carinata HOM05D002607 ORTHO05D008816 1.7e-32 142.9 124 60.5
Actinidia18676 Actinidia chinensis HOM05D002607 ORTHO05D008816 2.8e-32 142.1 122 59.0
PGR042G3609 Punica granatum HOM05D002607 ORTHO05D008816 3.7e-32 141.7 149 52.3
Ciclev10020720m.g Citrus clementina HOM05D002607 ORTHO05D008816 6.3e-32 141.0 122 59.0
Migut.F00165 Erythranthe guttata HOM05D002607 ORTHO05D008816 6.3e-32 141.0 137 54.0
FAN10G4015 Fragaria x ananassa HOM05D002607 ORTHO05D008816 6.3e-32 141.0 125 57.6
TWI79G0387 Tripterygium wilfordii HOM05D002607 ORTHO05D008816 1.4e-31 139.8 128 56.2
Thhalv10013893m.g Eutrema salsugineum HOM05D002607 ORTHO05D008816 1.8e-31 139.4 142 55.6
Glyma.06G133700 Glycine max HOM05D002607 ORTHO05D008816 1.8e-31 139.4 106 67.0
TAR636G3574 Trochodendron aralioides HOM05D002607 ORTHO05D008816 2.4e-31 139.0 127 56.7
AUR62006028 Chenopodium quinoa HOM05D002607 ORTHO05D008816 3.1e-31 138.7 125 56.8
Lsat_1_v5_gn_2_135080 Lactuca sativa HOM05D002607 ORTHO05D008816 5.3e-31 137.9 144 52.1
Sabra15G0005300 Salix brachista HOM05D002607 ORTHO05D008816 1.2e-30 136.7 119 58.8
SGA_v2.0_scaffold44G16835 Striga asiatica HOM05D002607 ORTHO05D008816 2.6e-30 135.6 123 56.1
ATR0620G030 Amborella trichopoda HOM05D002607 ORTHO05D008816 3.5e-30 135.2 116 56.9
Nn3g18811 Nelumbo nucifera HOM05D002607 ORTHO05D008816 3.5e-30 135.2 130 54.6
CsaV3_5G000210 Cucumis sativus L. HOM05D002607 ORTHO05D008816 4.5e-30 134.8 133 54.1
Potri.015G006900 Populus trichocarpa HOM05D002607 ORTHO05D008816 4.5e-30 134.8 119 58.8
SalBow4G2436 Salvia bowleyana HOM05D002607 ORTHO05D008816 4.5e-30 134.8 127 57.5
MELO3C005911.2 Cucumis melo HOM05D002607 ORTHO05D008816 7.7e-30 134.0 137 52.6
Aqoxy3G02807 Aquilegia oxysepala HOM05D002607 ORTHO05D008816 1.7e-29 132.9 130 55.4
Hund23696 Selenicereus undatus HOM05D002607 ORTHO05D008816 2.2e-29 132.5 121 55.4
Sed0028098 Sechium edule HOM05D002607 ORTHO05D008816 3.8e-29 131.7 142 53.5
ClCG01G000170 Citrullus lanatus HOM05D002607 ORTHO05D008816 5.0e-29 131.3 144 50.7
Os10g0517400 Oryza sativa ssp. japonica HOM05D002607 ORTHO05D008816 8.5e-29 130.6 116 56.0
PSO782G5500 Papaver somniferum HOM05D002607 ORTHO05D008816 1.1e-28 130.2 116 56.0
Lj3C898T8 Lonicera japonica HOM05D002607 ORTHO05D008816 2.5e-28 129.0 152 49.3
MBI04_g25308_MAGBIO Magnolia biondii HOM05D002607 ORTHO05D008816 2.5e-28 129.0 126 54.0
Zm00001eb220220 Zea mays HOM05D002607 ORTHO05D008816 4.2e-28 128.3 116 56.0
CDE04G1541 Ceratophyllum demersum HOM05D002607 ORTHO05D008816 7.2e-28 127.5 116 55.2
BcaB08g35725 Brassica carinata HOM05D002607 ORTHO05D008816 9.4e-28 127.1 131 55.7
Ah.07g204920 Amaranthus hybridus HOM05D002607 ORTHO05D008816 2.1e-27 125.9 106 60.4
Rhsim09G0208800 Rhododendron simsii HOM05D002607 ORTHO05D008816 3.6e-27 125.2 110 58.2
HanXRQChr14g0461651 Helianthus annuus HOM05D002607 ORTHO05D008816 4.7e-27 124.8 139 51.1
SMO165G0020 Selaginella moellendorffii HOM05D002607 ORTHO05D008816 1.4e-26 123.2 116 53.4
DCAR_008965 Daucus carota HOM05D002162 ORTHO05D008816 2.3e-26 122.5 106 58.5
COL.COLO4_14342 Corchorus olitorius HOM05D002607 ORTHO05D008816 3.0e-26 122.1 109 56.9
Gohir.A08G102800 Gossypium hirsutum HOM05D002607 ORTHO05D008816 1.5e-25 119.8 106 58.5
Mapoly0028s0033 Marchantia polymorpha HOM05D002607 ORTHO05D008816 1.7e-24 116.3 110 53.6
GSVIVG01038618001 Vitis vinifera HOM05D002607 ORTHO05D008816 2.2e-24 115.9 106 58.5
Prupe.2G316500 Prunus persica HOM05D002607 ORTHO05D008816 7.0e-23 110.9 97 57.7
AagrBONN_evm.TU.Sc2ySwM_117.2399 Anthoceros agrestis HOM05D002607 ORTHO05D008816 9.1e-23 110.5 114 48.2
ECA238G2492 Erigeron canadensis HOM05D002607 ORTHO05D008816 2.5e-20 102.4 112 52.7
Pp3c1_4350 Physcomitrium patens HOM05D002607 ORTHO05D008816 1.6e-19 99.8 109 50.5
CANSAT21G1405 Cannabis sativa HOM05D002607 ORTHO05D008816 1.8e-18 96.3 97 51.5
unitig_747.g21741 Utricularia gibba HOM05D002607 ORTHO05D008816 4.0e-18 95.1 61 72.1
Lsat_1_v5_gn_9_121420 Lactuca sativa HOM05D002607 ORTHO05D046732 2.6e-17 92.4 61 68.9
Cre04.g216350 Chlamydomonas reinhardtii HOM05D002607 ORTHO05D008816 1.6e-14 83.2 98 44.9
Duzib205G1178 Durio zibethinus HOM05D002607 ORTHO05D008816 1.2e-11 73.6 81 50.6
PRCOL_00004787 Prasinoderma coloniale HOM05D002607 ORTHO05D008816 2.7e-11 72.4 110 39.1
CANSAT21G1450 Cannabis sativa HOM05D002607 ORTHO05D008816 3.0e-10 68.9 74 50.0
SMO347G0009 Selaginella moellendorffii HOM05D002607 ORTHO05D006782 4.0e-10 68.6 119 38.7
Sabra05G0157600 Salix brachista HOM05D002607 ORTHO05D006782 9.8e-09 63.9 116 38.8
Ca_16751_v3 Cicer arietinum L. HOM05D002607 ORTHO05D008816 2.8e-08 62.4 45 66.7
Lalb_Chr03g0028891 Lupinus albus HOM05D002607 ORTHO05D006782 3.7e-08 62.0 107 41.1
MCO13G354 Micromonas commoda HOM05D002607 ORTHO05D008816 3.7e-08 62.0 93 43.0
Sc17g0004390 Simmondsia chinensis HOM05D002607 ORTHO05D006782 4.9e-08 61.6 117 37.6
Potri.005G207100 Populus trichocarpa HOM05D002607 ORTHO05D006782 6.3e-08 61.2 116 37.1
CANSAT64G2670 Cannabis sativa HOM05D002607 ORTHO05D006782 1.4e-07 60.1 135 36.3
Nn5g27900 Nelumbo nucifera HOM05D002607 ORTHO05D006782 1.4e-07 60.1 137 37.2
Os07g0143000 Oryza sativa ssp. japonica HOM05D002607 ORTHO05D006782 1.4e-07 60.1 116 37.1
Lj6g0003440 Lotus japonicus HOM05D002607 ORTHO05D006782 3.1e-07 58.9 106 39.6
PSO541G4938 Papaver somniferum HOM05D002607 ORTHO05D006782 3.1e-07 58.9 118 37.3
PSO675G8911 Papaver somniferum HOM05D002607 ORTHO05D006782 3.1e-07 58.9 118 37.3
Psat5g177840 Pisum sativum HOM05D002607 ORTHO05D006782 4.1e-07 58.5 116 37.1
Cfa023026 Carpinus fangiana HOM05D002607 ORTHO05D006782 5.4e-07 58.2 137 35.0
Haze_13604 Corylus avellana HOM05D002607 ORTHO05D006782 5.4e-07 58.2 137 35.0
TWI14G0804 Tripterygium wilfordii HOM05D002607 ORTHO05D006782 5.4e-07 58.2 116 37.1
Glyma.08G304000 Glycine max HOM05D002607 ORTHO05D006782 7.0e-07 57.8 117 36.8
TWI59G0100 Tripterygium wilfordii HOM05D002607 ORTHO05D006782 7.0e-07 57.8 116 37.9
Eucgr.A02042 Eucalyptus grandis HOM05D002607 ORTHO05D006782 1.2e-06 57.0 107 36.4
Glyma.18G115500 Glycine max HOM05D002607 ORTHO05D006782 1.2e-06 57.0 117 35.9
Os07g0142900 Oryza sativa ssp. japonica HOM05D002607 ORTHO05D006782 1.2e-06 57.0 115 34.8
GSVIVG01020815001 Vitis vinifera HOM05D002607 ORTHO05D006782 1.2e-06 57.0 108 38.0
Hund24405 Selenicereus undatus HOM05D002607 ORTHO05D006782 1.6e-06 56.6 117 36.8
Sc15g0002340 Simmondsia chinensis HOM05D002607 ORTHO05D006782 1.6e-06 56.6 118 36.4
FvH4_6g38930 Fragaria vesca HOM05D002607 ORTHO05D006782 2.0e-06 56.2 107 38.3
FAN14G5861 Fragaria x ananassa HOM05D002607 ORTHO05D006782 2.0e-06 56.2 107 38.3
RcHm_v2.0_Chr2g0152501 Rosa chinensis HOM05D002607 ORTHO05D006782 2.0e-06 56.2 107 38.3
FAN02G2725 Fragaria x ananassa HOM05D002607 ORTHO05D006782 2.7e-06 55.8 107 37.4
FAN09G4769 Fragaria x ananassa HOM05D002607 ORTHO05D006782 2.7e-06 55.8 107 37.4
QL04p060110 Quercus lobata HOM05D002607 ORTHO05D006782 2.7e-06 55.8 119 34.5
Cpa.g.sc47.55 Carica papaya HOM05D002607 ORTHO05D006782 3.5e-06 55.5 109 36.7
PGR042G0590 Punica granatum HOM05D002607 ORTHO05D006782 3.5e-06 55.5 127 37.0
SGA_v2.0_scaffold73G24442 Striga asiatica HOM05D002607 ORTHO05D006782 3.5e-06 55.5 116 36.2
Thecc.01G165800 Theobroma cacao HOM05D002607 ORTHO05D006782 3.5e-06 55.5 118 35.6
TAR626G1458 Trochodendron aralioides HOM05D002607 ORTHO05D006782 3.5e-06 55.5 110 37.3
unitig_699.g19632 Utricularia gibba HOM05D002607 ORTHO05D006782 3.5e-06 55.5 107 37.4
Aa31LG1G7730 Aethionema arabicum HOM05D002607 ORTHO05D006782 4.5e-06 55.1 116 36.2
ATR1098G119 Amborella trichopoda HOM05D002607 ORTHO05D006782 4.5e-06 55.1 116 36.2
Aqoxy4G00049 Aquilegia oxysepala HOM05D002607 ORTHO05D006782 4.5e-06 55.1 107 38.3
Phvul.006G028400 Phaseolus vulgaris HOM05D002607 ORTHO05D006782 4.5e-06 55.1 117 35.0
MSTRG.6610 Avicennia marina HOM05D002607 ORTHO05D006782 5.9e-06 54.7 117 34.2
Dinv18820 Davidia involucrata HOM05D002607 ORTHO05D006782 5.9e-06 54.7 108 37.0
Manes.01G131500 Manihot esculenta HOM05D002607 ORTHO05D006782 5.9e-06 54.7 115 37.4
Zm00001eb077890 Zea mays HOM05D002607 ORTHO05D006782 5.9e-06 54.7 115 34.8
CiPaw.03G198600 Carya illinoinensis HOM05D002607 ORTHO05D006782 7.7e-06 54.3 137 32.8
Ca_13946_v3 Cicer arietinum L. HOM05D002607 ORTHO05D006782 7.7e-06 54.3 105 38.1
Ciclev10031739m.g Citrus clementina HOM05D002607 ORTHO05D006782 7.7e-06 54.3 106 37.7
Cc05_g00290 Coffea canephora HOM05D002607 ORTHO05D006782 7.7e-06 54.3 105 38.1
Medtr3g449790 Medicago truncatula HOM05D002607 ORTHO05D006782 7.7e-06 54.3 106 38.7
Sopen07g023140 Solanum pennellii HOM05D002607 ORTHO05D006782 7.7e-06 54.3 109 37.6


User provided reference genes

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