Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.04G229850 Glycine max HOM05D000021 ORTHO05D008832 1.5e-39 165.6 79 100.0
Glyma.04G230500 Glycine max HOM05D000021 ORTHO05D000010 3.8e-22 107.8 69 78.3
Glyma.06G134700 Glycine max HOM05D000021 ORTHO05D000010 3.8e-22 107.8 71 77.5
Phvul.009G046900 Phaseolus vulgaris HOM05D000021 ORTHO05D000010 3.5e-20 101.3 91 57.1
Psat5g076440 Pisum sativum HOM05D000021 ORTHO05D000010 4.6e-20 100.9 72 68.1
Psat5g073360 Pisum sativum HOM05D000021 ORTHO05D000010 6.0e-20 100.5 72 68.1
VMungo1309G1774 Vigna mungo HOM05D000021 ORTHO05D000010 2.5e-18 95.1 72 66.7
Medtr3g092390 Medicago truncatula HOM05D000021 ORTHO05D000010 9.6e-18 93.2 71 64.8
Medtr3g092420 Medicago truncatula HOM05D000021 ORTHO05D000010 9.6e-18 93.2 71 63.4
TPR.G7143 Trifolium pratense HOM05D000021 ORTHO05D000010 1.6e-17 92.4 72 62.5
TPR.G28974 Trifolium pratense HOM05D000021 ORTHO05D008832 2.8e-17 91.7 72 62.5
Phvul.009G046600 Phaseolus vulgaris HOM05D000021 ORTHO05D000010 6.2e-17 90.5 67 67.2
Lj1g0024228 Lotus japonicus HOM05D000021 ORTHO05D000010 1.4e-16 89.4 72 68.1
VMungo1309G0549 Vigna mungo HOM05D000021 ORTHO05D000010 1.4e-16 89.4 70 65.7
arahy.Tifrunner.gnm1.ann1.MMGG0C Arachis hypogaea HOM05D000021 ORTHO05D000010 1.2e-12 76.3 66 54.5
arahy.Tifrunner.gnm1.ann1.41Z4IQ Arachis hypogaea HOM05D000021 ORTHO05D000010 1.6e-12 75.9 66 54.5
Thecc.04G214000 Theobroma cacao HOM05D000021 ORTHO05D000010 1.3e-11 72.8 46 65.2
COL.COLO4_05719 Corchorus olitorius HOM05D000021 ORTHO05D000010 1.1e-10 69.7 65 52.3
QL03p024295 Quercus lobata HOM05D000021 ORTHO05D000010 1.5e-10 69.3 46 63.0
Duzib268G0098 Durio zibethinus HOM05D000021 ORTHO05D000010 1.9e-10 68.9 46 60.9
Thecc.04G213900 Theobroma cacao HOM05D000021 ORTHO05D000010 1.9e-10 68.9 45 64.4
QL03p023328 Quercus lobata HOM05D000021 ORTHO05D000010 5.6e-10 67.4 46 60.9
Dinv41111 Davidia involucrata HOM05D000021 ORTHO05D000010 9.6e-10 66.6 48 58.3
QL03p024226 Quercus lobata HOM05D000021 ORTHO05D000010 9.6e-10 66.6 46 60.9
Thecc.04G214200 Theobroma cacao HOM05D000021 ORTHO05D000010 1.3e-09 66.2 46 60.9
CiPaw.15G019800 Carya illinoinensis HOM05D000021 ORTHO05D000010 1.6e-09 65.9 46 63.0
COL.COLO4_05714 Corchorus olitorius HOM05D000021 ORTHO05D008832 1.6e-09 65.9 46 63.0
TWI56G1145 Tripterygium wilfordii HOM05D000021 ORTHO05D000010 1.6e-09 65.9 66 47.0
COL.COLO4_33232 Corchorus olitorius HOM05D000021 ORTHO05D000010 2.8e-09 65.1 46 60.9
QL03p023399 Quercus lobata HOM05D000021 ORTHO05D000010 6.2e-09 63.9 46 58.7
THA.LOC104806039 Tarenaya hassleriana HOM05D000021 ORTHO05D000010 6.2e-09 63.9 74 50.0
GSVIVG01001656001 Vitis vinifera HOM05D000021 ORTHO05D000010 8.1e-09 63.5 45 60.0
Manes.18G089300 Manihot esculenta HOM05D000021 ORTHO05D000010 1.1e-08 63.2 64 53.1
CiPaw.15G020200 Carya illinoinensis HOM05D000021 ORTHO05D000010 1.4e-08 62.8 45 60.0
TWI60G0857 Tripterygium wilfordii HOM05D000021 ORTHO05D000010 1.8e-08 62.4 65 46.2
Eucgr.G00670 Eucalyptus grandis HOM05D000021 ORTHO05D000010 2.4e-08 62.0 46 56.5
Gohir.A05G316500 Gossypium hirsutum HOM05D000021 ORTHO05D000010 2.4e-08 62.0 47 55.3
Gorai.009G340400 Gossypium raimondii HOM05D000021 ORTHO05D000010 4.0e-08 61.2 47 55.3
CiPaw.15G020100 Carya illinoinensis HOM05D000021 ORTHO05D000010 5.3e-08 60.8 45 57.8
TAR540G0002 Trochodendron aralioides HOM05D000021 ORTHO05D000010 5.3e-08 60.8 47 55.3
Ciclev10010968m.g Citrus clementina HOM05D000021 ORTHO05D000010 6.9e-08 60.5 88 40.9
Gohir.D05G317800 Gossypium hirsutum HOM05D000021 ORTHO05D000010 6.9e-08 60.5 47 55.3
TAR625G0964 Trochodendron aralioides HOM05D000021 ORTHO05D000010 6.9e-08 60.5 47 55.3
CSS0003369 Camellia sinensis var. sinensis HOM05D000021 ORTHO05D000010 9.0e-08 60.1 94 37.2
PGR042G2071 Punica granatum HOM05D000021 ORTHO05D000010 9.0e-08 60.1 69 42.0
QL03p023439 Quercus lobata HOM05D000021 ORTHO05D000010 2.0e-07 58.9 46 52.2
QL03p024318 Quercus lobata HOM05D000021 ORTHO05D000010 2.0e-07 58.9 46 52.2
QL03p024349 Quercus lobata HOM05D000021 ORTHO05D000010 2.0e-07 58.9 46 52.2
Dinv34939 Davidia involucrata HOM05D000094 ORTHO05D002350 2.6e-07 58.5 39 64.1
Sc07g0003830 Simmondsia chinensis HOM05D000094 ORTHO05D002350 2.6e-07 58.5 46 56.5
Thecc.08G094300 Theobroma cacao HOM05D000021 ORTHO05D000010 3.4e-07 58.2 45 60.0
Eucgr.L00299 Eucalyptus grandis HOM05D000021 ORTHO05D000010 5.8e-07 57.4 46 52.2
HanXRQChr15g0488871 Helianthus annuus HOM05D000094 ORTHO05D002350 5.8e-07 57.4 65 52.3
CSS0045575 Camellia sinensis var. sinensis HOM05D000094 ORTHO05D002350 7.6e-07 57.0 39 61.5
DCAR_023116 Daucus carota HOM05D000021 ORTHO05D000010 7.6e-07 57.0 71 43.7
Eucgr.H03649 Eucalyptus grandis HOM05D000021 ORTHO05D000010 7.6e-07 57.0 46 50.0
Eucgr.L00190 Eucalyptus grandis HOM05D000021 ORTHO05D000010 7.6e-07 57.0 46 52.2
Nn3g16251 Nelumbo nucifera HOM05D000094 ORTHO05D002350 9.9e-07 56.6 45 60.0
TAR371G0501 Trochodendron aralioides HOM05D000094 ORTHO05D002350 9.9e-07 56.6 44 59.1
C03p13730 Brassica napus HOM05D000021 ORTHO05D000010 1.3e-06 56.2 58 51.7
Dinv33831 Davidia involucrata HOM05D000094 ORTHO05D002350 1.3e-06 56.2 39 61.5
Eucgr.L00181 Eucalyptus grandis HOM05D000021 ORTHO05D000010 1.3e-06 56.2 45 53.3
Gorai.011G285300 Gossypium raimondii HOM05D000021 ORTHO05D000010 1.3e-06 56.2 73 45.2
Manes.10G114450 Manihot esculenta HOM05D000021 ORTHO05D000010 1.3e-06 56.2 67 44.8
Potri.004G069001 Populus trichocarpa HOM05D000021 ORTHO05D000010 1.3e-06 56.2 45 53.3
PGR042G1887 Punica granatum HOM05D000021 ORTHO05D000010 1.3e-06 56.2 68 42.6
TAR383G0643 Trochodendron aralioides HOM05D000029 ORTHO05D008509 1.3e-06 56.2 51 47.1
GSVIVG01034122001 Vitis vinifera HOM05D000021 ORTHO05D000010 1.3e-06 56.2 50 50.0
C09p69820 Brassica napus HOM05D000029 ORTHO05D008567 1.7e-06 55.8 68 44.1
BolC9t59726H Brassica oleracea HOM05D000029 ORTHO05D008567 1.7e-06 55.8 68 44.1
Cc08_g08650 Coffea canephora HOM05D000021 ORTHO05D000010 1.7e-06 55.8 69 40.6
Eucgr.L00213 Eucalyptus grandis HOM05D000021 ORTHO05D000010 1.7e-06 55.8 45 48.9
Manes.10G114126 Manihot esculenta HOM05D000021 ORTHO05D000010 1.7e-06 55.8 67 44.8
Potri.005G080000 Populus trichocarpa HOM05D000021 ORTHO05D000010 1.7e-06 55.8 78 38.5
Sabra05G0038700 Salix brachista HOM05D000021 ORTHO05D000010 1.7e-06 55.8 45 60.0
BcaC06g32408 Brassica carinata HOM05D000029 ORTHO05D008567 2.2e-06 55.5 69 43.5
A10p29440 Brassica napus HOM05D000029 ORTHO05D008567 2.2e-06 55.5 65 44.6
BraA10t44988Z Brassica rapa HOM05D000029 ORTHO05D008567 2.2e-06 55.5 65 44.6
CAN.G143.65 Capsicum annuum HOM05D000021 ORTHO05D000010 2.2e-06 55.5 47 51.1
Cc11_g02670 Coffea canephora HOM05D000021 ORTHO05D000010 2.2e-06 55.5 50 46.0
MELO3C024874.2 Cucumis melo HOM05D000094 ORTHO05D002350 2.2e-06 55.5 58 48.3
Eucgr.G00673 Eucalyptus grandis HOM05D000021 ORTHO05D000010 2.2e-06 55.5 44 52.3
Nn4g22115 Nelumbo nucifera HOM05D000094 ORTHO05D002350 2.2e-06 55.5 64 50.0
Prupe.6G074900 Prunus persica HOM05D000021 ORTHO05D000010 2.2e-06 55.5 53 49.1
Sabra06G0040000 Salix brachista HOM05D000029 ORTHO05D008567 2.2e-06 55.5 51 49.0
GSVIVG01032908001 Vitis vinifera HOM05D000094 ORTHO05D002350 2.2e-06 55.5 47 57.4
C08p31870 Brassica napus HOM05D000021 ORTHO05D000010 2.9e-06 55.1 49 53.1
Cc00_g00860 Coffea canephora HOM05D000021 ORTHO05D000010 2.9e-06 55.1 68 39.7
Eucgr.L00178 Eucalyptus grandis HOM05D000021 ORTHO05D000010 2.9e-06 55.1 45 48.9
Eucgr.L00313 Eucalyptus grandis HOM05D000021 ORTHO05D000010 2.9e-06 55.1 62 46.8
MD00G1105400 Malus domestica HOM05D000021 ORTHO05D000010 2.9e-06 55.1 75 37.3
Nn5g28659 Nelumbo nucifera HOM05D000021 ORTHO05D000010 2.9e-06 55.1 47 51.1
PSO017G6809 Papaver somniferum HOM05D000071 ORTHO05D003524 2.9e-06 55.1 51 51.0
Potri.004G060100 Populus trichocarpa HOM05D000021 ORTHO05D000010 2.9e-06 55.1 45 60.0
Potri.006G056600 Populus trichocarpa HOM05D000029 ORTHO05D008567 2.9e-06 55.1 51 49.0
Potri.016G051600 Populus trichocarpa HOM05D000029 ORTHO05D008567 2.9e-06 55.1 40 60.0
QL06p037979 Quercus lobata HOM05D000029 ORTHO05D000854 2.9e-06 55.1 48 47.9
SGA_v2.0_scaffold52G19138 Striga asiatica HOM05D000094 ORTHO05D002350 2.9e-06 55.1 67 44.8
TAR371G1258 Trochodendron aralioides HOM05D000094 ORTHO05D002350 2.9e-06 55.1 39 56.4
Actinidia30317 Actinidia chinensis HOM05D000033 ORTHO05D004067 3.8e-06 54.7 61 44.3
C03p13700 Brassica napus HOM05D000021 ORTHO05D000010 3.8e-06 54.7 58 50.0
BolC3t13820H Brassica oleracea HOM05D000021 ORTHO05D000010 3.8e-06 54.7 52 51.9
CSS0002810 Camellia sinensis var. sinensis HOM05D000021 ORTHO05D000010 3.8e-06 54.7 67 41.8
CSS0012325 Camellia sinensis var. sinensis HOM05D000021 ORTHO05D000010 3.8e-06 54.7 95 38.9
CiPaw.04G055400 Carya illinoinensis HOM05D000094 ORTHO05D002350 3.8e-06 54.7 50 50.0
Cc03_g14050 Coffea canephora HOM05D000021 ORTHO05D000010 3.8e-06 54.7 69 40.6
Haze_18096 Corylus avellana HOM05D000021 ORTHO05D000010 3.8e-06 54.7 68 45.6
Lalb_Chr13g0295771 Lupinus albus HOM05D000021 ORTHO05D000010 3.8e-06 54.7 46 54.3
Nn1g08503 Nelumbo nucifera HOM05D000021 ORTHO05D000010 3.8e-06 54.7 65 41.5
PSO017G0140 Papaver somniferum HOM05D007057 ORTHO05D008878 3.8e-06 54.7 77 44.2
ATR0618G443 Amborella trichopoda HOM05D000021 ORTHO05D000010 4.9e-06 54.3 52 57.7
Ciclev10004039m.g Citrus clementina HOM05D000021 ORTHO05D000010 4.9e-06 54.3 56 46.4
Ciclev10030614m.g Citrus clementina HOM05D000021 ORTHO05D000010 4.9e-06 54.3 68 41.2
Cc00_g16560 Coffea canephora HOM05D000021 ORTHO05D000010 4.9e-06 54.3 72 40.3
Cc08_g08660 Coffea canephora HOM05D000021 ORTHO05D000010 4.9e-06 54.3 69 40.6
Eucgr.L00196 Eucalyptus grandis HOM05D000021 ORTHO05D000010 4.9e-06 54.3 67 41.8
QL10p043652 Quercus lobata HOM05D000021 ORTHO05D000010 4.9e-06 54.3 47 46.8
SEGI_31292 Sequoiadendron giganteum HOM05D000021 ORTHO05D000010 4.9e-06 54.3 55 47.3
Sopen03g014400 Solanum pennellii HOM05D000094 ORTHO05D002350 4.9e-06 54.3 59 44.1
C03p13760 Brassica napus HOM05D000021 ORTHO05D000010 6.4e-06 53.9 71 45.1
BraA03t10926Z Brassica rapa HOM05D000021 ORTHO05D000010 6.4e-06 53.9 58 48.3
DCAR_004472 Daucus carota HOM05D000191 ORTHO05D000122 6.4e-06 53.9 69 39.1
DCAR_025434 Daucus carota HOM05D000094 ORTHO05D002350 6.4e-06 53.9 39 59.0
Eucgr.L00221 Eucalyptus grandis HOM05D000021 ORTHO05D000010 6.4e-06 53.9 45 48.9
MBI10_g08052_MAGBIO Magnolia biondii HOM05D000021 ORTHO05D000010 6.4e-06 53.9 69 44.9
Manes.07G027500 Manihot esculenta HOM05D000021 ORTHO05D000010 6.4e-06 53.9 63 41.3
Manes.10G114800 Manihot esculenta HOM05D000021 ORTHO05D000010 6.4e-06 53.9 68 41.2
Thecc.09G046300 Theobroma cacao HOM05D000029 ORTHO05D008509 6.4e-06 53.9 59 40.7
BcaB01g04576 Brassica carinata HOM05D000021 ORTHO05D000010 8.4e-06 53.5 49 53.1
BcaC01g06523 Brassica carinata HOM05D000021 ORTHO05D016122 8.4e-06 53.5 52 51.9
BcaC09g48434 Brassica carinata HOM05D000021 ORTHO05D000010 8.4e-06 53.5 71 45.1
CSS0035895 Camellia sinensis var. sinensis HOM05D000021 ORTHO05D000010 8.4e-06 53.5 86 38.4
CAN.G525.61 Capsicum annuum HOM05D000021 ORTHO05D000010 8.4e-06 53.5 55 43.6
CiPaw.14G109100 Carya illinoinensis HOM05D000021 ORTHO05D000010 8.4e-06 53.5 47 48.9
Ciclev10026982m.g Citrus clementina HOM05D000021 ORTHO05D000010 8.4e-06 53.5 53 50.9
Cc00_g11270 Coffea canephora HOM05D000021 ORTHO05D000010 8.4e-06 53.5 69 40.6
COL.COLO4_14556 Corchorus olitorius HOM05D000021 ORTHO05D000010 8.4e-06 53.5 47 48.9
Gohir.A09G009300 Gossypium hirsutum HOM05D000094 ORTHO05D002350 8.4e-06 53.5 54 48.1
HanXRQChr17g0546061 Helianthus annuus HOM05D000094 ORTHO05D002350 8.4e-06 53.5 61 47.5
Manes.10G114650 Manihot esculenta HOM05D000021 ORTHO05D000010 8.4e-06 53.5 67 41.8
Os11g0208900 Oryza sativa ssp. japonica HOM05D000021 ORTHO05D000010 8.4e-06 53.5 58 48.3
PGR042G2714 Punica granatum HOM05D000021 ORTHO05D000010 8.4e-06 53.5 70 40.0
Solyc03g059490.1 Solanum lycopersicum HOM05D000094 ORTHO05D002350 8.4e-06 53.5 59 44.1
PGSC0003DMG400020833 Solanum tuberosum HOM05D000021 ORTHO05D000010 8.4e-06 53.5 91 38.5


User provided reference genes

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