Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.04G222500 Glycine max HOM05D004173 ORTHO05D004885 1.8e-136 489.2 242 100.0
Glyma.06G142900 Glycine max HOM05D004173 ORTHO05D004885 8.0e-108 394.0 250 81.6
Phvul.009G044100 Phaseolus vulgaris HOM05D004173 ORTHO05D004885 3.9e-86 322.0 239 69.9
VMungo1309G0457 Vigna mungo HOM05D004173 ORTHO05D004885 7.3e-85 317.8 238 71.4
Ca_16866_v3 Cicer arietinum L. HOM05D004173 ORTHO05D004885 9.9e-74 280.8 248 64.1
Ca_29953_v3 Cicer arietinum L. HOM05D004173 ORTHO05D004885 9.9e-74 280.8 248 64.1
arahy.Tifrunner.gnm1.ann1.7F477P Arachis hypogaea HOM05D004173 ORTHO05D004885 1.1e-72 277.3 258 63.2
Lalb_Chr23g0272221 Lupinus albus HOM05D004173 ORTHO05D004885 1.2e-71 273.9 257 60.3
Psat5g068840 Pisum sativum HOM05D004173 ORTHO05D004885 5.6e-69 265.0 245 60.0
Lj1g0005357 Lotus japonicus HOM05D004173 ORTHO05D004885 3.1e-67 259.2 243 61.7
Medtr3g093970 Medicago truncatula HOM05D004173 ORTHO05D004885 2.0e-66 256.5 246 59.8
TPR.G1732 Trifolium pratense HOM05D004173 ORTHO05D004885 2.6e-66 256.1 240 60.0
Lalb_Chr23g0272201 Lupinus albus HOM05D004173 ORTHO05D004885 1.7e-65 253.4 255 58.0
MD01G1167600 Malus domestica HOM05D004173 ORTHO05D004885 3.2e-48 196.1 247 46.2
RcHm_v2.0_Chr1g0372231 Rosa chinensis HOM05D004173 ORTHO05D004885 4.3e-45 185.7 243 47.3
Sp6g37580 Schrenkiella parvula HOM05D004173 ORTHO05D004885 4.3e-45 185.7 170 55.9
Potri.019G058000 Populus trichocarpa HOM05D004173 ORTHO05D004885 1.3e-44 184.1 213 48.8
Manes.07G143600 Manihot esculenta HOM05D004173 ORTHO05D004885 2.2e-44 183.3 155 60.6
Manes.07G141000 Manihot esculenta HOM05D004173 ORTHO05D004885 8.2e-44 181.4 155 60.6
MD07G1233600 Malus domestica HOM05D004173 ORTHO05D004885 1.1e-43 181.0 248 44.8
FAN10G3668 Fragaria x ananassa HOM05D004173 ORTHO05D004885 1.4e-43 180.6 256 47.3
Atru.chr12.182 Acer truncatum HOM05D004173 ORTHO05D004885 1.8e-43 180.3 250 43.6
THA.LOC104813511 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 2.4e-43 179.9 255 44.3
Ciclev10032642m.g Citrus clementina HOM05D004173 ORTHO05D004885 4.1e-43 179.1 201 46.8
FAN03G3439 Fragaria x ananassa HOM05D004173 ORTHO05D004885 9.1e-43 177.9 174 55.7
C09p71450 Brassica napus HOM05D004173 ORTHO05D004885 1.5e-42 177.2 168 55.4
BolC9t59908H Brassica oleracea HOM05D004173 ORTHO05D004885 1.5e-42 177.2 168 55.4
FvH4_7g25910 Fragaria vesca HOM05D004173 ORTHO05D004885 2.6e-42 176.4 258 45.7
FAN06G1323 Fragaria x ananassa HOM05D004173 ORTHO05D004885 2.6e-42 176.4 258 45.7
Prupe.2G264000 Prunus persica HOM05D004173 ORTHO05D004885 2.6e-42 176.4 251 43.8
BolC8t50789H Brassica oleracea HOM05D004173 ORTHO05D004885 7.7e-42 174.9 237 44.3
CSS0045557 Camellia sinensis var. sinensis HOM05D004173 ORTHO05D004885 1.0e-41 174.5 234 44.0
A10p30940 Brassica napus HOM05D004173 ORTHO05D004885 1.3e-41 174.1 168 53.6
BraA10t45139Z Brassica rapa HOM05D004173 ORTHO05D004885 1.3e-41 174.1 168 53.6
CARHR207980 Cardamine hirsuta HOM05D004173 ORTHO05D004885 1.3e-41 174.1 152 57.2
AL6G15090 Arabidopsis lyrata HOM05D004173 ORTHO05D004885 1.7e-41 173.7 242 46.3
Cfa001210 Carpinus fangiana HOM05D004173 ORTHO05D004885 2.9e-41 172.9 160 59.4
CARHR166510 Cardamine hirsuta HOM05D004173 ORTHO05D004885 3.8e-41 172.6 252 44.0
Cpa.g.sc19.59 Carica papaya HOM05D004173 ORTHO05D004885 5.0e-41 172.2 190 48.4
TWI73G0681 Tripterygium wilfordii HOM05D004173 ORTHO05D004885 5.0e-41 172.2 242 44.6
Sp5g06150 Schrenkiella parvula HOM05D004173 ORTHO05D004885 8.5e-41 171.4 254 42.5
THA.LOC104824365 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 1.9e-40 170.2 256 41.4
A09p49310 Brassica napus HOM05D004173 ORTHO05D004885 4.2e-40 169.1 215 46.0
BraA09t40385Z Brassica rapa HOM05D004173 ORTHO05D004885 4.2e-40 169.1 215 46.0
Eucgr.J00114 Eucalyptus grandis HOM05D004173 ORTHO05D004885 5.5e-40 168.7 160 53.8
AL5G37690 Arabidopsis lyrata HOM05D004173 ORTHO05D004885 1.2e-39 167.5 241 41.9
BcaC07g39948 Brassica carinata HOM05D004173 ORTHO05D004885 1.6e-39 167.2 231 44.6
C08p31680 Brassica napus HOM05D004173 ORTHO05D004885 1.6e-39 167.2 231 44.6
Thhalv10014558m.g Eutrema salsugineum HOM05D004173 ORTHO05D004885 2.1e-39 166.8 247 46.2
Thhalv10006215m.g Eutrema salsugineum HOM05D004173 ORTHO05D004885 2.7e-39 166.4 245 42.9
vmacro09960 Vaccinium macrocarpon HOM05D004173 ORTHO05D004885 4.7e-39 165.6 161 52.2
Carub.0006s0418 Capsella rubella HOM05D004173 ORTHO05D004885 6.1e-39 165.2 231 43.3
THA.LOC104826832 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 6.1e-39 165.2 185 50.3
Actinidia00999 Actinidia chinensis HOM05D004173 ORTHO05D004885 7.9e-39 164.9 233 43.8
Nitab4.5_0000171g0010 Nicotiana tabacum HOM05D004173 ORTHO05D004885 3.0e-38 162.9 154 54.5
AT5G05250 Arabidopsis thaliana HOM05D004173 ORTHO05D004885 6.7e-38 161.8 173 52.6
THA.LOC104803208 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 8.8e-38 161.4 249 43.0
Peaxi162Scf00739g00035 Petunia axillaris HOM05D004173 ORTHO05D004885 1.1e-37 161.0 156 52.6
Manes.10G001300 Manihot esculenta HOM05D004173 ORTHO05D004885 1.5e-37 160.6 149 54.4
Sed0028126 Sechium edule HOM05D004173 ORTHO05D004885 2.0e-37 160.2 237 40.9
Carub.0005s2314 Capsella rubella HOM05D004173 ORTHO05D004885 3.3e-37 159.5 252 41.7
Rhsim09G0185800 Rhododendron simsii HOM05D004173 ORTHO05D004885 3.3e-37 159.5 216 44.0
AT3G56360 Arabidopsis thaliana HOM05D004173 ORTHO05D004885 5.7e-37 158.7 245 41.6
Thecc.10G181100 Theobroma cacao HOM05D004173 ORTHO05D004885 9.7e-37 157.9 235 42.6
CANSAT25G2618 Cannabis sativa HOM05D004173 ORTHO05D004885 1.7e-36 157.1 235 42.1
MELO3C020007.2 Cucumis melo HOM05D004173 ORTHO05D004885 2.2e-36 156.8 248 40.3
Dinv34482 Davidia involucrata HOM05D004173 ORTHO05D004885 2.2e-36 156.8 238 41.6
Migut.F00606 Erythranthe guttata HOM05D004173 ORTHO05D004885 2.2e-36 156.8 156 49.4
CAN.G24.14 Capsicum annuum HOM05D004173 ORTHO05D004885 4.8e-36 155.6 149 51.7
A04p03290 Brassica napus HOM05D004173 ORTHO05D004885 6.3e-36 155.2 218 44.5
BraA04t16106Z Brassica rapa HOM05D004173 ORTHO05D004885 8.2e-36 154.8 239 42.7
Hma1.2p1_0264F.1_g106180 Hydrangea macrophylla HOM05D004173 ORTHO05D004885 1.1e-35 154.5 252 39.7
Aa31LG11G6110 Aethionema arabicum HOM05D004173 ORTHO05D004885 1.4e-35 154.1 221 43.0
Oeu063983.1 Olea europaea HOM05D004173 ORTHO05D004885 1.8e-35 153.7 154 51.9
Aa31LG10G11250 Aethionema arabicum HOM05D004173 ORTHO05D004885 3.1e-35 152.9 256 40.2
BcaC06g32235 Brassica carinata HOM05D004173 ORTHO05D004885 3.1e-35 152.9 168 50.6
Duzib114G0418 Durio zibethinus HOM05D004173 ORTHO05D004885 4.1e-35 152.5 248 40.3
Gohir.A05G278500 Gossypium hirsutum HOM05D004173 ORTHO05D004885 4.1e-35 152.5 170 50.6
Gorai.009G293700 Gossypium raimondii HOM05D004173 ORTHO05D004885 5.3e-35 152.1 170 50.6
BcaC07g39950 Brassica carinata HOM05D004173 ORTHO05D004885 7.0e-35 151.8 171 51.5
CiPaw.01G306500 Carya illinoinensis HOM05D004173 ORTHO05D004885 7.0e-35 151.8 149 54.4
Gohir.D05G280200 Gossypium hirsutum HOM05D004173 ORTHO05D004885 7.0e-35 151.8 170 50.0
Duzib128G1795 Durio zibethinus HOM05D004173 ORTHO05D004885 9.1e-35 151.4 155 52.3
BcaC02g09832 Brassica carinata HOM05D004173 ORTHO05D004885 1.2e-34 151.0 216 44.0
C04p36060 Brassica napus HOM05D004173 ORTHO05D004885 1.2e-34 151.0 216 44.0
BolC4t25192H Brassica oleracea HOM05D004173 ORTHO05D004885 2.6e-34 149.8 216 43.5
Nitab4.5_0002279g0040 Nicotiana tabacum HOM05D004173 ORTHO05D004885 2.6e-34 149.8 163 47.9
BcaB02g08372 Brassica carinata HOM05D004173 ORTHO05D004885 5.9e-34 148.7 219 43.8
CsaV3_6G002310 Cucumis sativus L. HOM05D004173 ORTHO05D004885 5.9e-34 148.7 239 41.4
Solyc06g049020.1 Solanum lycopersicum HOM05D004173 ORTHO05D004885 1.0e-33 147.9 225 41.8
PGSC0003DMG400016638 Solanum tuberosum HOM05D004173 ORTHO05D004885 1.0e-33 147.9 151 52.3
CAN.G100.76 Capsicum annuum HOM05D004173 ORTHO05D004885 1.3e-33 147.5 227 41.0
SalBow3G3840 Salvia bowleyana HOM05D004173 ORTHO05D004885 1.3e-33 147.5 150 52.7
Sopen06g015380 Solanum pennellii HOM05D004173 ORTHO05D004885 1.3e-33 147.5 225 41.8
QL08p064831 Quercus lobata HOM05D004173 ORTHO05D004885 3.8e-33 146.0 244 41.8
Haze_17356 Corylus avellana HOM05D004173 ORTHO05D004885 5.0e-33 145.6 235 41.7
Peaxi162Scf00739g00036 Petunia axillaris HOM05D004173 ORTHO05D004885 5.0e-33 145.6 156 48.7
Sc10g0002990 Simmondsia chinensis HOM05D004173 ORTHO05D004885 5.0e-33 145.6 154 50.0
AUR62024933 Chenopodium quinoa HOM05D004173 ORTHO05D004885 2.1e-31 140.2 170 48.2
Ah.12g064380 Amaranthus hybridus HOM05D004173 ORTHO05D004885 4.7e-31 139.0 152 49.3
PGSC0003DMG400011642 Solanum tuberosum HOM05D004173 ORTHO05D004885 6.1e-31 138.7 215 41.4
Gohir.A13G006500 Gossypium hirsutum HOM05D004173 ORTHO05D004885 1.0e-30 137.9 160 48.1
PGR044G2104 Punica granatum HOM05D004173 ORTHO05D004885 4.0e-30 136.0 175 44.6
Gohir.D13G006700 Gossypium hirsutum HOM05D004173 ORTHO05D004885 1.1e-29 134.4 248 39.1
Gorai.013G006900 Gossypium raimondii HOM05D004173 ORTHO05D004885 2.0e-29 133.7 247 38.1
Peaxi162Scf00167g01213 Petunia axillaris HOM05D004173 ORTHO05D004885 2.6e-29 133.3 162 46.9
CAN.G203.54 Capsicum annuum HOM05D004173 ORTHO05D004885 9.7e-29 131.3 176 41.5
Nn5g26849 Nelumbo nucifera HOM05D004173 ORTHO05D004885 9.7e-29 131.3 170 40.6
SGA_v2.0_scaffold60G20889 Striga asiatica HOM05D004173 ORTHO05D004885 1.4e-27 127.5 163 47.2
DCAR_014665 Daucus carota HOM05D004173 ORTHO05D004885 7.0e-27 125.2 242 37.2
Gorai.012G014700 Gossypium raimondii HOM05D004173 ORTHO05D004885 9.1e-27 124.8 153 43.1
MBI18_g38876_MAGBIO Magnolia biondii HOM05D004173 ORTHO05D004885 1.2e-26 124.4 158 44.3
Sopen05g030770 Solanum pennellii HOM05D004173 ORTHO05D004885 1.2e-26 124.4 183 41.0
AUR62030611 Chenopodium quinoa HOM05D004173 ORTHO05D004885 2.0e-26 123.6 180 43.9
Cc10_g16360 Coffea canephora HOM05D004173 ORTHO05D004885 4.5e-26 122.5 165 42.4
Gohir.A05G403100 Gossypium hirsutum HOM05D004173 ORTHO05D004885 4.5e-26 122.5 109 53.2
Gohir.D04G012400 Gossypium hirsutum HOM05D004173 ORTHO05D004885 4.5e-26 122.5 153 42.5
Phvul.009G044000 Phaseolus vulgaris HOM05D004173 ORTHO05D004885 4.5e-26 122.5 66 83.3
Lsat_1_v5_gn_8_11461 Lactuca sativa HOM05D004173 ORTHO05D004885 1.7e-25 120.6 210 40.5
Nn2g10306 Nelumbo nucifera HOM05D004173 ORTHO05D004885 2.9e-25 119.8 169 42.0
unitig_37.g11910 Utricularia gibba HOM05D004173 ORTHO05D004885 6.5e-25 118.6 148 40.5
HPP92_012755 Vanilla planifolia HOM05D004173 ORTHO05D004885 8.5e-25 118.2 261 33.3
CSS0041127 Camellia sinensis var. sinensis HOM05D004173 ORTHO05D004885 1.1e-24 117.9 179 38.5
CSS0049649 Camellia sinensis var. sinensis HOM05D004173 ORTHO05D004885 1.1e-24 117.9 179 38.5
PSO675G3687 Papaver somniferum HOM05D004173 ORTHO05D004885 1.9e-24 117.1 178 41.6
ClCG11G005670 Citrullus lanatus HOM05D004173 ORTHO05D004885 2.5e-24 116.7 215 38.1
Dinv21845 Davidia involucrata HOM05D004173 ORTHO05D004885 2.5e-24 116.7 211 40.8
TAR365G1150 Trochodendron aralioides HOM05D004173 ORTHO05D004885 2.5e-24 116.7 172 41.9
TAR365G0355 Trochodendron aralioides HOM05D004173 ORTHO05D004885 3.2e-24 116.3 174 40.2
PSO266G0063 Papaver somniferum HOM05D004173 ORTHO05D004885 7.2e-24 115.2 181 40.3
PSO104G0082 Papaver somniferum HOM05D004173 ORTHO05D004885 9.4e-24 114.8 183 40.4
HanXRQChr08g0221561 Helianthus annuus HOM05D004173 ORTHO05D004885 1.6e-23 114.0 157 43.3
PSO478G3294 Papaver somniferum HOM05D004173 ORTHO05D004885 2.7e-23 113.2 181 40.9
Aqoxy5G02899 Aquilegia oxysepala HOM05D004173 ORTHO05D004885 3.6e-23 112.8 169 37.3
PSO421G0661 Papaver somniferum HOM05D004173 ORTHO05D004885 8.0e-23 111.7 181 39.8
HanXRQChr09g0252211 Helianthus annuus HOM05D004173 ORTHO05D004885 3.0e-22 109.8 149 45.6
PSO063G2850 Papaver somniferum HOM05D004173 ORTHO05D004885 4.0e-22 109.4 182 39.6
Oeu025786.2 Olea europaea HOM05D004173 ORTHO05D004885 6.8e-22 108.6 165 38.8
Zm00001eb215400 Zea mays HOM05D004173 ORTHO05D004885 6.8e-22 108.6 155 41.3
EL10Ac2g02643 Beta vulgaris HOM05D004173 ORTHO05D004885 5.7e-21 105.5 115 49.6
Lsat_1_v5_gn_9_60020 Lactuca sativa HOM05D004173 ORTHO05D004885 1.7e-20 104.0 160 44.4
Zm00001eb056440 Zea mays HOM05D004173 ORTHO05D004885 2.8e-20 103.2 224 33.5
Sc05g0006880 Simmondsia chinensis HOM05D004173 ORTHO05D004885 8.3e-20 101.7 212 35.4
Os03g0736900 Oryza sativa ssp. japonica HOM05D004173 ORTHO05D004885 1.4e-19 100.9 156 39.1
MSTRG.18054 Avicennia marina HOM05D004173 ORTHO05D004885 1.8e-19 100.5 169 37.9
Nitab4.5_0002846g0010 Nicotiana tabacum HOM05D004173 ORTHO05D004885 1.8e-19 100.5 101 54.5
ECA238G3313 Erigeron canadensis HOM05D004173 ORTHO05D004885 5.4e-19 99.0 160 40.0
CDE02G3998 Ceratophyllum demersum HOM05D004173 ORTHO05D004885 5.0e-17 92.4 148 35.8
Lsat_1_v5_gn_2_126200 Lactuca sativa HOM05D004173 ORTHO05D004885 8.5e-17 91.7 153 38.6
Lalb_Chr11g0067791 Lupinus albus HOM05D004173 ORTHO05D004885 2.5e-16 90.1 71 66.2
Ah.14g087000 Amaranthus hybridus HOM05D004173 ORTHO05D004885 2.7e-15 86.7 192 35.4
ATR0776G079 Amborella trichopoda HOM05D004173 ORTHO05D004885 1.8e-14 84.0 164 34.8
Actinidia07794 Actinidia chinensis HOM05D004173 ORTHO05D004885 4.0e-14 82.8 97 45.4
ATR0124G034 Amborella trichopoda HOM05D004173 ORTHO05D004885 4.0e-14 82.8 228 31.1
SEGI_03811 Sequoiadendron giganteum HOM05D004173 ORTHO05D004885 4.0e-14 82.8 170 34.1
Nitab4.5_0000375g0240 Nicotiana tabacum HOM05D004173 ORTHO05D004885 5.2e-14 82.4 86 50.0
SEGI_33270 Sequoiadendron giganteum HOM05D004173 ORTHO05D004885 8.8e-14 81.6 170 33.5
CDE04G1376 Ceratophyllum demersum HOM05D004173 ORTHO05D004885 1.4e-11 74.3 184 29.9
Rhsim10G0215400 Rhododendron simsii HOM05D000820 ORTHO05D016785 3.1e-11 73.2 94 45.7
Pp3c2_14400 Physcomitrium patens HOM05D004173 ORTHO05D004885 4.1e-11 72.8 167 35.3
CAN.G546.44 Capsicum annuum HOM05D004173 ORTHO05D004885 4.5e-10 69.3 100 39.0
Pp3c14_17300 Physcomitrium patens HOM05D004173 ORTHO05D004885 5.0e-09 65.9 183 28.4
Dinv05055 Davidia involucrata HOM05D004173 ORTHO05D004885 1.5e-08 64.3 78 44.9
Pp3c10_16350 Physcomitrium patens HOM05D004173 ORTHO05D004885 2.8e-07 60.1 153 30.7
ECA233G6175 Erigeron canadensis HOM05D004173 ORTHO05D004885 8.0e-07 58.5 94 34.0


User provided reference genes

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