Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.04G217900 Glycine max HOM05D000786 ORTHO05D006216 4.0e-44 181.0 91 100.0
Glyma.06G148000 Glycine max HOM05D000786 ORTHO05D006216 1.8e-31 139.0 93 83.9
Lalb_Chr08g0238761 Lupinus albus HOM05D000786 ORTHO05D006216 5.9e-19 97.4 85 67.1
Atru.chr4.724 Acer truncatum HOM05D000786 ORTHO05D006216 1.3e-18 96.3 83 68.7
COL.COLO4_03470 Corchorus olitorius HOM05D000786 ORTHO05D006216 1.7e-18 95.9 83 66.3
Manes.12G145200 Manihot esculenta HOM05D000786 ORTHO05D006216 1.4e-17 92.8 83 62.7
Ciclev10026866m.g Citrus clementina HOM05D000786 ORTHO05D006216 1.9e-17 92.4 83 68.7
Haze_25081 Corylus avellana HOM05D000786 ORTHO05D006216 1.9e-17 92.4 84 64.3
QL06p031416 Quercus lobata HOM05D000786 ORTHO05D006216 2.5e-17 92.0 83 61.4
Potri.007G077500 Populus trichocarpa HOM05D000786 ORTHO05D006216 4.2e-17 91.3 85 64.7
PGR119G2557 Punica granatum HOM05D000786 ORTHO05D006216 1.2e-16 89.7 83 66.3
Cfa002784 Carpinus fangiana HOM05D000786 ORTHO05D006216 1.6e-16 89.4 84 61.9
Hund03512 Selenicereus undatus HOM05D005778 ORTHO05D007245 3.6e-16 88.2 83 65.1
MD15G1335800 Malus domestica HOM05D000786 ORTHO05D006216 6.1e-16 87.4 85 61.2
Prupe.6G166900 Prunus persica HOM05D000786 ORTHO05D006216 6.1e-16 87.4 84 60.7
Sabra07G0065500 Salix brachista HOM05D000786 ORTHO05D006216 7.9e-16 87.0 84 61.9
CiPaw.03G131800 Carya illinoinensis HOM05D000786 ORTHO05D006216 1.8e-15 85.9 92 55.4
RcHm_v2.0_Chr2g0117891 Rosa chinensis HOM05D000786 ORTHO05D006216 3.0e-15 85.1 89 58.4
Sabra05G0071600 Salix brachista HOM05D000786 ORTHO05D006216 3.0e-15 85.1 83 59.0
FAN26G3223 Fragaria x ananassa HOM05D000786 ORTHO05D006216 1.1e-14 83.2 87 57.5
FAN19G0145 Fragaria x ananassa HOM05D000786 ORTHO05D006216 1.5e-14 82.8 87 57.5
FAN23G1700 Fragaria x ananassa HOM05D000786 ORTHO05D006216 1.5e-14 82.8 87 57.5
TAR381G0907 Trochodendron aralioides HOM05D000786 ORTHO05D006216 1.5e-14 82.8 84 63.1
FvH4_1g23170 Fragaria vesca HOM05D000786 ORTHO05D006216 1.9e-14 82.4 87 57.5
FAN28G3029 Fragaria x ananassa HOM05D000786 ORTHO05D006216 3.3e-14 81.6 87 56.3
ClCG01G015870 Citrullus lanatus HOM05D000786 ORTHO05D006216 5.7e-14 80.9 83 60.2
Hma1.2p1_0529F.1_g173260 Hydrangea macrophylla HOM05D000786 ORTHO05D006216 9.7e-14 80.1 84 56.0
SGA_v2.0_scaffold34G13633 Striga asiatica HOM05D000786 ORTHO05D006216 1.3e-13 79.7 86 57.0
DCAR_011463 Daucus carota HOM05D000786 ORTHO05D006216 2.8e-13 78.6 83 57.8
Dinv41045 Davidia involucrata HOM05D000786 ORTHO05D006216 3.7e-13 78.2 86 54.7
EL10Ac6g15224 Beta vulgaris HOM05D005778 ORTHO05D007245 4.8e-13 77.8 83 59.0
CSS0001280 Camellia sinensis var. sinensis HOM05D000786 ORTHO05D006216 4.8e-13 77.8 86 58.1
Cc07_g16650 Coffea canephora HOM05D000786 ORTHO05D006216 6.3e-13 77.4 83 57.8
Lsat_1_v5_gn_4_138400 Lactuca sativa HOM05D000786 ORTHO05D006216 6.3e-13 77.4 83 60.2
SalBow5G2955 Salvia bowleyana HOM05D000786 ORTHO05D006216 6.3e-13 77.4 83 55.4
HanXRQChr09g0254011 Helianthus annuus HOM05D000786 ORTHO05D006216 8.2e-13 77.0 83 59.0
Thecc.01G116900 Theobroma cacao HOM05D000786 ORTHO05D006216 8.2e-13 77.0 77 57.1
HanXRQChr15g0493541 Helianthus annuus HOM05D000786 ORTHO05D006216 1.1e-12 76.6 83 60.2
CsaV3_6G042150 Cucumis sativus L. HOM05D000786 ORTHO05D006216 1.4e-12 76.3 84 57.1
Sabra05G0149300 Salix brachista HOM05D000786 ORTHO05D006216 1.4e-12 76.3 83 57.8
Potri.005G195800 Populus trichocarpa HOM05D000786 ORTHO05D006216 1.8e-12 75.9 83 56.6
GSVIVG01034575001 Vitis vinifera HOM05D000786 ORTHO05D006216 1.8e-12 75.9 84 57.1
MELO3C007453.2 Cucumis melo HOM05D000786 ORTHO05D006216 2.4e-12 75.5 84 56.0
Manes.18G094200 Manihot esculenta HOM05D000786 ORTHO05D006216 2.4e-12 75.5 83 56.6
Potri.002G065200 Populus trichocarpa HOM05D000786 ORTHO05D006216 2.4e-12 75.5 83 56.6
CSS0019732 Camellia sinensis var. sinensis HOM05D000786 ORTHO05D006216 5.3e-12 74.3 83 55.4
Duzib116G0195 Durio zibethinus HOM05D000786 ORTHO05D006216 5.3e-12 74.3 83 56.6
MSTRG.3817 Avicennia marina HOM05D000786 ORTHO05D006216 6.9e-12 73.9 83 55.4
Cfa018290 Carpinus fangiana HOM05D000786 ORTHO05D006216 6.9e-12 73.9 83 55.4
Haze_17797 Corylus avellana HOM05D000786 ORTHO05D006216 6.9e-12 73.9 83 55.4
COL.COLO4_03364 Corchorus olitorius HOM05D000786 ORTHO05D006216 9.1e-12 73.6 83 55.4
MBI16_g14985_MAGBIO Magnolia biondii HOM05D000786 ORTHO05D006216 9.1e-12 73.6 84 58.3
Rhsim10G0146600 Rhododendron simsii HOM05D000786 ORTHO05D006216 9.1e-12 73.6 70 60.0
Rhsim10G0147300 Rhododendron simsii HOM05D000786 ORTHO05D006216 9.1e-12 73.6 70 60.0
FvH4_2g13100 Fragaria vesca HOM05D000786 ORTHO05D006216 1.2e-11 73.2 83 54.2
FAN15G3470 Fragaria x ananassa HOM05D000786 ORTHO05D006216 1.2e-11 73.2 83 54.2
FAN20G2557 Fragaria x ananassa HOM05D000786 ORTHO05D006216 1.2e-11 73.2 83 54.2
FAN24G2413 Fragaria x ananassa HOM05D000786 ORTHO05D006216 1.2e-11 73.2 83 54.2
FAN27G0158 Fragaria x ananassa HOM05D000786 ORTHO05D006216 1.2e-11 73.2 83 54.2
Thecc.08G158200 Theobroma cacao HOM05D000786 ORTHO05D006216 1.2e-11 73.2 83 55.4
unitig_0.g1746 Utricularia gibba HOM05D000786 ORTHO05D006216 1.5e-11 72.8 83 54.2
Cc10_g15160 Coffea canephora HOM05D000786 ORTHO05D006216 2.0e-11 72.4 84 52.4
Ciclev10003573m.g Citrus clementina HOM05D000786 ORTHO05D006216 3.4e-11 71.6 83 55.4
Dinv25892 Davidia involucrata HOM05D000786 ORTHO05D006216 4.5e-11 71.2 88 52.3
Gohir.A02G063100 Gossypium hirsutum HOM05D000786 ORTHO05D006216 4.5e-11 71.2 83 55.4
Gohir.D02G068800 Gossypium hirsutum HOM05D000786 ORTHO05D006216 4.5e-11 71.2 83 55.4
Gorai.005G077700 Gossypium raimondii HOM05D000786 ORTHO05D006216 4.5e-11 71.2 83 55.4
RcHm_v2.0_Chr6g0274371 Rosa chinensis HOM05D000786 ORTHO05D006216 5.9e-11 70.9 83 51.8
Actinidia17774 Actinidia chinensis HOM05D000786 ORTHO05D006216 7.7e-11 70.5 83 51.8
CANSAT25G1840 Cannabis sativa HOM05D000786 ORTHO05D006216 1.0e-10 70.1 83 54.2
Nn5g28813 Nelumbo nucifera HOM05D000786 ORTHO05D006216 1.0e-10 70.1 83 54.2
Migut.L00056 Erythranthe guttata HOM05D000786 ORTHO05D006216 1.3e-10 69.7 83 50.6
Prupe.8G039100 Prunus persica HOM05D000786 ORTHO05D006216 1.7e-10 69.3 83 50.6
QL02p038248 Quercus lobata HOM05D000786 ORTHO05D006216 1.7e-10 69.3 83 49.4
Atru.chr13.2022 Acer truncatum HOM05D000786 ORTHO05D006216 2.2e-10 68.9 83 54.2
unitig_747.g21813 Utricularia gibba HOM05D000786 ORTHO05D006216 2.2e-10 68.9 84 51.2
CSS0042693 Camellia sinensis var. sinensis HOM05D000786 ORTHO05D006216 2.9e-10 68.6 83 54.2
CAN.G495.6 Capsicum annuum HOM05D000786 ORTHO05D006216 2.9e-10 68.6 86 47.7
Oeu028354.1 Olea europaea HOM05D000786 ORTHO05D006216 2.9e-10 68.6 83 54.2
Cpa.g.sc49.82 Carica papaya HOM05D000786 ORTHO05D006216 3.8e-10 68.2 83 55.4
Oeu015843.1 Olea europaea HOM05D000786 ORTHO05D006216 3.8e-10 68.2 87 50.6
TWI34G1146 Tripterygium wilfordii HOM05D000786 ORTHO05D006216 3.8e-10 68.2 83 55.4
ClCG08G003150 Citrullus lanatus HOM05D000786 ORTHO05D006216 5.0e-10 67.8 83 49.4
PGSC0003DMG402019696 Solanum tuberosum HOM05D000786 ORTHO05D006216 5.0e-10 67.8 83 53.0
Glyma.20G169300 Glycine max HOM05D000786 ORTHO05D006216 6.5e-10 67.4 83 51.8
Nn1g06009 Nelumbo nucifera HOM05D000786 ORTHO05D006216 8.5e-10 67.0 83 50.6
Nitab4.5_0005070g0010 Nicotiana tabacum HOM05D000786 ORTHO05D006216 8.5e-10 67.0 84 50.0
TPR.G10805 Trifolium pratense HOM05D000786 ORTHO05D006216 8.5e-10 67.0 84 53.6
CAN.G1248.27 Capsicum annuum HOM05D000786 ORTHO05D006216 1.1e-09 66.6 83 51.8
Phvul.007G082800 Phaseolus vulgaris HOM05D000786 ORTHO05D006216 1.1e-09 66.6 83 53.0
Aqoxy5G02027 Aquilegia oxysepala HOM05D000786 ORTHO05D006216 1.4e-09 66.2 85 54.1
Aqoxy5G02029 Aquilegia oxysepala HOM05D000786 ORTHO05D006216 1.4e-09 66.2 85 54.1
MD10G1033400 Malus domestica HOM05D000786 ORTHO05D006216 1.4e-09 66.2 88 52.3
Nitab4.5_0000099g0130 Nicotiana tabacum HOM05D000786 ORTHO05D006216 1.4e-09 66.2 85 49.4
SalBow6G2838 Salvia bowleyana HOM05D000786 ORTHO05D006216 1.4e-09 66.2 84 50.0
Solyc04g051470.1 Solanum lycopersicum HOM05D000786 ORTHO05D006216 1.4e-09 66.2 83 51.8
Sopen04g022850 Solanum pennellii HOM05D000786 ORTHO05D006216 1.4e-09 66.2 83 51.8
CsaV3_6G002840 Cucumis sativus L. HOM05D000786 ORTHO05D006216 1.9e-09 65.9 83 48.2
Peaxi162Scf00360g10014 Petunia axillaris HOM05D000786 ORTHO05D006216 1.9e-09 65.9 85 48.2
MELO3C024975.2 Cucumis melo HOM05D000786 ORTHO05D006216 2.5e-09 65.5 83 48.2
Glyma.10G222300 Glycine max HOM05D000786 ORTHO05D006216 2.5e-09 65.5 83 49.4
ATR0800G011 Amborella trichopoda HOM05D000786 ORTHO05D006216 3.2e-09 65.1 83 54.2
Lalb_Chr06g0161691 Lupinus albus HOM05D000786 ORTHO05D006216 3.2e-09 65.1 86 47.7
Medtr1g098310 Medicago truncatula HOM05D000786 ORTHO05D006216 3.2e-09 65.1 83 53.0
PGSC0003DMG400025091 Solanum tuberosum HOM05D000786 ORTHO05D006216 3.2e-09 65.1 85 47.1
Phvul.004G091400 Phaseolus vulgaris HOM05D000786 ORTHO05D006216 5.5e-09 64.3 83 50.6
Eucgr.F02688 Eucalyptus grandis HOM05D000786 ORTHO05D006216 7.2e-09 63.9 83 47.0
Lj5g0026860 Lotus japonicus HOM05D000786 ORTHO05D006216 9.4e-09 63.5 83 53.0
CiPaw.15G013200 Carya illinoinensis HOM05D000786 ORTHO05D006216 1.2e-08 63.2 83 49.4
CiPaw.04G089000 Carya illinoinensis HOM05D000786 ORTHO05D006216 2.1e-08 62.4 67 52.2
Glyma.16G163900 Glycine max HOM05D000786 ORTHO05D006216 2.7e-08 62.0 83 49.4
Dinv19455 Davidia involucrata HOM05D000786 ORTHO05D006216 3.6e-08 61.6 68 55.9
Lsat_1_v5_gn_9_42040 Lactuca sativa HOM05D000786 ORTHO05D006216 3.6e-08 61.6 85 49.4
Ah.05g168150 Amaranthus hybridus HOM05D000786 ORTHO05D006216 4.7e-08 61.2 85 44.7
Lalb_Chr19g0130081 Lupinus albus HOM05D000786 ORTHO05D006216 7.9e-08 60.5 83 49.4
Glyma.02G079500 Glycine max HOM05D000786 ORTHO05D006216 1.0e-07 60.1 83 48.2
MBI19_g15944_MAGBIO Magnolia biondii HOM05D000786 ORTHO05D006216 1.0e-07 60.1 84 52.4
Sed0024174 Sechium edule HOM05D000786 ORTHO05D006216 1.0e-07 60.1 83 45.8
BcaB01g01430 Brassica carinata HOM05D000786 ORTHO05D006216 1.4e-07 59.7 84 46.4
CARHR260880 Cardamine hirsuta HOM05D000786 ORTHO05D006216 2.3e-07 58.9 83 47.0
HPP92_018298 Vanilla planifolia HOM05D000786 ORTHO05D006216 2.3e-07 58.9 88 48.9
Migut.N03203 Erythranthe guttata HOM05D000786 ORTHO05D006216 3.0e-07 58.5 85 43.5
Sed0000205 Sechium edule HOM05D000786 ORTHO05D006216 3.0e-07 58.5 83 44.6
HPP92_027891 Vanilla planifolia HOM05D000786 ORTHO05D006216 3.0e-07 58.5 88 48.9
AT4G09890 Arabidopsis thaliana HOM05D000786 ORTHO05D006216 5.1e-07 57.8 83 45.8
BcaC04g20992 Brassica carinata HOM05D000786 ORTHO05D006216 5.1e-07 57.8 83 45.8
Thhalv10029196m.g Eutrema salsugineum HOM05D000786 ORTHO05D006216 5.1e-07 57.8 83 45.8
THA.LOC109116395 Tarenaya hassleriana HOM05D000786 ORTHO05D006216 6.7e-07 57.4 83 44.6
Sc16g0004100 Simmondsia chinensis HOM05D000786 ORTHO05D006216 8.8e-07 57.0 81 50.6
Thecc.04G295200 Theobroma cacao HOM05D015449 ORTHO05D017881 8.8e-07 57.0 62 48.4
VMungo0720G1602 Vigna mungo HOM05D000786 ORTHO05D006216 8.8e-07 57.0 60 55.0
AL6G43590 Arabidopsis lyrata HOM05D000786 ORTHO05D006216 1.1e-06 56.6 83 44.6
Carub.0006s2842 Capsella rubella HOM05D000786 ORTHO05D006216 1.1e-06 56.6 83 44.6
Sp6g07600 Schrenkiella parvula HOM05D000786 ORTHO05D006216 1.1e-06 56.6 83 45.8
Actinidia31889 Actinidia chinensis HOM05D000786 ORTHO05D006216 2.0e-06 55.8 66 51.5
Peaxi162Scf00569g00525 Petunia axillaris HOM05D000786 ORTHO05D006216 2.0e-06 55.8 73 50.7
Medtr3g104640 Medicago truncatula HOM05D000786 ORTHO05D000779 2.6e-06 55.5 54 57.4
MBI18_g24950_MAGBIO Magnolia biondii HOM05D000786 ORTHO05D000779 3.3e-06 55.1 71 47.9
TPR.G3521 Trifolium pratense HOM05D000786 ORTHO05D000779 3.3e-06 55.1 54 57.4
CDE04G0685 Ceratophyllum demersum HOM05D000786 ORTHO05D006216 4.4e-06 54.7 72 52.8
Lj1g0021494 Lotus japonicus HOM05D000786 ORTHO05D000779 5.7e-06 54.3 81 44.4
Lj2g0013103 Lotus japonicus HOM05D000786 ORTHO05D006216 5.7e-06 54.3 83 43.4
Psat5g036120 Pisum sativum HOM05D000786 ORTHO05D000779 5.7e-06 54.3 54 55.6
AUR62034855 Chenopodium quinoa HOM05D000786 ORTHO05D006216 7.4e-06 53.9 92 43.5
Dinv02076 Davidia involucrata HOM05D000786 ORTHO05D000779 7.4e-06 53.9 45 60.0
Aa31LG9G12090 Aethionema arabicum HOM05D000786 ORTHO05D006216 9.7e-06 53.5 83 45.8
Ca_15820_v3 Cicer arietinum L. HOM05D000786 ORTHO05D000779 9.7e-06 53.5 74 48.6
Ca_15854_v3 Cicer arietinum L. HOM05D000786 ORTHO05D000779 9.7e-06 53.5 74 48.6
ECA232G3182 Erigeron canadensis HOM05D000002 ORTHO05D000001 9.7e-06 53.5 66 53.0
THA.LOC104820019 Tarenaya hassleriana HOM05D000786 ORTHO05D000779 9.7e-06 53.5 42 64.3


User provided reference genes

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