Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.04G216600 Glycine max HOM05D004262 ORTHO05D004886 2.7e-118 428.7 223 100.0
arahy.Tifrunner.gnm1.ann1.H08UBS Arachis hypogaea HOM05D004262 ORTHO05D004886 4.9e-51 205.3 232 54.3
Ca_16911_v3 Cicer arietinum L. HOM05D004262 ORTHO05D004886 7.8e-49 198.0 232 53.9
Lj1g0022256 Lotus japonicus HOM05D004262 ORTHO05D004886 1.9e-47 193.4 229 52.8
arahy.Tifrunner.gnm1.ann1.3RI1TB Arachis hypogaea HOM05D004262 ORTHO05D004886 3.3e-47 192.6 233 52.4
Glyma.17G127700 Glycine max HOM05D004262 ORTHO05D004886 7.3e-47 191.4 274 48.2
Psat5g062600 Pisum sativum HOM05D004262 ORTHO05D004886 2.8e-46 189.5 227 52.0
Phvul.003G208800 Phaseolus vulgaris HOM05D004262 ORTHO05D004886 8.4e-43 177.9 271 45.8
Glyma.04G216400 Glycine max HOM05D004262 ORTHO05D004886 2.4e-42 176.4 180 61.1
Glyma.05G045500 Glycine max HOM05D004262 ORTHO05D004886 3.5e-41 172.6 273 46.2
Lalb_Chr08g0238681 Lupinus albus HOM05D004262 ORTHO05D004886 1.6e-38 163.7 224 50.9
VMungo0022G0001 Vigna mungo HOM05D004262 ORTHO05D004886 2.1e-33 146.7 223 46.6
Medtr3g095410 Medicago truncatula HOM05D004262 ORTHO05D004886 1.4e-29 134.0 223 41.7
Cfa002810 Carpinus fangiana HOM05D004262 ORTHO05D004886 1.6e-25 120.6 228 38.6
QL06p030897 Quercus lobata HOM05D004262 ORTHO05D004886 1.3e-24 117.5 232 40.5
Sed0013193 Sechium edule HOM05D004262 ORTHO05D004886 3.1e-21 106.3 233 37.3
CiPaw.04G086800 Carya illinoinensis HOM05D004262 ORTHO05D004886 2.6e-20 103.2 229 37.6
Thecc.01G119500 Theobroma cacao HOM05D004262 ORTHO05D004886 7.6e-20 101.7 232 37.1
Duzib147G0824 Durio zibethinus HOM05D004262 ORTHO05D004886 2.9e-19 99.8 233 36.5
Ciclev10024792m.g Citrus clementina HOM05D004262 ORTHO05D004886 4.9e-19 99.0 232 35.3
CiPaw.04G087100 Carya illinoinensis HOM05D004262 ORTHO05D004886 4.2e-18 95.9 236 33.9
Dinv12126 Davidia involucrata HOM05D004262 ORTHO05D004886 9.3e-18 94.7 228 36.4
MD01G1017000 Malus domestica HOM05D004262 ORTHO05D004886 1.3e-16 90.9 229 33.2
Prupe.7G207600 Prunus persica HOM05D004262 ORTHO05D004886 1.5e-15 87.4 234 35.5
TAR250G0005 Trochodendron aralioides HOM05D004262 ORTHO05D004886 1.9e-15 87.0 232 36.2
Cpa.g.sc72.29 Carica papaya HOM05D004262 ORTHO05D004886 2.1e-14 83.6 224 34.4
Dinv15095 Davidia involucrata HOM05D004262 ORTHO05D004886 3.7e-14 82.8 229 34.1
Gohir.A11G223950 Gossypium hirsutum HOM05D004262 ORTHO05D004886 1.2e-12 77.8 231 31.6
COL.COLO4_22393 Corchorus olitorius HOM05D000258 ORTHO05D000153 2.6e-12 76.6 216 33.8
Sabra16G0193600 Salix brachista HOM05D004262 ORTHO05D004886 2.6e-12 76.6 222 32.9
CSS0008059 Camellia sinensis var. sinensis HOM05D004262 ORTHO05D004886 3.4e-12 76.3 232 33.2
Cc07_g17550 Coffea canephora HOM05D004262 ORTHO05D004886 7.6e-12 75.1 232 31.9
TWI31G0151 Tripterygium wilfordii HOM05D004262 ORTHO05D004886 1.0e-11 74.7 233 33.0
Potri.001G307700 Populus trichocarpa HOM05D004262 ORTHO05D004886 1.3e-11 74.3 223 34.1
Actinidia09812 Actinidia chinensis HOM05D004262 ORTHO05D004886 6.5e-11 72.0 230 31.3
EL10Ac6g15245 Beta vulgaris HOM05D004262 ORTHO05D004886 6.5e-11 72.0 239 31.0
Sabra19G0004000 Salix brachista HOM05D004262 ORTHO05D004886 6.5e-11 72.0 218 33.9
Sabra19G0021500 Salix brachista HOM05D004262 ORTHO05D004886 6.5e-11 72.0 218 33.9
AUR62003631 Chenopodium quinoa HOM05D004262 ORTHO05D004886 2.5e-10 70.1 240 31.2
Gohir.D11G226360 Gossypium hirsutum HOM05D004262 ORTHO05D004886 4.2e-10 69.3 230 31.7
Gorai.002G150600 Gossypium raimondii HOM05D004262 ORTHO05D004886 5.5e-10 68.9 229 31.9
Potri.019G004000 Populus trichocarpa HOM05D004262 ORTHO05D004886 7.1e-10 68.6 220 30.0
ClCG02G000740 Citrullus lanatus HOM05D004262 ORTHO05D004886 2.1e-09 67.0 226 28.3
Oeu002630.1 Olea europaea HOM05D004262 ORTHO05D004886 2.7e-09 66.6 225 33.3
Sc16g0004000 Simmondsia chinensis HOM05D004262 ORTHO05D004886 3.5e-09 66.2 229 31.4
TAR381G1254 Trochodendron aralioides HOM05D004262 ORTHO05D004886 1.0e-08 64.7 231 32.5
COL.COLO4_23999 Corchorus olitorius HOM05D000145 ORTHO05D004886 1.8e-08 63.9 236 30.9
Rhsim10G0142400 Rhododendron simsii HOM05D004262 ORTHO05D004886 2.3e-08 63.5 232 30.2
MELO3C023273.2 Cucumis melo HOM05D004262 ORTHO05D004886 3.0e-08 63.2 237 32.1
DCAR_014352 Daucus carota HOM05D004262 ORTHO05D004886 5.1e-08 62.4 232 27.6
AUR62017940 Chenopodium quinoa HOM05D004262 ORTHO05D004886 6.7e-08 62.0 246 29.3
ATR0820G284 Amborella trichopoda HOM05D004262 ORTHO05D004886 8.7e-08 61.6 228 28.1
TAR625G1293 Trochodendron aralioides HOM05D004262 ORTHO05D004886 1.5e-07 60.8 228 32.0
vmacro12820 Vaccinium macrocarpon HOM05D004262 ORTHO05D004886 1.5e-07 60.8 231 30.7
Nitab4.5_0001582g0040 Nicotiana tabacum HOM05D004262 ORTHO05D004886 2.5e-07 60.1 227 30.0
Nn5g28756 Nelumbo nucifera HOM05D004262 ORTHO05D004886 3.3e-07 59.7 238 30.7
CsaV3_2G018000 Cucumis sativus L. HOM05D004262 ORTHO05D004886 7.4e-07 58.5 228 29.8
Nitab4.5_0004021g0030 Nicotiana tabacum HOM05D004262 ORTHO05D004886 3.7e-06 56.2 227 30.4
MSTRG.23288 Avicennia marina HOM05D004262 ORTHO05D004886 8.2e-06 55.1 231 27.7


User provided reference genes

Program Settings