Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.04G215100 Glycine max HOM05D004540 ORTHO05D004852 2.7e-28 128.3 78 100.0
Glyma.06G151100 Glycine max HOM05D004540 ORTHO05D004852 4.7e-25 117.5 78 93.6
TPR.G18724 Trifolium pratense HOM05D004540 ORTHO05D004852 2.0e-20 102.1 51 84.3
Medtr8g092860 Medicago truncatula HOM05D004540 ORTHO05D004852 7.7e-20 100.1 51 82.4
Phvul.009G148100 Phaseolus vulgaris HOM05D004540 ORTHO05D004852 1.3e-19 99.4 77 62.3
Lalb_Chr12g0203271 Lupinus albus HOM05D004540 ORTHO05D004852 3.8e-19 97.8 70 65.7
TPR.G37334 Trifolium pratense HOM05D004540 ORTHO05D004852 1.1e-18 96.3 51 80.4
Thecc.01G124700 Theobroma cacao HOM05D004540 ORTHO05D004852 9.5e-18 93.2 51 78.4
Medtr3g095690 Medicago truncatula HOM05D004540 ORTHO05D004852 1.2e-17 92.8 77 58.4
Phvul.002G270200 Phaseolus vulgaris HOM05D004540 ORTHO05D004852 3.6e-17 91.3 50 78.0
QL06p029800 Quercus lobata HOM05D004540 ORTHO05D004852 3.6e-17 91.3 50 78.0
CiPaw.03G127700 Carya illinoinensis HOM05D004540 ORTHO05D004852 1.0e-16 89.7 51 82.4
Glyma.08G147100 Glycine max HOM05D004540 ORTHO05D004852 1.4e-16 89.4 52 78.8
Lj4g0001726 Lotus japonicus HOM05D004540 ORTHO05D004852 1.4e-16 89.4 52 78.8
Cfa002837 Carpinus fangiana HOM05D004540 ORTHO05D004852 2.3e-16 88.6 51 76.5
Prupe.6G159700 Prunus persica HOM05D004540 ORTHO05D004852 4.0e-16 87.8 50 78.0
CiPaw.04G085800 Carya illinoinensis HOM05D004540 ORTHO05D004852 6.8e-16 87.0 51 72.5
Glyma.05G189500 Glycine max HOM05D004540 ORTHO05D004852 6.8e-16 87.0 52 76.9
Lalb_Chr07g0184521 Lupinus albus HOM05D004540 ORTHO05D004852 6.8e-16 87.0 51 72.5
Haze_25134 Corylus avellana HOM05D004540 ORTHO05D004852 1.2e-15 86.3 50 76.0
Gohir.A11G055800 Gossypium hirsutum HOM05D004540 ORTHO05D004852 1.2e-15 86.3 52 75.0
Gohir.D11G059900 Gossypium hirsutum HOM05D004540 ORTHO05D004852 1.2e-15 86.3 52 75.0
Gorai.007G064600 Gossypium raimondii HOM05D004540 ORTHO05D004852 1.2e-15 86.3 52 75.0
Gohir.A05G386200 Gossypium hirsutum HOM05D004540 ORTHO05D004852 3.4e-15 84.7 54 72.2
Gohir.D04G023300 Gossypium hirsutum HOM05D004540 ORTHO05D004852 3.4e-15 84.7 54 72.2
Gorai.012G033600 Gossypium raimondii HOM05D004540 ORTHO05D004852 3.4e-15 84.7 54 72.2
Cc07_g17790 Coffea canephora HOM05D004540 ORTHO05D004852 5.7e-15 84.0 51 72.5
Lalb_Chr13g0296521 Lupinus albus HOM05D004540 ORTHO05D004852 9.8e-15 83.2 51 72.5
Potri.007G110700 Populus trichocarpa HOM05D004540 ORTHO05D004852 3.7e-14 81.3 51 64.7
Ciclev10026873m.g Citrus clementina HOM05D004540 ORTHO05D004852 4.9e-14 80.9 53 69.8
Gohir.A10G083507 Gossypium hirsutum HOM05D004540 ORTHO05D004852 1.1e-13 79.7 51 66.7
Gohir.D10G105766 Gossypium hirsutum HOM05D004540 ORTHO05D004852 1.1e-13 79.7 51 66.7
Gorai.011G115500 Gossypium raimondii HOM05D004540 ORTHO05D004852 1.1e-13 79.7 51 66.7
Potri.005G057400 Populus trichocarpa HOM05D004540 ORTHO05D004852 1.1e-13 79.7 51 64.7
Lalb_Chr08g0238521 Lupinus albus HOM05D004540 ORTHO05D004852 1.2e-12 76.3 54 68.5
FvH4_1g23990 Fragaria vesca HOM05D004540 ORTHO05D004852 4.6e-12 74.3 47 68.1
FAN23G3045 Fragaria x ananassa HOM05D004540 ORTHO05D004852 4.6e-12 74.3 47 68.1
MELO3C008039.2 Cucumis melo HOM05D004540 ORTHO05D004852 5.9e-12 73.9 48 70.8
FAN19G2513 Fragaria x ananassa HOM05D004540 ORTHO05D004852 5.9e-12 73.9 46 69.6
Cpa.g.sc42.109 Carica papaya HOM05D004540 ORTHO05D004852 7.8e-12 73.6 51 68.6
FAN26G2008 Fragaria x ananassa HOM05D004540 ORTHO05D004852 1.0e-11 73.2 47 66.0
RcHm_v2.0_Chr2g0120121 Rosa chinensis HOM05D004540 ORTHO05D004852 1.3e-11 72.8 47 68.1
Sed0025334 Sechium edule HOM05D004540 ORTHO05D004852 2.3e-11 72.0 49 69.4
CsaV3_6G041820 Cucumis sativus L. HOM05D004540 ORTHO05D004852 3.9e-11 71.2 46 71.7
Eucgr.I00231 Eucalyptus grandis HOM05D004540 ORTHO05D004852 8.6e-11 70.1 51 66.7
Nn1g06160 Nelumbo nucifera HOM05D004540 ORTHO05D004852 8.6e-11 70.1 51 70.6
MD01G1010200 Malus domestica HOM05D004540 ORTHO05D004852 1.9e-10 68.9 46 67.4
Manes.12G152100 Manihot esculenta HOM05D004540 ORTHO05D004852 3.3e-10 68.2 52 63.5
Manes.13G071600 Manihot esculenta HOM05D004540 ORTHO05D004852 5.6e-10 67.4 51 62.7
Nn5g28680 Nelumbo nucifera HOM05D004540 ORTHO05D004852 3.6e-09 64.7 51 62.7
Migut.H01103 Erythranthe guttata HOM05D004540 ORTHO05D004852 1.0e-08 63.2 56 58.9
CiPaw.16G014800 Carya illinoinensis HOM05D004540 ORTHO05D004852 1.8e-08 62.4 50 62.0
CSS0044504 Camellia sinensis var. sinensis HOM05D004540 ORTHO05D004852 3.1e-08 61.6 57 59.6
DCAR_001351 Daucus carota HOM05D004540 ORTHO05D004852 4.0e-08 61.2 51 54.9
DCAR_014344 Daucus carota HOM05D004540 ORTHO05D004852 4.0e-08 61.2 59 55.9
Lalb_Chr06g0161521 Lupinus albus HOM05D004540 ORTHO05D004852 6.8e-08 60.5 47 59.6
Lalb_Chr21g0305401 Lupinus albus HOM05D004540 ORTHO05D004852 1.5e-07 59.3 43 62.8
AT5G64667 Arabidopsis thaliana HOM05D004540 ORTHO05D004852 2.0e-07 58.9 55 52.7
Carub.0008s2546 Capsella rubella HOM05D004540 ORTHO05D004852 2.0e-07 58.9 55 50.9
Haze_17734 Corylus avellana HOM05D004540 ORTHO05D004852 2.0e-07 58.9 52 63.5
Thecc.08G147500 Theobroma cacao HOM05D004540 ORTHO05D004852 3.4e-07 58.2 49 59.2
BcaB04g19000 Brassica carinata HOM05D004540 ORTHO05D004852 7.5e-07 57.0 56 48.2
A03p40790 Brassica napus HOM05D004540 ORTHO05D004852 7.5e-07 57.0 56 48.2
C03p49670 Brassica napus HOM05D004540 ORTHO05D004852 7.5e-07 57.0 56 48.2
BolC3t17265H Brassica oleracea HOM05D004540 ORTHO05D004852 7.5e-07 57.0 56 48.2
BraA03t13237Z Brassica rapa HOM05D004540 ORTHO05D004852 7.5e-07 57.0 56 48.2
Cfa018340 Carpinus fangiana HOM05D004540 ORTHO05D004852 7.5e-07 57.0 49 65.3
Potri.005G189900 Populus trichocarpa HOM05D004540 ORTHO05D004852 7.5e-07 57.0 52 55.8
CARHR094090 Cardamine hirsuta HOM05D004540 ORTHO05D004852 9.8e-07 56.6 54 48.1
Manes.18G089800 Manihot esculenta HOM05D004540 ORTHO05D004852 9.8e-07 56.6 51 54.9
Thhalv10022275m.g Eutrema salsugineum HOM05D004540 ORTHO05D004852 1.3e-06 56.2 56 46.4
Glyma.16G170400 Glycine max HOM05D004540 ORTHO05D004852 1.3e-06 56.2 49 57.1
Potri.002G070401 Populus trichocarpa HOM05D004540 ORTHO05D004852 1.3e-06 56.2 49 59.2
AT3G18715 Arabidopsis thaliana HOM05D004540 ORTHO05D004852 1.7e-06 55.8 54 46.3
Thhalv10005301m.g Eutrema salsugineum HOM05D004540 ORTHO05D004852 1.7e-06 55.8 55 50.9
Phvul.004G098900 Phaseolus vulgaris HOM05D004540 ORTHO05D004852 1.7e-06 55.8 49 55.1
AL8G42080 Arabidopsis lyrata HOM05D004540 ORTHO05D004852 2.2e-06 55.5 55 49.1
CARHR278640 Cardamine hirsuta HOM05D004540 ORTHO05D004852 2.9e-06 55.1 55 50.9
CiPaw.15G019000 Carya illinoinensis HOM05D004540 ORTHO05D004852 2.9e-06 55.1 46 60.9
Glyma.02G084000 Glycine max HOM05D004540 ORTHO05D004852 2.9e-06 55.1 49 57.1
Migut.L00808 Erythranthe guttata HOM05D004540 ORTHO05D004852 3.7e-06 54.7 62 48.4
Phvul.007G078400 Phaseolus vulgaris HOM05D004540 ORTHO05D004852 3.7e-06 54.7 48 60.4
Sabra02G0055000 Salix brachista HOM05D004540 ORTHO05D004852 3.7e-06 54.7 49 59.2
A05p30900 Brassica napus HOM05D004540 ORTHO05D004852 6.4e-06 53.9 53 47.2
BraA05t21932Z Brassica rapa HOM05D004540 ORTHO05D004852 6.4e-06 53.9 53 47.2
Lj5g0026068 Lotus japonicus HOM05D004540 ORTHO05D004852 6.4e-06 53.9 49 55.1
Manes.02G177000 Manihot esculenta HOM05D004540 ORTHO05D004852 6.4e-06 53.9 51 56.9


User provided reference genes

Program Settings