Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.04G202600 Glycine max HOM05D005248 ORTHO05D006409 2.8e-97 358.6 178 100.0
Phvul.009G158800 Phaseolus vulgaris HOM05D005248 ORTHO05D006409 9.2e-85 317.0 183 87.4
Glyma.06G162900 Glycine max HOM05D005248 ORTHO05D006409 9.5e-82 307.0 183 85.8
Lj1g0011989 Lotus japonicus HOM05D005248 ORTHO05D006409 4.9e-70 268.1 182 73.6
Medtr3g098480 Medicago truncatula HOM05D005248 ORTHO05D006409 4.9e-70 268.1 178 76.4
arahy.Tifrunner.gnm1.ann1.1UQX8S Arachis hypogaea HOM05D005248 ORTHO05D006409 1.9e-66 256.1 177 72.3
arahy.Tifrunner.gnm1.ann1.JK6BKQ Arachis hypogaea HOM05D005248 ORTHO05D006409 1.9e-66 256.1 177 72.3
arahy.Tifrunner.gnm1.ann1.4X1L65 Arachis hypogaea HOM05D005248 ORTHO05D006409 1.2e-65 253.4 176 71.6
arahy.Tifrunner.gnm1.ann1.X29WZH Arachis hypogaea HOM05D005248 ORTHO05D006409 4.7e-65 251.5 177 71.8
VMungo0251G2692 Vigna mungo HOM05D005248 ORTHO05D006409 6.2e-65 251.1 178 71.3
MSTRG.22815 Avicennia marina HOM05D005248 ORTHO05D006409 5.8e-63 244.6 180 66.1
Lalb_Chr12g0202581 Lupinus albus HOM05D005248 ORTHO05D006409 7.6e-63 244.2 179 70.4
Cpa.g.sc13.186 Carica papaya HOM05D005248 ORTHO05D006409 4.9e-62 241.5 191 66.0
QL10p000295 Quercus lobata HOM05D005248 ORTHO05D006409 6.4e-62 241.1 180 64.4
Duzib205G1954 Durio zibethinus HOM05D005248 ORTHO05D006409 8.4e-62 240.7 180 66.1
Psat7g039840 Pisum sativum HOM05D005248 ORTHO05D006409 3.2e-61 238.8 175 68.0
Cfa018696 Carpinus fangiana HOM05D005248 ORTHO05D006409 4.2e-61 238.4 182 65.4
Glyma.08G007100 Glycine max HOM05D005248 ORTHO05D006409 4.2e-61 238.4 171 70.2
Medtr8g096070 Medicago truncatula HOM05D005248 ORTHO05D006409 4.2e-61 238.4 175 66.3
COL.COLO4_37271 Corchorus olitorius HOM05D005248 ORTHO05D006409 5.4e-61 238.0 181 65.7
SalBow1G4990 Salvia bowleyana HOM05D005248 ORTHO05D006409 7.1e-61 237.7 180 65.0
Thecc.03G142000 Theobroma cacao HOM05D005248 ORTHO05D006409 7.1e-61 237.7 180 65.0
GSVIVG01005682001 Vitis vinifera HOM05D005248 ORTHO05D006409 1.2e-60 236.9 179 65.9
Gohir.D07G050600 Gossypium hirsutum HOM05D005248 ORTHO05D006409 4.6e-60 235.0 179 64.8
PGSC0003DMG400014171 Solanum tuberosum HOM05D005248 ORTHO05D006409 4.6e-60 235.0 185 63.2
Gohir.A07G046300 Gossypium hirsutum HOM05D005248 ORTHO05D006409 6.0e-60 234.6 179 64.8
SGA_v2.0_scaffold37G14670 Striga asiatica HOM05D005248 ORTHO05D006409 6.0e-60 234.6 180 65.6
Cc04_g05750 Coffea canephora HOM05D005248 ORTHO05D006409 7.8e-60 234.2 182 63.7
Ca_16820_v3 Cicer arietinum L. HOM05D000402 ORTHO05D000263 1.3e-59 233.4 153 73.9
Gorai.001G053700 Gossypium raimondii HOM05D005248 ORTHO05D006409 1.3e-59 233.4 179 64.8
Sopen03g037010 Solanum pennellii HOM05D005248 ORTHO05D006409 1.3e-59 233.4 185 62.2
Nitab4.5_0000976g0180 Nicotiana tabacum HOM05D005248 ORTHO05D006409 5.1e-59 231.5 185 61.6
Dinv13708 Davidia involucrata HOM05D005248 ORTHO05D006409 6.6e-59 231.1 186 62.9
CAN.G1008.49 Capsicum annuum HOM05D005248 ORTHO05D006409 8.7e-59 230.7 186 60.8
TWI39G0330 Tripterygium wilfordii HOM05D005248 ORTHO05D006409 8.7e-59 230.7 185 61.1
Actinidia25510 Actinidia chinensis HOM05D005248 ORTHO05D006409 1.1e-58 230.3 187 62.6
SGA_v2.0_scaffold44G16640 Striga asiatica HOM05D005248 ORTHO05D006409 1.1e-58 230.3 176 65.9
Rhsim08G0198900 Rhododendron simsii HOM05D005248 ORTHO05D006409 7.3e-58 227.6 186 62.4
Oeu051184.1 Olea europaea HOM05D005248 ORTHO05D006409 9.6e-58 227.3 177 62.1
Hma1.2p1_0452F.1_g155900 Hydrangea macrophylla HOM05D005248 ORTHO05D006409 2.8e-57 225.7 180 63.3
FvH4_5g09730 Fragaria vesca HOM05D005248 ORTHO05D006409 3.6e-57 225.3 179 63.7
MD14G1145800 Malus domestica HOM05D005248 ORTHO05D006409 4.8e-57 224.9 179 62.6
THA.LOC104825042 Tarenaya hassleriana HOM05D005248 ORTHO05D006409 4.8e-57 224.9 185 61.6
Potri.015G108300 Populus trichocarpa HOM05D005248 ORTHO05D006409 6.2e-57 224.6 183 62.3
FAN04G2277 Fragaria x ananassa HOM05D005248 ORTHO05D006409 8.1e-57 224.2 179 63.7
Oeu017204.1 Olea europaea HOM05D005248 ORTHO05D006409 8.1e-57 224.2 181 60.2
Ciclev10032866m.g Citrus clementina HOM05D005248 ORTHO05D006409 1.1e-56 223.8 185 61.1
CSS0027803 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 1.4e-56 223.4 181 60.8
FAN08G1048 Fragaria x ananassa HOM05D005248 ORTHO05D006409 1.4e-56 223.4 179 63.1
AUR62032207 Chenopodium quinoa HOM05D005248 ORTHO05D006409 1.8e-56 223.0 186 62.4
FAN13G2612 Fragaria x ananassa HOM05D005248 ORTHO05D006409 2.4e-56 222.6 179 63.1
Manes.14G043700 Manihot esculenta HOM05D005248 ORTHO05D006409 2.4e-56 222.6 189 59.8
Prupe.5G140100 Prunus persica HOM05D005248 ORTHO05D006409 2.4e-56 222.6 184 60.9
EL10Ac5g11271 Beta vulgaris HOM05D005248 ORTHO05D006409 3.1e-56 222.2 182 62.6
CSS0031400 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 4.0e-56 221.9 186 58.6
FAN18G0065 Fragaria x ananassa HOM05D005248 ORTHO05D006409 4.0e-56 221.9 179 62.6
RcHm_v2.0_Chr7g0188501 Rosa chinensis HOM05D005248 ORTHO05D006409 4.0e-56 221.9 179 63.1
Sabra12G0080100 Salix brachista HOM05D005248 ORTHO05D006409 4.0e-56 221.9 183 60.7
AUR62043379 Chenopodium quinoa HOM05D005248 ORTHO05D006409 9.0e-56 220.7 186 62.9
Hund10025 Selenicereus undatus HOM05D005248 ORTHO05D006409 1.5e-55 219.9 182 60.4
AUR62043864 Chenopodium quinoa HOM05D005248 ORTHO05D006409 2.0e-55 219.5 186 62.4
PGR119G0545 Punica granatum HOM05D005248 ORTHO05D006409 2.0e-55 219.5 191 59.7
Sed0027310 Sechium edule HOM05D005248 ORTHO05D006409 2.6e-55 219.2 139 72.7
Hund02516 Selenicereus undatus HOM05D005248 ORTHO05D006409 2.6e-55 219.2 180 62.2
CANSAT78G1265 Cannabis sativa HOM05D005248 ORTHO05D006409 3.4e-55 218.8 196 56.1
Haze_07087 Corylus avellana HOM05D005248 ORTHO05D006409 3.4e-55 218.8 224 53.6
Lj5A86T66 Lonicera japonica HOM05D005248 ORTHO05D006409 3.4e-55 218.8 190 56.8
unitig_61.g26221 Utricularia gibba HOM05D005248 ORTHO05D006409 3.4e-55 218.8 177 62.1
Thhalv10014773m.g Eutrema salsugineum HOM05D005248 ORTHO05D006409 5.8e-55 218.0 185 60.0
AT5G51040 Arabidopsis thaliana HOM05D005248 ORTHO05D006409 9.9e-55 217.2 186 59.1
CsaV3_2G009360 Cucumis sativus L. HOM05D005248 ORTHO05D006409 1.7e-54 216.5 140 71.4
Sc14g0003150 Simmondsia chinensis HOM05D005248 ORTHO05D006409 1.7e-54 216.5 147 69.4
ClCG11G000550 Citrullus lanatus HOM05D005248 ORTHO05D006409 2.2e-54 216.1 150 67.3
MELO3C008773.2 Cucumis melo HOM05D005248 ORTHO05D006409 2.2e-54 216.1 140 71.4
Aqoxy5G00839 Aquilegia oxysepala HOM05D005248 ORTHO05D006409 2.9e-54 215.7 169 60.4
PSO782G4423 Papaver somniferum HOM05D005248 ORTHO05D006409 2.9e-54 215.7 140 69.3
Ah.11g047000 Amaranthus hybridus HOM05D005248 ORTHO05D006409 3.8e-54 215.3 130 73.8
Migut.I00662 Erythranthe guttata HOM05D005248 ORTHO05D006409 3.8e-54 215.3 181 59.7
TAR371G0926 Trochodendron aralioides HOM05D005248 ORTHO05D006409 3.8e-54 215.3 136 69.1
AL8G25260 Arabidopsis lyrata HOM05D005248 ORTHO05D006409 8.4e-54 214.2 185 59.5
CDE06G0011 Ceratophyllum demersum HOM05D005248 ORTHO05D006409 8.4e-54 214.2 160 65.6
PSO063G1686 Papaver somniferum HOM05D005248 ORTHO05D006409 8.4e-54 214.2 140 68.6
Sp6g13210 Schrenkiella parvula HOM05D005248 ORTHO05D006409 8.4e-54 214.2 185 58.9
Zm00001eb198100 Zea mays HOM05D005248 ORTHO05D006409 8.4e-54 214.2 173 59.5
Carub.0008s1104 Capsella rubella HOM05D005248 ORTHO05D006409 1.4e-53 213.4 133 71.4
ECA247G0315 Erigeron canadensis HOM05D005248 ORTHO05D000263 1.9e-53 213.0 140 68.6
Aqoxy4G00470 Aquilegia oxysepala HOM05D005248 ORTHO05D006409 2.4e-53 212.6 177 57.6
BcaB05g24022 Brassica carinata HOM05D005248 ORTHO05D006409 2.4e-53 212.6 185 57.8
CARHR257090 Cardamine hirsuta HOM05D005248 ORTHO05D006409 2.4e-53 212.6 185 57.8
DCAR_025638 Daucus carota HOM05D005248 ORTHO05D006409 3.2e-53 212.2 200 53.0
Atru.chr6.1938 Acer truncatum HOM05D005248 ORTHO05D006409 4.2e-53 211.8 223 51.1
Nitab4.5_0012624g0030 Nicotiana tabacum HOM05D005248 ORTHO05D006409 4.2e-53 211.8 141 70.2
A10p08030 Brassica napus HOM05D005248 ORTHO05D006409 5.4e-53 211.5 185 58.4
CiPaw.12G000300 Carya illinoinensis HOM05D005248 ORTHO05D006409 5.4e-53 211.5 164 65.9
MD06G1128800 Malus domestica HOM05D005248 ORTHO05D006409 5.4e-53 211.5 179 59.8
BcaC03g14629 Brassica carinata HOM05D005248 ORTHO05D006409 7.1e-53 211.1 182 58.2
Nn3g16250 Nelumbo nucifera HOM05D005248 ORTHO05D006409 7.1e-53 211.1 183 57.9
A02p12520 Brassica napus HOM05D005248 ORTHO05D006409 1.6e-52 209.9 181 59.1
vmacro19110 Vaccinium macrocarpon HOM05D005248 ORTHO05D006409 1.6e-52 209.9 169 60.4
BraSC35t45996Z Brassica rapa HOM05D005248 ORTHO05D006409 2.1e-52 209.5 185 57.8
Aa31LG3G7530 Aethionema arabicum HOM05D005248 ORTHO05D006409 2.7e-52 209.1 204 54.9
BolC9t56844H Brassica oleracea HOM05D005248 ORTHO05D006409 1.0e-51 207.2 186 58.1
Peaxi162Scf00314g00750 Petunia axillaris HOM05D005248 ORTHO05D006409 1.3e-51 206.8 180 56.7
HanXRQChr02g0034361 Helianthus annuus HOM05D005248 ORTHO05D006409 2.3e-51 206.1 140 67.9
vmacro16762 Vaccinium macrocarpon HOM05D005248 ORTHO05D006409 2.3e-51 206.1 144 67.4
Eucgr.H01475 Eucalyptus grandis HOM05D005248 ORTHO05D006409 5.1e-51 204.9 132 72.0
BraA02t06314Z Brassica rapa HOM05D005248 ORTHO05D006409 7.4e-50 201.1 186 55.4
Atru.chr10.902 Acer truncatum HOM05D005248 ORTHO05D006409 9.6e-50 200.7 152 61.8
vmacro19116 Vaccinium macrocarpon HOM05D000402 ORTHO05D000263 1.6e-49 199.9 187 54.0
BolC2t08204H Brassica oleracea HOM05D005248 ORTHO05D006409 2.8e-49 199.1 191 55.5
Lsat_1_v5_gn_1_30140 Lactuca sativa HOM05D005248 ORTHO05D006409 2.8e-49 199.1 175 59.4
C09p39650 Brassica napus HOM05D005248 ORTHO05D006409 4.8e-49 198.4 185 56.2
Sabra15G0130900 Salix brachista HOM05D001551 ORTHO05D000263 6.2e-49 198.0 246 45.5
Os11g0528300 Oryza sativa ssp. japonica HOM05D005248 ORTHO05D006409 1.1e-48 197.2 156 61.5
Lj9C488G13 Lonicera japonica HOM05D005248 ORTHO05D006409 5.3e-48 194.9 115 73.0
HPP92_006440 Vanilla planifolia HOM05D005248 ORTHO05D006409 3.4e-47 192.2 131 67.9
Sabra15G0128600 Salix brachista HOM05D005248 ORTHO05D006409 1.7e-46 189.9 270 42.2
C02p20620 Brassica napus HOM05D005248 ORTHO05D006409 2.2e-46 189.5 117 70.9
Nitab4.5_0010893g0020 Nicotiana tabacum HOM05D005248 ORTHO05D006409 8.4e-46 187.6 158 59.5
ATR0582G036 Amborella trichopoda HOM05D005248 ORTHO05D006409 3.2e-45 185.7 182 53.8
PSO541G2841 Papaver somniferum HOM05D005248 ORTHO05D006409 1.2e-44 183.7 128 65.6
Lsat_1_v5_gn_9_37901 Lactuca sativa HOM05D005248 ORTHO05D006409 1.1e-40 170.6 118 66.9
CSS0028005 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 3.1e-40 169.1 158 53.8
SMO146G0118 Selaginella moellendorffii HOM05D005248 ORTHO05D006409 3.1e-40 169.1 123 61.8
Lj4g0025558 Lotus japonicus HOM05D005248 ORTHO05D006409 4.2e-37 158.7 145 62.8
Mapoly0022s0036 Marchantia polymorpha HOM05D005248 ORTHO05D006409 5.5e-37 158.3 124 56.5
Pp3c16_25170 Physcomitrium patens HOM05D005248 ORTHO05D006409 2.7e-36 156.0 125 53.6
Gohir.A07G044532 Gossypium hirsutum HOM05D005248 ORTHO05D006409 7.9e-36 154.5 87 75.9
Rhsim12G0181600 Rhododendron simsii HOM05D005248 ORTHO05D006409 8.2e-33 144.4 110 65.5
TPR.G12753 Trifolium pratense HOM05D005248 ORTHO05D006409 2.5e-29 132.9 72 80.6
Gohir.A11G038833 Gossypium hirsutum HOM05D005248 ORTHO05D006409 4.2e-29 132.1 86 68.6
Cre12.g550750 Chlamydomonas reinhardtii HOM05D005248 ORTHO05D006409 4.6e-28 128.6 116 50.9
PSO675G1946 Papaver somniferum HOM05D005248 ORTHO05D006409 1.8e-27 126.7 92 66.3
Zm00001eb113310 Zea mays HOM05D005248 ORTHO05D006409 1.8e-27 126.7 79 65.8
BcaC04g20744 Brassica carinata HOM05D005248 ORTHO05D006409 1.7e-25 120.2 72 68.1
Nitab4.5_0002540g0030 Nicotiana tabacum HOM05D005248 ORTHO05D006409 8.2e-25 117.9 131 52.7
TPR.G20580 Trifolium pratense HOM05D005248 ORTHO05D006409 1.8e-24 116.7 109 58.7
QL10p017282 Quercus lobata HOM05D005248 ORTHO05D006409 5.9e-23 111.7 65 69.2
PRCOL_00003706 Prasinoderma coloniale HOM05D005248 ORTHO05D006409 5.1e-19 98.6 113 38.9
MCO01G238 Micromonas commoda HOM05D005248 ORTHO05D006409 9.7e-18 94.4 102 42.2
CAN.G412.4 Capsicum annuum HOM05D005248 ORTHO05D006409 4.8e-17 92.0 60 65.0
TPR.G21935 Trifolium pratense HOM05D005248 ORTHO05D006409 1.5e-10 70.5 35 85.7
Gorai.007G045300 Gossypium raimondii HOM05D005248 ORTHO05D006409 3.3e-10 69.3 84 53.6
AagrBONN_evm.TU.Sc2ySwM_368.2623 Anthoceros agrestis HOM05D005248 ORTHO05D006409 1.6e-07 60.5 58 50.0


User provided reference genes

Program Settings