Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.04G202300 Glycine max HOM05D006645 ORTHO05D008129 7.5e-89 330.5 166 100.0
Phvul.009G160600 Phaseolus vulgaris HOM05D006645 ORTHO05D008129 2.2e-72 275.8 166 82.5
Phvul.002G280900 Phaseolus vulgaris HOM05D006645 ORTHO05D008129 2.0e-57 226.1 165 69.1
VMungo0251G1538 Vigna mungo HOM05D006645 ORTHO05D008129 4.4e-57 224.9 165 67.9
Lj4g0018315 Lotus japonicus HOM05D006645 ORTHO05D008129 1.3e-56 223.4 167 70.1
Ca_10875_v3 Cicer arietinum L. HOM05D006645 ORTHO05D008129 1.4e-55 219.9 168 67.9
Lj1g0000604 Lotus japonicus HOM05D006645 ORTHO05D008129 2.4e-55 219.2 164 73.8
arahy.Tifrunner.gnm1.ann1.D72E2J Arachis hypogaea HOM05D006645 ORTHO05D008129 9.3e-55 217.2 166 68.1
Lalb_Chr08g0237591 Lupinus albus HOM05D006645 ORTHO05D008129 9.3e-55 217.2 167 67.1
Nn4g22122 Nelumbo nucifera HOM05D006645 ORTHO05D008129 9.3e-55 217.2 167 69.5
Psat5g055480 Pisum sativum HOM05D006645 ORTHO05D008129 9.3e-55 217.2 169 68.0
Gohir.A12G194100 Gossypium hirsutum HOM05D006645 ORTHO05D008129 1.6e-54 216.5 165 67.9
Manes.06G127300 Manihot esculenta HOM05D006645 ORTHO05D008129 1.6e-54 216.5 167 67.1
arahy.Tifrunner.gnm1.ann1.1BW3L6 Arachis hypogaea HOM05D006645 ORTHO05D008129 2.1e-54 216.1 166 68.1
Duzib205G0637 Durio zibethinus HOM05D006645 ORTHO05D008129 2.7e-54 215.7 162 69.1
Glyma.05G199700 Glycine max HOM05D006645 ORTHO05D008129 2.7e-54 215.7 152 71.1
Thecc.03G141700 Theobroma cacao HOM05D006645 ORTHO05D008129 2.7e-54 215.7 161 68.9
Duzib084G1311 Durio zibethinus HOM05D006645 ORTHO05D008129 4.6e-54 214.9 162 69.1
RcHm_v2.0_Chr7g0188541 Rosa chinensis HOM05D006645 ORTHO05D008129 7.8e-54 214.2 164 65.9
Glyma.08G007200 Glycine max HOM05D006645 ORTHO05D008129 1.0e-53 213.8 167 66.5
Gohir.D12G196500 Gossypium hirsutum HOM05D006645 ORTHO05D008129 1.3e-53 213.4 165 67.3
TAR371G0070 Trochodendron aralioides HOM05D006645 ORTHO05D008129 1.3e-53 213.4 166 67.5
Cc04_g05780 Coffea canephora HOM05D006645 ORTHO05D008129 1.7e-53 213.0 167 67.1
COL.COLO4_37268 Corchorus olitorius HOM05D006645 ORTHO05D008129 1.7e-53 213.0 162 69.1
FAN13G1824 Fragaria x ananassa HOM05D006645 ORTHO05D008129 1.7e-53 213.0 164 64.6
Gorai.008G211100 Gossypium raimondii HOM05D006645 ORTHO05D008129 3.0e-53 212.2 165 67.3
arahy.Tifrunner.gnm1.ann1.Z544U3 Arachis hypogaea HOM05D006645 ORTHO05D008129 1.5e-52 209.9 169 66.9
FvH4_5g09700 Fragaria vesca HOM05D006645 ORTHO05D008129 1.5e-52 209.9 164 64.6
Medtr3g098520 Medicago truncatula HOM05D006645 ORTHO05D008129 5.6e-52 208.0 166 64.5
CiPaw.12G000500 Carya illinoinensis HOM05D006645 ORTHO05D008129 9.6e-52 207.2 161 64.6
TAR622G0574 Trochodendron aralioides HOM05D006645 ORTHO05D008129 2.8e-51 205.7 166 64.5
arahy.Tifrunner.gnm1.ann1.FT61ID Arachis hypogaea HOM05D006645 ORTHO05D008129 3.6e-51 205.3 169 65.7
Potri.015G108100 Populus trichocarpa HOM05D006645 ORTHO05D008129 3.6e-51 205.3 168 63.7
TWI14G0928 Tripterygium wilfordii HOM05D006645 ORTHO05D008129 4.8e-51 204.9 169 63.9
Sabra15G0128400 Salix brachista HOM05D006645 ORTHO05D008129 8.1e-51 204.1 170 62.9
Hma1.2p1_0452F.1_g155930 Hydrangea macrophylla HOM05D006645 ORTHO05D008129 1.4e-50 203.4 156 63.5
Haze_07089 Corylus avellana HOM05D006645 ORTHO05D008129 3.1e-50 202.2 194 59.8
Sabra15G0130800 Salix brachista HOM05D006645 ORTHO05D008129 3.1e-50 202.2 168 63.1
Ciclev10032925m.g Citrus clementina HOM05D006645 ORTHO05D008129 4.0e-50 201.8 169 64.5
CAN.G1008.52 Capsicum annuum HOM05D006645 ORTHO05D008129 1.5e-49 199.9 151 66.9
Dinv13711 Davidia involucrata HOM05D006645 ORTHO05D008129 1.5e-49 199.9 147 69.4
TWI39G0437 Tripterygium wilfordii HOM05D006645 ORTHO05D008129 2.6e-49 199.1 171 63.7
MD06G1129100 Malus domestica HOM05D006645 ORTHO05D008129 3.4e-49 198.7 167 61.7
Atru.chr6.1936 Acer truncatum HOM05D006645 ORTHO05D008129 9.9e-49 197.2 167 63.5
Cpa.g.sc2215.2 Carica papaya HOM05D006645 ORTHO05D008129 1.7e-48 196.4 166 60.8
MD14G1146000 Malus domestica HOM05D006645 ORTHO05D008129 1.7e-48 196.4 168 63.1
Solyc03g118130.3 Solanum lycopersicum HOM05D006645 ORTHO05D008129 1.7e-48 196.4 161 62.7
Peaxi162Scf00314g00728 Petunia axillaris HOM05D006645 ORTHO05D008129 3.8e-48 195.3 166 62.7
Sopen03g037030 Solanum pennellii HOM05D006645 ORTHO05D008129 3.8e-48 195.3 163 62.0
ATR0582G272 Amborella trichopoda HOM05D006645 ORTHO05D008129 4.9e-48 194.9 167 58.7
CSS0045487 Camellia sinensis var. sinensis HOM05D006645 ORTHO05D008129 6.4e-48 194.5 164 62.2
CSS0048618 Camellia sinensis var. sinensis HOM05D006645 ORTHO05D008129 6.4e-48 194.5 164 62.2
Lsat_1_v5_gn_4_84301 Lactuca sativa HOM05D006645 ORTHO05D008129 6.4e-48 194.5 170 62.4
vmacro19114 Vaccinium macrocarpon HOM05D006645 ORTHO05D008129 6.4e-48 194.5 171 62.6
vmacro19194 Vaccinium macrocarpon HOM05D006645 ORTHO05D008129 6.4e-48 194.5 171 62.6
PGSC0003DMG400014238 Solanum tuberosum HOM05D006645 ORTHO05D008129 1.1e-47 193.7 164 60.4
Nitab4.5_0000976g0110 Nicotiana tabacum HOM05D006645 ORTHO05D008129 1.9e-47 193.0 166 63.3
Migut.I00665 Erythranthe guttata HOM05D006645 ORTHO05D008129 3.2e-47 192.2 160 61.9
CDE05G2456 Ceratophyllum demersum HOM05D006645 ORTHO05D008129 4.2e-47 191.8 150 66.0
CDE05G3351 Ceratophyllum demersum HOM05D006645 ORTHO05D008129 4.2e-47 191.8 150 66.0
AUR62032209 Chenopodium quinoa HOM05D006645 ORTHO05D008129 5.4e-47 191.4 169 61.5
MSTRG.22813 Avicennia marina HOM05D006645 ORTHO05D008129 7.1e-47 191.0 152 63.8
HanXRQChr09g0273781 Helianthus annuus HOM05D006645 ORTHO05D008129 1.6e-46 189.9 165 61.2
Sc22g0003260 Simmondsia chinensis HOM05D006645 ORTHO05D008129 2.1e-46 189.5 154 62.3
Oeu013667.1 Olea europaea HOM05D006645 ORTHO05D008129 2.7e-46 189.1 155 64.5
Prupe.5G140400 Prunus persica HOM05D006645 ORTHO05D008129 2.7e-46 189.1 169 58.0
SalBow7G0306 Salvia bowleyana HOM05D006645 ORTHO05D008129 2.7e-46 189.1 162 59.9
DCAR_016335 Daucus carota HOM05D006645 ORTHO05D008129 6.0e-46 188.0 157 59.2
AUR62043377 Chenopodium quinoa HOM05D006645 ORTHO05D008129 2.3e-45 186.0 169 60.4
EL10Ac5g11273 Beta vulgaris HOM05D006645 ORTHO05D008129 5.1e-45 184.9 170 60.0
Ah.11g046980 Amaranthus hybridus HOM05D006645 ORTHO05D008129 6.6e-45 184.5 167 61.7
Aqoxy3G01868 Aquilegia oxysepala HOM05D006645 ORTHO05D008129 1.1e-44 183.7 162 58.6
PSO017G3202 Papaver somniferum HOM05D006645 ORTHO05D008129 1.1e-44 183.7 173 57.8
THA.LOC104811555 Tarenaya hassleriana HOM05D006645 ORTHO05D008129 1.5e-44 183.3 165 57.6
PSO478G4148 Papaver somniferum HOM05D006645 ORTHO05D008129 4.3e-44 181.8 173 57.2
CARHR257180 Cardamine hirsuta HOM05D006645 ORTHO05D008129 2.8e-43 179.1 166 58.4
CsaV3_1G000140 Cucumis sativus L. HOM05D006645 ORTHO05D008129 2.8e-43 179.1 134 64.9
ClCG06G018300 Citrullus lanatus HOM05D006645 ORTHO05D008129 3.6e-43 178.7 132 65.9
ECA232G4473 Erigeron canadensis HOM05D000001 ORTHO05D001247 3.6e-43 178.7 143 63.6
SGA_v2.0_scaffold37G14674 Striga asiatica HOM05D006645 ORTHO05D008129 1.1e-42 177.2 164 56.1
Nitab4.5_0010893g0030 Nicotiana tabacum HOM05D006645 ORTHO05D008129 1.8e-42 176.4 165 60.0
Thhalv10014834m.g Eutrema salsugineum HOM05D006645 ORTHO05D008129 2.4e-42 176.0 164 56.1
Carub.0008s1101 Capsella rubella HOM05D006645 ORTHO05D008129 3.1e-42 175.6 163 57.7
BcaC01g06063 Brassica carinata HOM05D006645 ORTHO05D008129 5.3e-42 174.9 106 73.6
C03p19310 Brassica napus HOM05D006645 ORTHO05D008129 5.3e-42 174.9 106 73.6
BolC3t14317H Brassica oleracea HOM05D006645 ORTHO05D008129 5.3e-42 174.9 106 73.6
BcaC01g06113 Brassica carinata HOM05D006645 ORTHO05D008129 1.2e-41 173.7 102 74.5
GSVIVG01008662001 Vitis vinifera HOM05D006645 ORTHO05D008129 1.2e-41 173.7 97 82.5
AT5G51010 Arabidopsis thaliana HOM05D006645 ORTHO05D008129 1.5e-41 173.3 161 55.3
A03p16420 Brassica napus HOM05D006645 ORTHO05D008129 1.5e-41 173.3 104 73.1
BraA03t10932Z Brassica rapa HOM05D006645 ORTHO05D008129 1.5e-41 173.3 104 73.1
Sp6g13160 Schrenkiella parvula HOM05D006645 ORTHO05D008129 1.5e-41 173.3 149 57.0
Actinidia18289 Actinidia chinensis HOM05D006645 ORTHO05D008129 2.6e-41 172.6 164 55.5
Dinv23234 Davidia involucrata HOM05D006645 ORTHO05D008129 2.6e-41 172.6 100 78.0
Aa31LG3G7470 Aethionema arabicum HOM05D006645 ORTHO05D008129 3.4e-41 172.2 147 59.9
PGR142G3652 Punica granatum HOM05D006645 ORTHO05D008129 4.5e-41 171.8 156 57.1
AL8G25220 Arabidopsis lyrata HOM05D006645 ORTHO05D008129 5.8e-41 171.4 163 55.8
Zm00001eb113350 Zea mays HOM05D006645 ORTHO05D008129 1.3e-40 170.2 163 55.8
Rhsim08G0198600 Rhododendron simsii HOM05D006645 ORTHO05D008129 4.9e-40 168.3 107 72.0
Hund10027 Selenicereus undatus HOM05D006645 ORTHO05D008129 8.4e-40 167.5 151 59.6
Lj5C86G18 Lonicera japonica HOM05D006645 ORTHO05D008129 5.4e-39 164.9 144 60.4
Os11g0528500 Oryza sativa ssp. japonica HOM05D006645 ORTHO05D008129 7.1e-39 164.5 110 69.1
Eucgr.K02190 Eucalyptus grandis HOM05D006645 ORTHO05D008129 2.1e-38 162.9 150 57.3
unitig_52.g17484 Utricularia gibba HOM05D006645 ORTHO05D008129 7.9e-38 161.0 128 57.8
SMO116G0387 Selaginella moellendorffii HOM05D006645 ORTHO05D008129 8.7e-37 157.5 131 62.6
Sed0010334 Sechium edule HOM05D006645 ORTHO05D008129 9.6e-36 154.1 143 59.4
QL10p000304 Quercus lobata HOM05D006645 ORTHO05D008129 2.8e-35 152.5 289 36.7
HPP92_024388 Vanilla planifolia HOM05D002498 ORTHO05D008129 5.3e-34 148.3 124 58.1
MELO3C026168.2 Cucumis melo HOM05D006645 ORTHO05D008129 3.4e-33 145.6 108 64.8
Lj9A488T61 Lonicera japonica HOM05D006645 ORTHO05D008129 4.5e-33 145.2 169 49.7
Actinidia25512 Actinidia chinensis HOM05D006645 ORTHO05D008129 2.9e-32 142.5 138 55.8
Mapoly0188s0012 Marchantia polymorpha HOM05D006645 ORTHO05D008129 7.1e-31 137.9 156 48.1
Pp3c20_8260 Physcomitrium patens HOM05D006645 ORTHO05D008129 3.5e-30 135.6 138 54.3
Glyma.06G163200 Glycine max HOM05D006645 ORTHO05D008129 1.8e-29 133.3 82 89.0
Glyma.17G183301 Glycine max HOM05D006645 ORTHO05D008129 2.3e-29 132.9 65 95.4
SEGI_04043 Sequoiadendron giganteum HOM05D006645 ORTHO05D008129 4.3e-28 128.6 164 42.1
Potri.012G109700 Populus trichocarpa HOM05D006645 ORTHO05D008129 6.1e-14 81.6 93 54.8
Pp3c2_6110 Physcomitrium patens HOM05D006645 ORTHO05D008129 1.0e-08 64.3 41 53.7
Pp3c14_10490 Physcomitrium patens HOM05D006645 ORTHO05D008129 2.2e-08 63.2 68 39.7
SMO140G0084 Selaginella moellendorffii HOM05D006062 ORTHO05D007613 2.2e-08 63.2 98 37.8
AagrBONN_evm.TU.Sc2ySwM_362.1750 Anthoceros agrestis HOM05D006645 ORTHO05D008129 6.5e-08 61.6 61 47.5
Gohir.A02G139100 Gossypium hirsutum HOM05D006062 ORTHO05D007613 6.5e-08 61.6 99 35.4
Gohir.D03G049700 Gossypium hirsutum HOM05D006062 ORTHO05D007613 8.5e-08 61.2 99 34.3
Gorai.003G051200 Gossypium raimondii HOM05D006062 ORTHO05D007613 8.5e-08 61.2 99 34.3
Duzib177G0391 Durio zibethinus HOM05D006062 ORTHO05D007613 1.1e-07 60.8 99 34.3
LjContig00222g0021869 Lotus japonicus HOM05D006062 ORTHO05D007613 3.2e-07 59.3 60 41.7
SMO165G0067 Selaginella moellendorffii HOM05D006645 ORTHO05D008129 3.2e-07 59.3 42 52.4
CBR_g41690 Chara braunii HOM05D006062 ORTHO05D008129 4.2e-07 58.9 73 41.1
MSTRG.26938 Avicennia marina HOM05D006062 ORTHO05D007613 5.5e-07 58.5 86 36.0
Os08g0162600 Oryza sativa ssp. japonica HOM05D006062 ORTHO05D007613 5.5e-07 58.5 107 33.6
Hund02967 Selenicereus undatus HOM05D006062 ORTHO05D007613 5.5e-07 58.5 96 33.3
Cre24.g755197 Chlamydomonas reinhardtii HOM05D006645 ORTHO05D008129 7.2e-07 58.2 72 38.9
Thecc.05G207500 Theobroma cacao HOM05D006062 ORTHO05D007613 7.2e-07 58.2 99 32.3
HanXRQChr04g0105241 Helianthus annuus HOM05D006062 ORTHO05D007613 9.4e-07 57.8 60 41.7
HPP92_025509 Vanilla planifolia HOM05D006062 ORTHO05D007613 9.4e-07 57.8 57 45.6
HPP92_025526 Vanilla planifolia HOM05D006062 ORTHO05D007613 9.4e-07 57.8 57 45.6
arahy.Tifrunner.gnm1.ann1.GUDI7G Arachis hypogaea HOM05D006062 ORTHO05D007613 1.2e-06 57.4 89 34.8
arahy.Tifrunner.gnm1.ann1.GZNV26 Arachis hypogaea HOM05D006062 ORTHO05D007613 1.2e-06 57.4 89 34.8
Duzib106G1742 Durio zibethinus HOM05D006062 ORTHO05D007613 1.2e-06 57.4 99 31.3
QL09p026245 Quercus lobata HOM05D006062 ORTHO05D007613 1.2e-06 57.4 54 42.6
ATR0829G005 Amborella trichopoda HOM05D006062 ORTHO05D007613 1.6e-06 57.0 89 36.0
ECA233G2527 Erigeron canadensis HOM05D006062 ORTHO05D007613 1.6e-06 57.0 100 33.0
Glyma.01G229800 Glycine max HOM05D006062 ORTHO05D007613 1.6e-06 57.0 99 33.3
MD07G1305400 Malus domestica HOM05D006062 ORTHO05D007613 2.1e-06 56.6 101 33.7
Manes.08G164800 Manihot esculenta HOM05D006062 ORTHO05D007613 2.1e-06 56.6 60 41.7
Prupe.2G323500 Prunus persica HOM05D006062 ORTHO05D007613 2.1e-06 56.6 99 33.3
PGR142G0857 Punica granatum HOM05D006062 ORTHO05D007613 2.1e-06 56.6 99 34.3
Aqoxy3G02060 Aquilegia oxysepala HOM05D006062 ORTHO05D007613 2.7e-06 56.2 54 44.4
Cpa.g.sc39.53 Carica papaya HOM05D006062 ORTHO05D007613 2.7e-06 56.2 99 32.3
Sed0000932 Sechium edule HOM05D006062 ORTHO05D007613 2.7e-06 56.2 87 36.8
TWI60G0061 Tripterygium wilfordii HOM05D006062 ORTHO05D007613 2.7e-06 56.2 99 35.4
VMungo0720G1055 Vigna mungo HOM05D006062 ORTHO05D007613 2.7e-06 56.2 60 41.7
Actinidia28267 Actinidia chinensis HOM05D006062 ORTHO05D007613 3.6e-06 55.8 60 41.7
Eucgr.K00099 Eucalyptus grandis HOM05D006062 ORTHO05D007613 3.6e-06 55.8 99 31.3
PSO063G5144 Papaver somniferum HOM05D006062 ORTHO05D007613 3.6e-06 55.8 101 34.7
PSO782G5695 Papaver somniferum HOM05D006062 ORTHO05D007613 3.6e-06 55.8 101 34.7
Cre12.g510400 Chlamydomonas reinhardtii HOM05D006062 ORTHO05D007613 4.7e-06 55.5 39 56.4
MELO3C005432.2 Cucumis melo HOM05D006062 ORTHO05D007613 4.7e-06 55.5 87 35.6
SalBow4G0173 Salvia bowleyana HOM05D006062 ORTHO05D007613 4.7e-06 55.5 91 33.0
unitig_52.g17696 Utricularia gibba HOM05D006062 ORTHO05D007613 4.7e-06 55.5 41 51.2
Zm00001eb415470 Zea mays HOM05D006062 ORTHO05D007613 4.7e-06 55.5 107 30.8
Atru.chr12.2018 Acer truncatum HOM05D006062 ORTHO05D007613 6.1e-06 55.1 99 32.3
CDE02G0767 Ceratophyllum demersum HOM05D006062 ORTHO05D007613 6.1e-06 55.1 95 29.5
THA.LOC104820874 Tarenaya hassleriana HOM05D006062 ORTHO05D007613 6.1e-06 55.1 99 33.3
Cfa015906 Carpinus fangiana HOM05D006062 ORTHO05D007613 7.9e-06 54.7 60 40.0
DCAR_014570 Daucus carota HOM05D006062 ORTHO05D007613 7.9e-06 54.7 98 32.7


User provided reference genes

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