Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.04G201300 Glycine max HOM05D003971 ORTHO05D004762 2.1e-262 908.7 534 100.0
Glyma.06G163900 Glycine max HOM05D003971 ORTHO05D004762 3.7e-254 881.3 534 84.6
Phvul.009G161300 Phaseolus vulgaris HOM05D003971 ORTHO05D004762 6.1e-241 837.4 537 79.7
arahy.Tifrunner.gnm1.ann1.9UH1TF Arachis hypogaea HOM05D003971 ORTHO05D004762 3.5e-212 741.9 542 69.4
Lj1g0015188 Lotus japonicus HOM05D003971 ORTHO05D004762 5.0e-211 738.0 537 71.7
Lalb_Chr11g0069181 Lupinus albus HOM05D003971 ORTHO05D004762 6.5e-211 737.6 535 71.6
arahy.Tifrunner.gnm1.ann1.86AC6C Arachis hypogaea HOM05D003971 ORTHO05D004762 7.2e-210 734.2 562 67.1
Psat5g055040 Pisum sativum HOM05D003971 ORTHO05D004762 8.3e-206 720.7 543 68.7
Medtr3g098600 Medicago truncatula HOM05D003971 ORTHO05D004762 1.3e-203 713.4 528 70.1
Duzib084G0567 Durio zibethinus HOM05D003971 ORTHO05D004762 1.4e-189 666.8 534 64.8
Cpa.g.sc13.168 Carica papaya HOM05D003971 ORTHO05D004762 1.7e-187 659.8 517 63.6
GSVIVG01008647001 Vitis vinifera HOM05D003971 ORTHO05D004762 3.0e-187 659.1 530 63.8
Ciclev10031176m.g Citrus clementina HOM05D003971 ORTHO05D004762 6.6e-187 657.9 523 63.9
CANSAT56G1634 Cannabis sativa HOM05D003971 ORTHO05D004762 1.1e-186 657.1 563 61.5
MD06G1130900 Malus domestica HOM05D003971 ORTHO05D004762 2.5e-186 656.0 529 64.3
Cfa018707 Carpinus fangiana HOM05D003971 ORTHO05D004762 5.6e-186 654.8 518 64.1
Potri.012G108100 Populus trichocarpa HOM05D003971 ORTHO05D004762 1.6e-185 653.3 540 64.4
Prupe.5G142100 Prunus persica HOM05D003971 ORTHO05D004762 1.6e-185 653.3 526 64.3
MD14G1147500 Malus domestica HOM05D003971 ORTHO05D004762 2.3e-184 649.4 529 63.9
Gohir.D03G110400 Gossypium hirsutum HOM05D003971 ORTHO05D004762 9.9e-183 644.0 516 63.4
Gohir.A03G056200 Gossypium hirsutum HOM05D003971 ORTHO05D004762 1.7e-182 643.3 530 62.5
Aqoxy1G00170 Aquilegia oxysepala HOM05D003971 ORTHO05D004762 8.3e-182 641.0 530 61.1
TAR622G0096 Trochodendron aralioides HOM05D003971 ORTHO05D004762 1.1e-181 640.6 527 62.0
Thecc.03G140300 Theobroma cacao HOM05D003971 ORTHO05D004762 3.2e-181 639.0 514 64.2
Ca_10878_v3 Cicer arietinum L. HOM05D003971 ORTHO05D004762 4.1e-181 638.6 455 72.1
CsaV3_1G009920 Cucumis sativus L. HOM05D003971 ORTHO05D004762 5.4e-181 638.3 532 61.8
MELO3C002386.2 Cucumis melo HOM05D003971 ORTHO05D004762 7.1e-181 637.9 532 62.2
CSS0040569 Camellia sinensis var. sinensis HOM05D003971 ORTHO05D004762 6.0e-180 634.8 534 62.2
Sed0008211 Sechium edule HOM05D003971 ORTHO05D004762 1.7e-179 633.3 530 61.7
Gorai.003G116700 Gossypium raimondii HOM05D003971 ORTHO05D004762 2.3e-179 632.9 521 62.4
Atru.chr6.1916 Acer truncatum HOM05D003971 ORTHO05D004762 3.3e-178 629.0 516 62.2
CiPaw.11G001000 Carya illinoinensis HOM05D003971 ORTHO05D004762 3.3e-178 629.0 489 64.6
FvH4_5g09480 Fragaria vesca HOM05D003971 ORTHO05D004762 1.4e-176 623.6 527 60.9
FAN18G1571 Fragaria x ananassa HOM05D003971 ORTHO05D004762 3.1e-176 622.5 527 61.1
Nn4g22021 Nelumbo nucifera HOM05D003971 ORTHO05D004762 4.0e-176 622.1 530 60.2
Sabra12G0079300 Salix brachista HOM05D003971 ORTHO05D004762 4.4e-175 618.6 551 62.4
TWI39G0398 Tripterygium wilfordii HOM05D003971 ORTHO05D004762 5.8e-175 618.2 527 61.7
HanXRQChr05g0155401 Helianthus annuus HOM05D003971 ORTHO05D004762 9.9e-175 617.5 529 59.9
ClCG03G004040 Citrullus lanatus HOM05D003971 ORTHO05D004762 1.7e-174 616.7 545 60.4
QL10p000509 Quercus lobata HOM05D003971 ORTHO05D004762 8.4e-174 614.4 602 55.1
FAN13G1049 Fragaria x ananassa HOM05D003971 ORTHO05D004762 3.2e-173 612.5 527 59.6
Lsat_1_v5_gn_5_10121 Lactuca sativa HOM05D003971 ORTHO05D004762 7.1e-173 611.3 561 57.2
Cc04_g05880 Coffea canephora HOM05D003971 ORTHO05D004762 2.3e-171 606.3 558 57.2
Migut.I00618 Erythranthe guttata HOM05D003971 ORTHO05D004762 5.1e-171 605.1 557 57.1
FAN04G0277 Fragaria x ananassa HOM05D003971 ORTHO05D004762 5.1e-171 605.1 528 59.5
ECA246G0638 Erigeron canadensis HOM05D003971 ORTHO05D004762 8.7e-171 604.4 550 57.1
RcHm_v2.0_Chr7g0188721 Rosa chinensis HOM05D003971 ORTHO05D004762 4.3e-170 602.1 511 60.3
Sabra15G0126400 Salix brachista HOM05D003971 ORTHO05D004762 7.3e-170 601.3 536 63.1
Actinidia18301 Actinidia chinensis HOM05D003971 ORTHO05D004762 1.6e-169 600.1 530 59.4
Lj9C486T6 Lonicera japonica HOM05D003971 ORTHO05D004762 3.6e-169 599.0 530 57.9
TWI23G0486 Tripterygium wilfordii HOM05D003971 ORTHO05D004762 4.7e-169 598.6 530 59.1
PSO384G2792 Papaver somniferum HOM05D003971 ORTHO05D004762 1.4e-168 597.0 532 58.1
Gohir.D07G051000 Gossypium hirsutum HOM05D003971 ORTHO05D004762 2.4e-168 596.3 519 59.3
PGR083G2644 Punica granatum HOM05D003971 ORTHO05D004762 3.1e-168 595.9 513 58.9
Peaxi162Scf01168g00013 Petunia axillaris HOM05D003971 ORTHO05D004762 6.9e-168 594.7 580 54.8
Gorai.001G054100 Gossypium raimondii HOM05D003971 ORTHO05D004762 1.2e-167 594.0 519 59.2
VMungo1309G0830 Vigna mungo HOM05D003971 ORTHO05D004762 1.5e-167 593.6 301 94.4
Gohir.A07G046700 Gossypium hirsutum HOM05D003971 ORTHO05D004762 4.4e-167 592.0 520 58.7
Solyc12g042200.2 Solanum lycopersicum HOM05D003971 ORTHO05D004762 4.4e-167 592.0 572 54.9
Nitab4.5_0002584g0020 Nicotiana tabacum HOM05D003971 ORTHO05D004762 1.3e-166 590.5 571 55.7
Sopen12g021240 Solanum pennellii HOM05D003971 ORTHO05D004762 1.3e-166 590.5 561 55.3
MSTRG.22849 Avicennia marina HOM05D003971 ORTHO05D004762 1.1e-165 587.4 569 55.0
PSO339G4968 Papaver somniferum HOM05D003971 ORTHO05D004762 1.4e-165 587.0 532 57.5
Hund02509 Selenicereus undatus HOM05D003971 ORTHO05D004762 4.2e-165 585.5 531 57.8
Nitab4.5_0008403g0010 Nicotiana tabacum HOM05D003971 ORTHO05D004762 1.2e-164 583.9 562 55.3
Hund10040 Selenicereus undatus HOM05D003971 ORTHO05D004762 1.2e-164 583.9 531 56.7
vmacro19182 Vaccinium macrocarpon HOM05D003971 ORTHO05D004762 1.3e-161 573.9 521 57.2
Eucgr.K00065 Eucalyptus grandis HOM05D003971 ORTHO05D004762 2.1e-161 573.2 530 56.6
THA.LOC104825039 Tarenaya hassleriana HOM05D003971 ORTHO05D004762 2.1e-161 573.2 533 55.7
TPR.G25960 Trifolium pratense HOM05D003971 ORTHO05D004762 3.6e-161 572.4 538 60.0
Haze_07098 Corylus avellana HOM05D003971 ORTHO05D004762 4.8e-161 572.0 601 54.7
Rhsim08G0197300 Rhododendron simsii HOM05D003971 ORTHO05D004762 4.8e-161 572.0 563 54.4
Thhalv10013209m.g Eutrema salsugineum HOM05D003971 ORTHO05D004762 6.2e-161 571.6 521 57.2
ClCG06G018370 Citrullus lanatus HOM05D003971 ORTHO05D004762 8.1e-161 571.2 539 56.2
Sp6g13140 Schrenkiella parvula HOM05D003971 ORTHO05D004762 1.8e-160 570.1 539 56.0
AT5G50970 Arabidopsis thaliana HOM05D003971 ORTHO05D004762 9.0e-160 567.8 548 55.8
C03p19320 Brassica napus HOM05D003971 ORTHO05D004762 1.2e-159 567.4 520 61.0
BolC3t14318H Brassica oleracea HOM05D003971 ORTHO05D004762 2.6e-159 566.2 520 60.6
AL8G25160 Arabidopsis lyrata HOM05D003971 ORTHO05D004762 5.8e-159 565.1 547 54.8
BraA03t10933Z Brassica rapa HOM05D003971 ORTHO05D004762 5.8e-159 565.1 534 58.6
VMungo0251G1950 Vigna mungo HOM05D000512 ORTHO05D000861 9.9e-159 564.3 528 57.0
A03p16430 Brassica napus HOM05D003971 ORTHO05D004762 4.9e-158 562.0 523 62.7
FAN08G0744 Fragaria x ananassa HOM05D003971 ORTHO05D004762 4.9e-158 562.0 550 54.4
Lj5C87G6 Lonicera japonica HOM05D003971 ORTHO05D004762 1.1e-157 560.8 534 55.8
Lj4g0027413 Lotus japonicus HOM05D003971 ORTHO05D004762 1.4e-157 560.5 537 57.4
Sed0022051 Sechium edule HOM05D003971 ORTHO05D004762 2.4e-157 559.7 526 56.3
Carub.0008s1099 Capsella rubella HOM05D003971 ORTHO05D004762 3.2e-157 559.3 534 56.6
CARHR257220 Cardamine hirsuta HOM05D003971 ORTHO05D004762 1.2e-156 557.4 538 55.2
MBI07_g41261_MAGBIO Magnolia biondii HOM05D003971 ORTHO05D004762 1.6e-156 557.0 520 57.1
EL10Ac5g11286 Beta vulgaris HOM05D003971 ORTHO05D004762 2.7e-156 556.2 550 60.0
AUR62041701 Chenopodium quinoa HOM05D003971 ORTHO05D004762 7.9e-156 554.7 347 73.5
AUR62041703 Chenopodium quinoa HOM05D003971 ORTHO05D004762 6.7e-155 551.6 347 73.2
CsaV3_1G000070 Cucumis sativus L. HOM05D003971 ORTHO05D004762 6.7e-155 551.6 534 54.9
AUR62009537 Chenopodium quinoa HOM05D003971 ORTHO05D004762 1.9e-154 550.1 545 61.7
DCAR_021401 Daucus carota HOM05D003971 ORTHO05D004762 6.9e-152 541.6 562 50.9
Sc22g0003380 Simmondsia chinensis HOM05D003971 ORTHO05D004762 1.2e-151 540.8 535 52.3
Manes.06G126801 Manihot esculenta HOM05D003971 ORTHO05D004762 3.4e-151 539.3 473 59.0
Medtr8g100180 Medicago truncatula HOM05D003971 ORTHO05D004762 1.9e-149 533.5 537 54.0
Phvul.002G281600 Phaseolus vulgaris HOM05D003971 ORTHO05D004762 9.3e-149 531.2 532 54.1
BcaC01g06062 Brassica carinata HOM05D003971 ORTHO05D004762 7.9e-148 528.1 520 58.1
Lsat_1_v5_gn_4_84501 Lactuca sativa HOM05D003971 ORTHO05D004762 5.1e-147 525.4 551 51.2
PGSC0003DMG400014242 Solanum tuberosum HOM05D003971 ORTHO05D004762 5.1e-147 525.4 561 50.4
Oeu046606.1 Olea europaea HOM05D003971 ORTHO05D004762 1.5e-146 523.9 486 55.8
Sopen03g037130 Solanum pennellii HOM05D003971 ORTHO05D004762 9.6e-146 521.2 563 50.3
Peaxi162Scf00314g00638 Petunia axillaris HOM05D003971 ORTHO05D004762 5.8e-143 511.9 526 50.8
TPR.G12938 Trifolium pratense HOM05D003971 ORTHO05D004762 5.8e-143 511.9 344 67.7
MELO3C026159.2 Cucumis melo HOM05D003971 ORTHO05D004762 3.8e-142 509.2 347 68.9
DCAR_016341 Daucus carota HOM05D003971 ORTHO05D004762 1.1e-141 507.7 531 50.8
ATR0582G269 Amborella trichopoda HOM05D003971 ORTHO05D004762 1.3e-139 500.7 494 52.4
MBI03_g13042_MAGBIO Magnolia biondii HOM05D003971 ORTHO05D004762 5.1e-139 498.8 347 68.0
SHI34430 Sapria himalayana HOM05D003971 ORTHO05D004762 5.9e-135 485.3 521 50.7
unitig_21.g20335 Utricularia gibba HOM05D003971 ORTHO05D004762 2.5e-133 479.9 540 48.9
Zm00001eb210690 Zea mays HOM05D003971 ORTHO05D004762 2.3e-131 473.4 527 49.1
HPP92_028338 Vanilla planifolia HOM05D003971 ORTHO05D004762 3.0e-131 473.0 524 48.5
SEGI_34710 Sequoiadendron giganteum HOM05D003971 ORTHO05D004762 6.3e-129 465.3 337 66.8
Ah.11g046910 Amaranthus hybridus HOM05D001469 ORTHO05D001648 4.1e-128 462.6 320 67.8
Zm00001eb064630 Zea mays HOM05D003971 ORTHO05D004762 4.1e-128 462.6 527 53.1
Potri.015G106300 Populus trichocarpa HOM05D003971 ORTHO05D004762 1.1e-125 454.5 431 59.4
Cc03_g15560 Coffea canephora HOM05D003971 ORTHO05D004762 1.7e-121 440.7 529 49.3
Nitab4.5_0000976g0020 Nicotiana tabacum HOM05D003971 ORTHO05D004762 7.7e-119 431.8 473 49.5
COL.COLO4_37254 Corchorus olitorius HOM05D003971 ORTHO05D004762 2.9e-118 429.9 501 49.9
Aa31LG3G7450 Aethionema arabicum HOM05D003971 ORTHO05D004762 3.6e-116 422.9 268 74.3
Mapoly0008s0248 Marchantia polymorpha HOM05D003971 ORTHO05D004762 2.0e-114 417.2 347 55.9
Aa31LG10G8100 Aethionema arabicum HOM05D003971 ORTHO05D004762 2.6e-114 416.8 346 56.1
HanXRQChr17g0565911 Helianthus annuus HOM05D003971 ORTHO05D004762 2.2e-113 413.7 487 46.8
Carub.0006s1829 Capsella rubella HOM05D003971 ORTHO05D004762 3.7e-113 412.9 348 55.5
AT5G19920 Arabidopsis thaliana HOM05D003971 ORTHO05D004762 1.1e-112 411.4 350 55.4
BcaC04g19398 Brassica carinata HOM05D003971 ORTHO05D004762 3.1e-112 409.8 348 54.6
Sp6g24460 Schrenkiella parvula HOM05D003971 ORTHO05D004762 5.3e-112 409.1 348 55.2
AL6G31450 Arabidopsis lyrata HOM05D003971 ORTHO05D004762 9.1e-112 408.3 348 54.6
C09p56130 Brassica napus HOM05D003971 ORTHO05D004762 4.5e-111 406.0 348 54.9
BolC9t58480H Brassica oleracea HOM05D003971 ORTHO05D004762 4.5e-111 406.0 348 54.9
A10p19810 Brassica napus HOM05D003971 ORTHO05D004762 5.9e-111 405.6 348 55.2
BraA10t44057Z Brassica rapa HOM05D003971 ORTHO05D004762 5.9e-111 405.6 348 55.2
BcaB08g36556 Brassica carinata HOM05D003971 ORTHO05D004762 1.0e-110 404.8 348 54.3
Thhalv10013007m.g Eutrema salsugineum HOM05D003971 ORTHO05D004762 3.8e-110 402.9 349 55.0
SEGI_10226 Sequoiadendron giganteum HOM05D003971 ORTHO05D004762 3.2e-109 399.8 278 66.2
Pp3c11_18210 Physcomitrium patens HOM05D003971 ORTHO05D004762 1.2e-108 397.9 353 55.2
Sc04g0000200 Simmondsia chinensis HOM05D003971 ORTHO05D004762 8.0e-108 395.2 415 50.1
A02p05920 Brassica napus HOM05D003971 ORTHO05D004762 1.1e-104 384.8 347 53.6
BraA02t05544Z Brassica rapa HOM05D003971 ORTHO05D004762 1.1e-104 384.8 347 53.6
BNapus_Darmor_BZH_scaffold_38p01950 Brassica napus HOM05D003971 ORTHO05D004762 3.1e-104 383.3 348 53.2
BolC2t06996H Brassica oleracea HOM05D003971 ORTHO05D004762 3.1e-104 383.3 348 53.2
CARHR192940 Cardamine hirsuta HOM05D003971 ORTHO05D004762 5.9e-103 379.0 300 57.7
AagrBONN_evm.TU.Sc2ySwM_117.1595 Anthoceros agrestis HOM05D003971 ORTHO05D004762 1.6e-100 370.9 529 39.9
RcHm_v2.0_Chr1g0373351 Rosa chinensis HOM05D003971 ORTHO05D004762 1.2e-98 364.8 228 73.2
HPP92_011657 Vanilla planifolia HOM05D003971 ORTHO05D004762 5.7e-98 362.5 225 71.6
Solyc03g118220.3 Solanum lycopersicum HOM05D003971 ORTHO05D004762 2.4e-96 357.1 456 45.2
Eucgr.L01129 Eucalyptus grandis HOM05D003971 ORTHO05D004762 5.0e-94 349.4 211 76.8
Eucgr.L01124 Eucalyptus grandis HOM05D003971 ORTHO05D004762 1.4e-91 341.3 211 75.4
Actinidia25522 Actinidia chinensis HOM05D000512 ORTHO05D004762 2.7e-87 327.0 202 76.2
CBR_g3752 Chara braunii HOM05D003971 ORTHO05D004762 9.2e-80 302.0 298 49.7
SGA_v2.0_scaffold74G24722 Striga asiatica HOM05D003971 ORTHO05D004762 1.8e-59 234.6 548 32.8
Dinv13723 Davidia involucrata HOM05D003971 ORTHO05D004762 2.4e-56 224.2 286 45.5
CDE02G0369 Ceratophyllum demersum HOM05D003971 ORTHO05D004762 1.0e-54 218.8 131 77.1
Oeu061253.1 Olea europaea HOM05D003971 ORTHO05D004762 5.6e-53 213.0 336 40.5
Lalb_Chr12g0202501 Lupinus albus HOM05D003971 ORTHO05D004762 4.0e-51 206.8 163 60.7
SalBow7G2108 Salvia bowleyana HOM05D003971 ORTHO05D004762 4.0e-51 206.8 565 30.8
HPP92_011707 Vanilla planifolia HOM05D003971 ORTHO05D004762 5.1e-46 189.9 309 40.5
Hma1.2p1_0664F.1_g199006 Hydrangea macrophylla HOM05D003971 ORTHO05D004762 3.3e-45 187.2 118 71.2
Dinv23223 Davidia involucrata HOM05D003971 ORTHO05D004762 2.6e-42 177.6 247 44.5
SMO334G0050 Selaginella moellendorffii HOM05D003971 ORTHO05D004762 6.4e-41 172.9 259 35.9
Oeu012846.1 Olea europaea HOM05D003971 ORTHO05D004433 4.6e-39 166.8 132 60.6
Solyc03g118210.3 Solanum lycopersicum HOM05D003971 ORTHO05D004762 1.8e-38 164.9 106 71.7
CSS0006697 Camellia sinensis var. sinensis HOM05D003971 ORTHO05D004762 5.8e-34 149.8 83 84.3
CSS0040784 Camellia sinensis var. sinensis HOM05D003971 ORTHO05D004762 3.0e-30 137.5 81 80.2
Dinv13722 Davidia involucrata HOM05D000475 ORTHO05D000343 1.5e-26 125.2 67 88.1
Lalb_Chr12g0202511 Lupinus albus HOM05D003971 ORTHO05D004762 4.5e-26 123.6 116 50.9
Dinv23224 Davidia involucrata HOM05D000475 ORTHO05D000343 6.5e-25 119.8 65 87.7
Os08g0511500 Oryza sativa ssp. japonica HOM05D003971 ORTHO05D004762 1.9e-21 108.2 94 58.5
CDE02G2184 Ceratophyllum demersum HOM05D003971 ORTHO05D004762 2.7e-15 87.8 244 31.1
Os03g0851600 Oryza sativa ssp. japonica HOM05D003971 ORTHO05D004762 1.1e-11 75.9 233 27.9
Ah.11g046900 Amaranthus hybridus HOM05D003971 ORTHO05D004762 7.7e-10 69.7 103 42.7
Aa31LG3G7440 Aethionema arabicum HOM05D003971 ORTHO05D004762 3.2e-08 64.3 59 57.6


User provided reference genes

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