Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.04G195500 Glycine max HOM05D005744 ORTHO05D007503 7.1e-189 663.7 314 100.0
Glyma.06G170500 Glycine max HOM05D005744 ORTHO05D007503 6.6e-179 630.6 314 93.6
VMungo1309G1043 Vigna mungo HOM05D005744 ORTHO05D007503 1.6e-169 599.4 318 88.4
Phvul.009G166600 Phaseolus vulgaris HOM05D005744 ORTHO05D007503 6.9e-168 594.0 318 87.1
Lj1g0015277 Lotus japonicus HOM05D005744 ORTHO05D007503 1.4e-160 569.7 318 84.9
Medtr3g074980 Medicago truncatula HOM05D005744 ORTHO05D007503 1.1e-157 560.1 320 83.4
Psat5g140680 Pisum sativum HOM05D005744 ORTHO05D007503 5.5e-157 557.8 319 83.4
arahy.Tifrunner.gnm1.ann1.DQ5P63 Arachis hypogaea HOM05D005744 ORTHO05D007503 9.3e-157 557.0 319 82.1
Ca_24503_v3 Cicer arietinum L. HOM05D005744 ORTHO05D007503 1.6e-156 556.2 320 83.1
arahy.Tifrunner.gnm1.ann1.SJIN4P Arachis hypogaea HOM05D005744 ORTHO05D007503 3.5e-156 555.1 319 81.8
Lalb_Chr08g0237111 Lupinus albus HOM05D005744 ORTHO05D007503 3.9e-155 551.6 319 80.3
TPR.G26152 Trifolium pratense HOM05D005744 ORTHO05D007503 9.6e-154 547.0 320 81.2
TPR.G12158 Trifolium pratense HOM05D005744 ORTHO05D007503 4.5e-151 538.1 320 80.9
Cfa018827 Carpinus fangiana HOM05D005744 ORTHO05D007503 1.1e-144 516.9 319 75.5
GSVIVG01008538001 Vitis vinifera HOM05D005744 ORTHO05D007503 1.4e-144 516.5 319 74.6
Manes.14G051500 Manihot esculenta HOM05D005744 ORTHO05D007503 3.1e-144 515.4 319 74.6
CiPaw.11G008100 Carya illinoinensis HOM05D005744 ORTHO05D007503 6.9e-144 514.2 319 74.3
Prupe.5G151700 Prunus persica HOM05D005744 ORTHO05D007503 3.4e-143 511.9 319 76.2
Potri.015G095400 Populus trichocarpa HOM05D005744 ORTHO05D007503 4.5e-143 511.5 316 74.7
COL.COLO4_28103 Corchorus olitorius HOM05D005744 ORTHO05D007503 5.9e-143 511.1 319 73.0
Sabra15G0116400 Salix brachista HOM05D005744 ORTHO05D007503 7.7e-143 510.8 316 74.7
QL10p003203 Quercus lobata HOM05D005744 ORTHO05D007503 1.1e-141 506.9 318 75.2
MD14G1157700 Malus domestica HOM05D005744 ORTHO05D007503 3.2e-141 505.4 317 73.5
Thecc.03G128600 Theobroma cacao HOM05D005744 ORTHO05D007503 7.2e-141 504.2 319 72.1
Ciclev10020324m.g Citrus clementina HOM05D005744 ORTHO05D007503 1.2e-140 503.4 316 73.1
Atru.chr9.1122 Acer truncatum HOM05D005744 ORTHO05D007503 4.6e-140 501.5 316 73.1
CSS0041302 Camellia sinensis var. sinensis HOM05D005744 ORTHO05D007503 4.3e-138 495.0 319 72.7
Gohir.A12G189400 Gossypium hirsutum HOM05D005744 ORTHO05D007503 5.7e-138 494.6 319 72.1
Sed0005313 Sechium edule HOM05D005744 ORTHO05D007503 1.3e-137 493.4 319 70.8
Gorai.008G206000 Gossypium raimondii HOM05D005744 ORTHO05D007503 1.7e-137 493.0 319 71.8
THA.LOC104825016 Tarenaya hassleriana HOM05D005744 ORTHO05D007503 2.2e-137 492.7 319 71.2
Gohir.D12G191700 Gossypium hirsutum HOM05D005744 ORTHO05D007503 1.1e-136 490.3 319 71.2
ClCG06G017860 Citrullus lanatus HOM05D005744 ORTHO05D007503 4.1e-136 488.4 319 71.5
CANSAT80G0573 Cannabis sativa HOM05D005744 ORTHO05D007503 6.9e-136 487.6 319 70.5
Actinidia33099 Actinidia chinensis HOM05D005744 ORTHO05D007503 2.0e-135 486.1 320 72.5
Nn3g16475 Nelumbo nucifera HOM05D005744 ORTHO05D007503 1.3e-134 483.4 316 70.3
Peaxi162Scf00074g00136 Petunia axillaris HOM05D005744 ORTHO05D007503 1.7e-134 483.0 318 70.4
Aqoxy3G01542 Aquilegia oxysepala HOM05D005744 ORTHO05D007503 2.9e-134 482.3 319 70.5
MELO3C026209.2 Cucumis melo HOM05D005744 ORTHO05D007503 1.4e-133 479.9 319 69.9
Eucgr.K02730 Eucalyptus grandis HOM05D005744 ORTHO05D007503 2.5e-133 479.2 316 70.9
Oeu010732.1 Olea europaea HOM05D005744 ORTHO05D007503 5.5e-133 478.0 319 70.2
MBI07_g31012_MAGBIO Magnolia biondii HOM05D005744 ORTHO05D007503 7.2e-133 477.6 311 72.3
CsaV3_1G000590 Cucumis sativus L. HOM05D005744 ORTHO05D007503 6.1e-132 474.6 302 71.5
HanXRQChr16g0498211 Helianthus annuus HOM05D005744 ORTHO05D007503 7.9e-132 474.2 319 68.0
Rhsim08G0189700 Rhododendron simsii HOM05D005744 ORTHO05D007503 7.9e-132 474.2 316 70.3
RhsimUnG0231400 Rhododendron simsii HOM05D005744 ORTHO05D007503 7.9e-132 474.2 316 70.3
CARHR232280 Cardamine hirsuta HOM05D005744 ORTHO05D007503 2.3e-131 472.6 316 66.8
MSTRG.13706 Avicennia marina HOM05D005744 ORTHO05D007503 5.1e-131 471.5 319 68.7
RcHm_v2.0_Chr7g0190291 Rosa chinensis HOM05D005744 ORTHO05D007503 5.1e-131 471.5 315 69.2
DCAR_021616 Daucus carota HOM05D005744 ORTHO05D007503 1.1e-130 470.3 314 70.4
PGR044G2189 Punica granatum HOM05D005744 ORTHO05D007503 1.1e-130 470.3 282 77.3
Carub.0007s1619 Capsella rubella HOM05D005744 ORTHO05D007503 2.6e-130 469.2 316 66.1
Cc08_g16880 Coffea canephora HOM05D005744 ORTHO05D007503 3.3e-130 468.8 316 68.4
ECA232G3603 Erigeron canadensis HOM05D005744 ORTHO05D007503 3.3e-130 468.8 318 67.9
BraA03t14628Z Brassica rapa HOM05D005744 ORTHO05D007503 4.4e-130 468.4 316 67.1
EL10As4g23384 Beta vulgaris HOM05D005744 ORTHO05D007503 5.7e-130 468.0 319 69.3
Haze_07221 Corylus avellana HOM05D005744 ORTHO05D007503 5.7e-130 468.0 377 61.5
BcaC06g32852 Brassica carinata HOM05D005744 ORTHO05D007503 1.3e-129 466.8 316 66.8
C07p53850 Brassica napus HOM05D005744 ORTHO05D007503 1.3e-129 466.8 316 66.8
FAN18G3767 Fragaria x ananassa HOM05D005744 ORTHO05D007503 1.3e-129 466.8 315 68.9
Sp7g22860 Schrenkiella parvula HOM05D005744 ORTHO05D007503 1.3e-129 466.8 316 66.5
FAN08G2910 Fragaria x ananassa HOM05D005744 ORTHO05D007503 2.2e-129 466.1 315 68.6
Solyc08g083260.3 Solanum lycopersicum HOM05D005744 ORTHO05D007503 2.2e-129 466.1 318 68.6
FvH4_5g08230 Fragaria vesca HOM05D005744 ORTHO05D007503 2.8e-129 465.7 315 69.2
AL7G28320 Arabidopsis lyrata HOM05D005744 ORTHO05D007503 3.7e-129 465.3 316 65.5
Ah.02g114920 Amaranthus hybridus HOM05D005744 ORTHO05D007503 4.8e-129 464.9 347 66.0
Sopen08g031450 Solanum pennellii HOM05D005744 ORTHO05D007503 4.8e-129 464.9 318 68.2
PGSC0003DMG400012114 Solanum tuberosum HOM05D005744 ORTHO05D007503 4.8e-129 464.9 318 68.6
A03p55610 Brassica napus HOM05D005744 ORTHO05D007503 8.2e-129 464.2 316 67.1
BolC7t45875H Brassica oleracea HOM05D005744 ORTHO05D007503 1.1e-128 463.8 316 66.5
Lsat_1_v5_gn_4_80081 Lactuca sativa HOM05D005744 ORTHO05D007503 1.8e-128 463.0 319 66.5
Nitab4.5_0002720g0090 Nicotiana tabacum HOM05D005744 ORTHO05D007503 2.0e-127 459.5 340 65.0
Thhalv10025348m.g Eutrema salsugineum HOM05D005744 ORTHO05D007503 4.5e-127 458.4 302 66.9
Migut.E00304 Erythranthe guttata HOM05D005744 ORTHO05D007503 1.3e-126 456.8 319 68.0
FAN07G2643 Fragaria x ananassa HOM05D005744 ORTHO05D007503 5.0e-126 454.9 328 66.5
PSO339G3552 Papaver somniferum HOM05D005744 ORTHO05D007503 5.0e-126 454.9 319 65.5
PSO782G2798 Papaver somniferum HOM05D005744 ORTHO05D007503 8.5e-126 454.1 319 65.5
SalBow5G0293 Salvia bowleyana HOM05D005744 ORTHO05D007503 1.5e-125 453.4 330 65.5
Os01g0101300 Oryza sativa ssp. japonica HOM05D005744 ORTHO05D007503 5.5e-125 451.4 318 65.7
PSO801G0019 Papaver somniferum HOM05D005744 ORTHO05D007503 7.2e-125 451.1 319 65.2
HPP92_020223 Vanilla planifolia HOM05D005744 ORTHO05D007503 2.7e-124 449.1 319 65.5
Sc04g0000680 Simmondsia chinensis HOM05D005744 ORTHO05D007503 3.6e-124 448.7 300 70.0
Actinidia25578 Actinidia chinensis HOM05D005744 ORTHO05D007503 8.0e-124 447.6 280 73.9
ATR0561G060 Amborella trichopoda HOM05D005744 ORTHO05D007503 3.0e-123 445.7 319 64.9
FAN13G0489 Fragaria x ananassa HOM05D005744 ORTHO05D007503 4.0e-123 445.3 355 60.8
RcHm_v2.0_Chr4g0409241 Rosa chinensis HOM05D005744 ORTHO05D007503 4.0e-123 445.3 314 66.9
Aa31LG7G10960 Aethionema arabicum HOM05D005744 ORTHO05D007503 1.5e-122 443.4 305 68.9
Duzib205G1133 Durio zibethinus HOM05D005744 ORTHO05D007503 1.8e-120 436.4 316 65.2
Dinv11169 Davidia involucrata HOM05D005744 ORTHO05D007503 7.0e-120 434.5 319 67.4
CDE05G2332 Ceratophyllum demersum HOM05D005744 ORTHO05D007503 4.5e-119 431.8 316 62.7
AUR62025939 Chenopodium quinoa HOM05D005744 ORTHO05D007503 4.5e-119 431.8 280 71.8
AUR62029618 Chenopodium quinoa HOM05D005744 ORTHO05D007503 1.7e-118 429.9 280 71.1
TAR633G0019 Trochodendron aralioides HOM05D005744 ORTHO05D007503 1.9e-117 426.4 274 71.9
Zm00001eb354570 Zea mays HOM05D005744 ORTHO05D007503 9.4e-117 424.1 315 62.9
vmacro19203 Vaccinium macrocarpon HOM05D005744 ORTHO05D007503 5.7e-114 414.8 371 55.8
CAN.G567.98 Capsicum annuum HOM05D005744 ORTHO05D007503 4.8e-113 411.8 334 61.4
Lj9A478G92 Lonicera japonica HOM05D005744 ORTHO05D007503 1.8e-112 409.8 285 68.4
FvH4_4g11820 Fragaria vesca HOM05D005744 ORTHO05D007503 3.8e-110 402.1 314 60.5
TAR629G2476 Trochodendron aralioides HOM05D005744 ORTHO05D007503 8.0e-108 394.4 226 79.6
Pp3c8_11540 Physcomitrium patens HOM05D005744 ORTHO05D007503 4.1e-104 382.1 304 57.6
SMO364G0648 Selaginella moellendorffii HOM05D005744 ORTHO05D007503 4.1e-104 382.1 304 56.9
Mapoly0024s0037 Marchantia polymorpha HOM05D005744 ORTHO05D007503 1.6e-103 380.2 309 57.0
AT4G24880 Arabidopsis thaliana HOM05D005744 ORTHO05D007503 8.6e-102 374.4 232 70.3
SGA_v2.0_scaffold22G09828 Striga asiatica HOM05D005744 ORTHO05D007503 2.3e-99 366.3 309 59.5
PSO478G2520 Papaver somniferum HOM05D005744 ORTHO05D007503 2.0e-98 363.2 230 70.9
SalBow5G5674 Salvia bowleyana HOM05D005744 ORTHO05D007503 1.9e-93 346.7 325 54.2
unitig_27.g25288 Utricularia gibba HOM05D005744 ORTHO05D007503 1.2e-92 344.0 311 54.3
Cpa.g.sc2981.2 Carica papaya HOM05D005744 ORTHO05D007503 3.6e-92 342.4 201 74.6
FAN12G3536 Fragaria x ananassa HOM05D005744 ORTHO05D007503 6.8e-91 338.2 213 70.9
FAN12G3591 Fragaria x ananassa HOM05D005744 ORTHO05D007503 7.5e-90 334.7 213 70.4
SEGI_05259 Sequoiadendron giganteum HOM05D005744 ORTHO05D007503 1.0e-78 297.7 200 66.5
MCO07G390 Micromonas commoda HOM05D005744 ORTHO05D007503 3.5e-71 272.7 340 40.9
SEGI_21905 Sequoiadendron giganteum HOM05D005744 ORTHO05D007503 2.5e-69 266.5 183 66.1
Nitab4.5_0000479g0030 Nicotiana tabacum HOM05D005744 ORTHO05D007503 2.9e-65 253.1 161 71.4
AagrBONN_evm.TU.Sc2ySwM_344.2997 Anthoceros agrestis HOM05D005744 ORTHO05D007503 6.0e-63 245.4 229 51.1
PRCOL_00001155 Prasinoderma coloniale HOM05D005744 ORTHO05D007503 7.9e-55 218.4 298 41.6
Cre16.g666000 Chlamydomonas reinhardtii HOM05D005744 ORTHO05D007503 2.5e-53 213.4 454 30.8
Eucgr.L02977 Eucalyptus grandis HOM05D005744 ORTHO05D007503 8.1e-52 208.4 131 71.8
SHI06365 Sapria himalayana HOM05D005744 ORTHO05D007503 2.3e-46 190.3 191 49.2
COL.COLO4_31215 Corchorus olitorius HOM05D005744 ORTHO05D007503 5.1e-46 189.1 129 71.3
GSVIVG01008540001 Vitis vinifera HOM05D005744 ORTHO05D007503 2.4e-43 180.3 119 73.9
HanXRQChr10g0289761 Helianthus annuus HOM05D005744 ORTHO05D007503 2.6e-42 176.8 202 47.0
QL10p003231 Quercus lobata HOM05D005744 ORTHO05D007503 8.7e-38 161.8 117 66.7
RcHm_v2.0_Chr4g0407951 Rosa chinensis HOM05D005744 ORTHO05D007503 8.2e-36 155.2 145 53.8
Lsat_1_v5_gn_8_77640 Lactuca sativa HOM05D005744 ORTHO05D007503 6.9e-27 125.6 92 65.2
RcHm_v2.0_Chr4g0407901 Rosa chinensis HOM05D005744 ORTHO05D007503 3.9e-22 109.8 251 33.9
Lsat_1_v5_gn_8_150141 Lactuca sativa HOM05D005744 ORTHO05D048266 8.2e-20 102.1 120 44.2
TAR629G1577 Trochodendron aralioides HOM05D005744 ORTHO05D007503 4.4e-13 79.7 60 61.7
SEGI_17145 Sequoiadendron giganteum HOM05D005744 ORTHO05D007503 2.1e-07 60.8 72 47.2
HanXRQChr10g0289791 Helianthus annuus HOM05D005744 ORTHO05D048266 2.7e-07 60.5 39 66.7


User provided reference genes

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