Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.04G178500 Glycine max HOM05D003533 ORTHO05D004009 4.6e-32 140.6 69 100.0
Glyma.06G186200 Glycine max HOM05D003533 ORTHO05D004009 1.2e-27 125.9 70 91.4
Psat0s489g0040 Pisum sativum HOM05D003533 ORTHO05D004009 1.0e-23 112.8 70 81.4
Phvul.009G182200 Phaseolus vulgaris HOM05D003533 ORTHO05D004009 1.3e-23 112.5 71 83.1
Ca_16210_v3 Cicer arietinum L. HOM05D003533 ORTHO05D004009 2.5e-22 108.2 70 78.6
TPR.G31485 Trifolium pratense HOM05D003533 ORTHO05D004009 5.6e-22 107.1 70 78.6
Lj1g0014022 Lotus japonicus HOM05D003533 ORTHO05D004009 1.6e-21 105.5 72 76.4
Medtr3g078420 Medicago truncatula HOM05D003533 ORTHO05D004009 2.1e-21 105.1 72 75.0
TWI15G0955 Tripterygium wilfordii HOM05D003533 ORTHO05D004009 3.8e-18 94.4 73 67.1
Glyma.05G033600 Glycine max HOM05D003533 ORTHO05D004009 8.4e-18 93.2 79 62.0
Phvul.003G196800 Phaseolus vulgaris HOM05D003533 ORTHO05D004009 1.4e-17 92.4 79 62.0
Medtr4g106500 Medicago truncatula HOM05D003533 ORTHO05D004009 4.2e-17 90.9 75 66.7
TWI81G0654 Tripterygium wilfordii HOM05D003533 ORTHO05D004009 4.2e-17 90.9 76 61.8
Lj4g0015145 Lotus japonicus HOM05D003533 ORTHO05D004009 7.1e-17 90.1 79 59.5
Oeu005690.1 Olea europaea HOM05D003533 ORTHO05D004009 7.1e-17 90.1 75 62.7
Glyma.17G093500 Glycine max HOM05D003533 ORTHO05D004009 2.1e-16 88.6 82 58.5
Thecc.03G004200 Theobroma cacao HOM05D003533 ORTHO05D004009 2.1e-16 88.6 78 65.4
Oeu005054.1 Olea europaea HOM05D003533 ORTHO05D004009 3.5e-16 87.8 75 62.7
QL03p067197 Quercus lobata HOM05D003533 ORTHO05D004009 4.6e-16 87.4 76 63.2
Thecc.03G004000 Theobroma cacao HOM05D003533 ORTHO05D004009 1.3e-15 85.9 78 64.1
HanXRQChr09g0237871 Helianthus annuus HOM05D003533 ORTHO05D004009 1.7e-15 85.5 71 60.6
Rhsim12G0161500 Rhododendron simsii HOM05D003533 ORTHO05D004009 1.7e-15 85.5 76 60.5
Duzib084G0973 Durio zibethinus HOM05D003533 ORTHO05D004009 3.0e-15 84.7 81 59.3
Manes.06G100300 Manihot esculenta HOM05D003533 ORTHO05D004009 6.6e-15 83.6 77 57.1
TAR622G1413 Trochodendron aralioides HOM05D003533 ORTHO05D004009 6.6e-15 83.6 75 61.3
unitig_62.g23572 Utricularia gibba HOM05D006519 ORTHO05D008306 6.6e-15 83.6 76 59.2
TPR.G37447 Trifolium pratense HOM05D003533 ORTHO05D004009 1.1e-14 82.8 76 63.2
vmacro16587 Vaccinium macrocarpon HOM05D003533 ORTHO05D004009 1.1e-14 82.8 75 58.7
CSS0013527 Camellia sinensis var. sinensis HOM05D003533 ORTHO05D004009 1.5e-14 82.4 80 56.2
CSS0016862 Camellia sinensis var. sinensis HOM05D003533 ORTHO05D004009 1.5e-14 82.4 80 56.2
Manes.14G070400 Manihot esculenta HOM05D003533 ORTHO05D004009 1.9e-14 82.0 76 56.6
TAR629G1875 Trochodendron aralioides HOM05D003533 ORTHO05D004009 1.9e-14 82.0 76 60.5
Hma1.2p1_0002F.1_g002860 Hydrangea macrophylla HOM05D003533 ORTHO05D004009 2.5e-14 81.6 73 60.3
ECA247G1125 Erigeron canadensis HOM05D003533 ORTHO05D004009 3.3e-14 81.3 78 53.8
QL10p012332 Quercus lobata HOM05D003533 ORTHO05D004009 3.3e-14 81.3 76 56.6
CANSAT54G2961 Cannabis sativa HOM05D003533 ORTHO05D004009 4.3e-14 80.9 79 55.7
Hma1.2p1_0160F.1_g070540 Hydrangea macrophylla HOM05D003533 ORTHO05D004009 7.3e-14 80.1 76 60.5
FAN17G1844 Fragaria x ananassa HOM05D003533 ORTHO05D004009 9.6e-14 79.7 74 56.8
Lalb_Chr12g0201361 Lupinus albus HOM05D003533 ORTHO05D004009 9.6e-14 79.7 77 57.1
Rhsim12G0161400 Rhododendron simsii HOM05D003533 ORTHO05D004009 9.6e-14 79.7 70 58.6
FAN22G0766 Fragaria x ananassa HOM05D003533 ORTHO05D004009 1.3e-13 79.3 74 56.8
Gohir.D05G321600 Gossypium hirsutum HOM05D003533 ORTHO05D004009 1.3e-13 79.3 76 56.6
Gorai.009G345100 Gossypium raimondii HOM05D003533 ORTHO05D004009 1.3e-13 79.3 76 56.6
Lsat_1_v5_gn_1_12101 Lactuca sativa HOM05D003533 ORTHO05D004009 1.3e-13 79.3 83 53.0
Aqoxy3G03117 Aquilegia oxysepala HOM05D003533 ORTHO05D004009 1.6e-13 79.0 80 58.8
FAN07G1024 Fragaria x ananassa HOM05D003533 ORTHO05D004009 1.6e-13 79.0 74 56.8
Gohir.A05G319400 Gossypium hirsutum HOM05D003533 ORTHO05D004009 1.6e-13 79.0 76 56.6
BraA09t41332Z Brassica rapa HOM05D003533 ORTHO05D004009 2.8e-13 78.2 66 56.1
CiPaw.06G076000 Carya illinoinensis HOM05D003533 ORTHO05D004009 3.6e-13 77.8 76 57.9
CiPaw.06G076200 Carya illinoinensis HOM05D003533 ORTHO05D004009 3.6e-13 77.8 76 57.9
C08p42830 Brassica napus HOM05D003533 ORTHO05D004009 4.8e-13 77.4 66 54.5
BolC8t51839H Brassica oleracea HOM05D003533 ORTHO05D004009 4.8e-13 77.4 66 54.5
COL.COLO4_21432 Corchorus olitorius HOM05D003533 ORTHO05D004009 4.8e-13 77.4 82 56.1
Lalb_Chr12g0201351 Lupinus albus HOM05D003533 ORTHO05D004009 4.8e-13 77.4 68 58.8
COL.COLO4_37881 Corchorus olitorius HOM05D003533 ORTHO05D004009 8.1e-13 76.6 77 57.1
CiPaw.12G022900 Carya illinoinensis HOM05D003533 ORTHO05D004009 1.1e-12 76.3 80 55.0
FvH4_4g35190 Fragaria vesca HOM05D003533 ORTHO05D004009 1.1e-12 76.3 74 55.4
CiPaw.06G076100 Carya illinoinensis HOM05D003533 ORTHO05D004009 1.4e-12 75.9 76 56.6
RcHm_v2.0_Chr4g0444801 Rosa chinensis HOM05D003533 ORTHO05D004009 1.8e-12 75.5 74 54.1
Eucgr.B00337 Eucalyptus grandis HOM05D003533 ORTHO05D004009 3.1e-12 74.7 78 55.1
FAN12G1992 Fragaria x ananassa HOM05D003533 ORTHO05D004009 3.1e-12 74.7 74 54.1
CSS0048422 Camellia sinensis var. sinensis HOM05D003533 ORTHO05D004009 4.0e-12 74.3 66 62.1
PSO013G0065 Papaver somniferum HOM05D003533 ORTHO05D004009 4.0e-12 74.3 83 50.6
CiPaw.06G076300 Carya illinoinensis HOM05D003533 ORTHO05D004009 5.3e-12 73.9 76 55.3
Thecc.02G240400 Theobroma cacao HOM05D003533 ORTHO05D004009 5.3e-12 73.9 77 53.2
A09p59550 Brassica napus HOM05D003533 ORTHO05D004009 9.0e-12 73.2 84 48.8
AT1G19020 Arabidopsis thaliana HOM05D003533 ORTHO05D004009 1.5e-11 72.4 86 48.8
Nitab4.5_0002059g0090 Nicotiana tabacum HOM05D003533 ORTHO05D004009 1.5e-11 72.4 80 53.8
BcaB03g12939 Brassica carinata HOM05D003533 ORTHO05D004009 2.0e-11 72.0 79 51.9
PSO013G0048 Papaver somniferum HOM05D003533 ORTHO05D004009 2.0e-11 72.0 73 53.4
Peaxi162Scf01141g00003 Petunia axillaris HOM05D003533 ORTHO05D004009 2.0e-11 72.0 80 52.5
Migut.E00134 Erythranthe guttata HOM05D003533 ORTHO05D004009 2.6e-11 71.6 72 54.2
Migut.L01388 Erythranthe guttata HOM05D003533 ORTHO05D004009 2.6e-11 71.6 67 59.7
Rhsim12G0161300 Rhododendron simsii HOM05D003533 ORTHO05D004009 2.6e-11 71.6 69 53.6
AL1G31580 Arabidopsis lyrata HOM05D003533 ORTHO05D004009 3.4e-11 71.2 84 51.2
BcaC07g41276 Brassica carinata HOM05D003533 ORTHO05D004009 3.4e-11 71.2 86 44.2
CARHR019640 Cardamine hirsuta HOM05D003533 ORTHO05D004009 3.4e-11 71.2 79 50.6
Migut.I00058 Erythranthe guttata HOM05D003533 ORTHO05D004009 3.4e-11 71.2 70 54.3
BcaB03g14468 Brassica carinata HOM05D003533 ORTHO05D004009 5.8e-11 70.5 82 52.4
Nitab4.5_0002059g0100 Nicotiana tabacum HOM05D003533 ORTHO05D004009 5.8e-11 70.5 75 54.7
A06p15230 Brassica napus HOM05D003533 ORTHO05D004009 7.6e-11 70.1 85 48.2
BraA06t24637Z Brassica rapa HOM05D003533 ORTHO05D004009 7.6e-11 70.1 85 48.2
MELO3C017124.2 Cucumis melo HOM05D003533 ORTHO05D004009 1.3e-10 69.3 82 50.0
Nitab4.5_0003386g0040 Nicotiana tabacum HOM05D003533 ORTHO05D004009 1.3e-10 69.3 71 59.2
BcaB07g31922 Brassica carinata HOM05D003533 ORTHO05D004009 1.7e-10 68.9 85 48.2
CAN.G159.12 Capsicum annuum HOM05D003533 ORTHO05D004009 1.7e-10 68.9 75 52.0
Eucgr.K02881 Eucalyptus grandis HOM05D003533 ORTHO05D004009 1.7e-10 68.9 78 46.2
FAN18G0586 Fragaria x ananassa HOM05D003533 ORTHO05D004009 2.2e-10 68.6 76 53.9
Ah.02g112790 Amaranthus hybridus HOM05D003533 ORTHO05D004009 2.9e-10 68.2 81 49.4
Thhalv10009213m.g Eutrema salsugineum HOM05D003533 ORTHO05D004009 2.9e-10 68.2 88 46.6
Nitab4.5_0002312g0100 Nicotiana tabacum HOM05D003533 ORTHO05D004009 2.9e-10 68.2 81 50.6
Hma1.2p1_0572F.1_g180980 Hydrangea macrophylla HOM05D003533 ORTHO05D004009 3.8e-10 67.8 78 46.2
Glyma.14G206400 Glycine max HOM05D003533 ORTHO05D004009 4.9e-10 67.4 46 80.4
Sed0002579 Sechium edule HOM05D003533 ORTHO05D004009 1.1e-09 66.2 79 48.1
FAN13G2147 Fragaria x ananassa HOM05D003533 ORTHO05D004009 1.4e-09 65.9 74 54.1
PGR083G0433 Punica granatum HOM05D003533 ORTHO05D004009 1.4e-09 65.9 83 47.0
SalBow2G1603 Salvia bowleyana HOM05D003533 ORTHO05D004009 1.4e-09 65.9 71 50.7
SalBow2G3186 Salvia bowleyana HOM05D003533 ORTHO05D004009 1.4e-09 65.9 71 50.7
Sp1g16980 Schrenkiella parvula HOM05D003533 ORTHO05D004009 1.4e-09 65.9 88 44.3
Sc04g0002090 Simmondsia chinensis HOM05D003533 ORTHO05D004009 1.4e-09 65.9 83 44.6
Solyc03g113810.1 Solanum lycopersicum HOM05D003533 ORTHO05D004009 1.9e-09 65.5 73 56.2
Sopen03g032860 Solanum pennellii HOM05D003533 ORTHO05D004009 1.9e-09 65.5 73 56.2
Cfa009093 Carpinus fangiana HOM05D003533 ORTHO05D004009 2.4e-09 65.1 86 45.3
Lsat_1_v5_gn_1_11280 Lactuca sativa HOM05D003533 ORTHO05D004009 2.4e-09 65.1 72 50.0
MBI14_g31145_MAGBIO Magnolia biondii HOM05D003533 ORTHO05D004009 2.4e-09 65.1 73 52.1
Aa31LG4G16780 Aethionema arabicum HOM05D003533 ORTHO05D004009 4.2e-09 64.3 79 48.1
Nitab4.5_0002312g0110 Nicotiana tabacum HOM05D003533 ORTHO05D004009 4.2e-09 64.3 76 52.6
PGSC0003DMG400022647 Solanum tuberosum HOM05D003533 ORTHO05D004009 5.4e-09 63.9 71 53.5
Zm00001eb254120 Zea mays HOM05D003533 ORTHO05D004009 5.4e-09 63.9 68 51.5
Actinidia19080 Actinidia chinensis HOM05D003533 ORTHO05D004009 7.1e-09 63.5 76 52.6
Ciclev10023101m.g Citrus clementina HOM05D003533 ORTHO05D004009 7.1e-09 63.5 81 44.4
MBI14_g31147_MAGBIO Magnolia biondii HOM05D003533 ORTHO05D004009 7.1e-09 63.5 74 54.1
Solyc05g006390.1 Solanum lycopersicum HOM05D003533 ORTHO05D004009 7.1e-09 63.5 73 50.7
Sopen05g002310 Solanum pennellii HOM05D003533 ORTHO05D004009 7.1e-09 63.5 73 50.7
A08p30040 Brassica napus HOM05D003533 ORTHO05D004009 9.3e-09 63.2 74 50.0
BraA08t34939Z Brassica rapa HOM05D003533 ORTHO05D004009 9.3e-09 63.2 74 50.0
CiPaw.11G032200 Carya illinoinensis HOM05D003533 ORTHO05D004009 9.3e-09 63.2 86 47.7
Cc11_g14120 Coffea canephora HOM05D003533 ORTHO05D004009 9.3e-09 63.2 75 49.3
Oeu017591.1 Olea europaea HOM05D003533 ORTHO05D004009 1.2e-08 62.8 74 48.6
Os02g0740600 Oryza sativa ssp. japonica HOM05D003533 ORTHO05D004009 1.2e-08 62.8 67 52.2
MD06G1181300 Malus domestica HOM05D003533 ORTHO05D004009 1.6e-08 62.4 74 52.7
MD16G1084900 Malus domestica HOM05D003533 ORTHO05D004009 1.6e-08 62.4 76 46.1
PGSC0003DMG400024583 Solanum tuberosum HOM05D003533 ORTHO05D004009 2.1e-08 62.0 73 54.8
Thhalv10010873m.g Eutrema salsugineum HOM05D003533 ORTHO05D004009 3.5e-08 61.2 77 48.1
Sp5g13860 Schrenkiella parvula HOM05D003533 ORTHO05D004009 3.5e-08 61.2 74 50.0
Cc11_g14110 Coffea canephora HOM05D003533 ORTHO05D004009 4.6e-08 60.8 83 48.2
CARHR156900 Cardamine hirsuta HOM05D003533 ORTHO05D004009 6.0e-08 60.5 77 48.1
MD14G1187200 Malus domestica HOM05D003533 ORTHO05D004009 6.0e-08 60.5 74 51.4
Sopen02g011150 Solanum pennellii HOM05D007037 ORTHO05D006691 6.0e-08 60.5 70 48.6
BcaC05g25801 Brassica carinata HOM05D003533 ORTHO05D004009 7.9e-08 60.1 85 43.5
BcaC05g25802 Brassica carinata HOM05D003533 ORTHO05D004009 7.9e-08 60.1 85 43.5
C05p17410 Brassica napus HOM05D003533 ORTHO05D004009 7.9e-08 60.1 85 43.5
C08p19120 Brassica napus HOM05D003533 ORTHO05D004009 7.9e-08 60.1 51 62.7
BolC5t30441H Brassica oleracea HOM05D003533 ORTHO05D004009 7.9e-08 60.1 85 43.5
Lsat_1_v5_gn_1_11220 Lactuca sativa HOM05D003533 ORTHO05D004009 7.9e-08 60.1 72 47.2
Carub.0005s1428 Capsella rubella HOM05D003533 ORTHO05D004009 1.3e-07 59.3 72 50.0
AL5G27512 Arabidopsis lyrata HOM05D003533 ORTHO05D004009 1.8e-07 58.9 74 48.6
HanXRQChr09g0271891 Helianthus annuus HOM05D003533 ORTHO05D004009 1.8e-07 58.9 65 55.4
Oeu060842.1 Olea europaea HOM05D003533 ORTHO05D004009 1.8e-07 58.9 75 46.7
Prupe.5G179600 Prunus persica HOM05D003533 ORTHO05D004009 2.3e-07 58.5 66 54.5
BolC8t49535H Brassica oleracea HOM05D003533 ORTHO05D004009 3.9e-07 57.8 51 60.8
Os06g0239200 Oryza sativa ssp. japonica HOM05D003533 ORTHO05D004009 3.9e-07 57.8 70 45.7
unitig_22.g6479 Utricularia gibba HOM05D003533 ORTHO05D004009 3.9e-07 57.8 77 48.1
ATR0712G042 Amborella trichopoda HOM05D003533 ORTHO05D004009 5.1e-07 57.4 80 42.5
DCAR_016506 Daucus carota HOM05D003533 ORTHO05D004009 5.1e-07 57.4 76 47.4
SalBow5G4118 Salvia bowleyana HOM05D003533 ORTHO05D004009 6.7e-07 57.0 34 76.5
HanXRQChr02g0043831 Helianthus annuus HOM05D003533 ORTHO05D222724 1.1e-06 56.2 52 55.8
Actinidia34961 Actinidia chinensis HOM05D003533 ORTHO05D004009 1.5e-06 55.8 76 47.4
DCAR_026103 Daucus carota HOM05D003533 ORTHO05D004009 1.5e-06 55.8 69 52.2
MBI14_g31148_MAGBIO Magnolia biondii HOM05D003533 ORTHO05D011084 1.5e-06 55.8 68 52.9
Prupe.1G261100 Prunus persica HOM05D003533 ORTHO05D004009 1.9e-06 55.5 80 43.8
CsaV3_1G001820 Cucumis sativus L. HOM05D003533 ORTHO05D004009 4.3e-06 54.3 80 43.8
ECA247G3580 Erigeron canadensis HOM05D003533 ORTHO05D004009 9.6e-06 53.1 74 40.5
Peaxi162Scf00331g00119 Petunia axillaris HOM05D007037 ORTHO05D006691 9.6e-06 53.1 76 42.1


User provided reference genes

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