Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.04G162600 Glycine max HOM05D003672 ORTHO05D004121 0.0e+00 1301.2 677 100.0
Glyma.06G203700 Glycine max HOM05D003672 ORTHO05D004121 0.0e+00 1162.5 680 90.9
Phvul.010G007200 Phaseolus vulgaris HOM05D003672 ORTHO05D004121 1.8e-282 975.7 664 79.4
VMungo0331G1159 Vigna mungo HOM05D003672 ORTHO05D004121 5.8e-273 944.1 659 78.1
Lj1g0027425 Lotus japonicus HOM05D003672 ORTHO05D004121 1.6e-241 839.7 704 66.9
TPR.G12189 Trifolium pratense HOM05D003672 ORTHO05D004121 1.1e-215 753.8 704 63.1
Ca_14345_v3 Cicer arietinum L. HOM05D003672 ORTHO05D004121 5.0e-208 728.4 730 59.3
Medtr3g025870 Medicago truncatula HOM05D003672 ORTHO05D004121 8.3e-203 711.1 689 61.1
Psat2g037720 Pisum sativum HOM05D003672 ORTHO05D004121 4.9e-195 685.3 691 59.8
arahy.Tifrunner.gnm1.ann1.SKH1UB Arachis hypogaea HOM05D003672 ORTHO05D004121 6.4e-195 684.9 704 58.2
arahy.Tifrunner.gnm1.ann1.N0JE3Z Arachis hypogaea HOM05D003672 ORTHO05D004121 1.9e-194 683.3 704 58.4
Lalb_Chr13g0302861 Lupinus albus HOM05D003672 ORTHO05D004121 2.3e-176 623.2 708 56.1
arahy.Tifrunner.gnm1.ann1.03S8MC Arachis hypogaea HOM05D003672 ORTHO05D004121 1.9e-170 603.6 716 53.8
arahy.Tifrunner.gnm1.ann1.R6LVKU Arachis hypogaea HOM05D003672 ORTHO05D004121 1.1e-167 594.3 716 52.4
Glyma.05G021000 Glycine max HOM05D003672 ORTHO05D004121 4.2e-162 575.9 708 54.9
Lalb_Chr07g0178301 Lupinus albus HOM05D003672 ORTHO05D004121 1.2e-145 521.2 686 51.7
QL10p019524 Quercus lobata HOM05D003672 ORTHO05D004121 1.6e-137 494.2 716 47.2
Atru.chr9.577 Acer truncatum HOM05D003672 ORTHO05D004121 1.5e-132 477.6 699 46.8
Ciclev10019089m.g Citrus clementina HOM05D003672 ORTHO05D004121 5.9e-132 475.7 718 46.4
Thecc.03G101900 Theobroma cacao HOM05D003672 ORTHO05D004121 8.5e-131 471.9 716 44.7
Lj4g0018287 Lotus japonicus HOM05D003672 ORTHO05D004121 1.4e-130 471.1 697 48.2
Prupe.5G205200 Prunus persica HOM05D003672 ORTHO05D004121 3.2e-130 469.9 733 44.9
Dinv22781 Davidia involucrata HOM05D003672 ORTHO05D004121 1.1e-125 454.9 720 43.2
RcHm_v2.0_Chr7g0183101 Rosa chinensis HOM05D003672 ORTHO05D004121 1.0e-123 448.4 713 43.6
Duzib084G0362 Durio zibethinus HOM05D003672 ORTHO05D004121 1.7e-123 447.6 702 44.2
Cfa019341 Carpinus fangiana HOM05D003672 ORTHO05D004121 1.2e-121 441.4 709 46.4
COL.COLO4_06856 Corchorus olitorius HOM05D003672 ORTHO05D004121 1.2e-121 441.4 722 43.4
FAN13G1740 Fragaria x ananassa HOM05D003672 ORTHO05D004121 2.1e-121 440.7 747 41.5
CANSAT80G1081 Cannabis sativa HOM05D003672 ORTHO05D004121 2.7e-121 440.3 723 43.6
Phvul.003G184800 Phaseolus vulgaris HOM05D003672 ORTHO05D004121 8.0e-121 438.7 500 58.4
Potri.015G057600 Populus trichocarpa HOM05D003672 ORTHO05D004121 1.4e-120 438.0 719 43.1
FAN08G3423 Fragaria x ananassa HOM05D003672 ORTHO05D004121 3.0e-120 436.8 772 41.2
FvH4_5g13830 Fragaria vesca HOM05D003672 ORTHO05D004121 1.2e-119 434.9 752 41.2
FAN18G3332 Fragaria x ananassa HOM05D003672 ORTHO05D004121 1.7e-118 431.0 752 41.0
Duzib205G1655 Durio zibethinus HOM05D003672 ORTHO05D004121 1.1e-117 428.3 716 43.0
TAR629G1848 Trochodendron aralioides HOM05D003672 ORTHO05D004121 7.0e-117 425.6 730 42.9
Cpa.g.sc94.57 Carica papaya HOM05D003672 ORTHO05D004121 1.2e-116 424.9 711 42.6
Sabra15G0083600 Salix brachista HOM05D003672 ORTHO05D004121 1.4e-112 411.4 723 41.9
Manes.06G084700 Manihot esculenta HOM05D003672 ORTHO05D004121 6.8e-112 409.1 693 41.1
MD14G1212000 Malus domestica HOM05D003672 ORTHO05D004121 2.6e-111 407.1 619 45.7
Haze_07732 Corylus avellana HOM05D003672 ORTHO05D004121 3.7e-110 403.3 822 39.8
Gorai.001G077200 Gossypium raimondii HOM05D003672 ORTHO05D004121 6.3e-110 402.5 696 43.0
Gohir.D07G073000 Gossypium hirsutum HOM05D003672 ORTHO05D004121 3.1e-109 400.2 696 42.7
Manes.14G085800 Manihot esculenta HOM05D003672 ORTHO05D004121 9.1e-109 398.7 713 41.0
TWI60G1197 Tripterygium wilfordii HOM05D003672 ORTHO05D004121 1.2e-108 398.3 714 42.4
CiPaw.12G008500 Carya illinoinensis HOM05D003672 ORTHO05D004121 4.5e-108 396.4 715 42.0
Gohir.A07G068500 Gossypium hirsutum HOM05D003672 ORTHO05D004121 1.9e-106 391.0 696 42.4
ClCG06G015630 Citrullus lanatus HOM05D003672 ORTHO05D004121 2.5e-106 390.6 704 39.6
TAR629G0952 Trochodendron aralioides HOM05D003672 ORTHO05D004121 2.5e-106 390.6 667 42.9
Sed0002350 Sechium edule HOM05D003672 ORTHO05D004121 5.2e-104 382.9 699 40.1
CSS0005049 Camellia sinensis var. sinensis HOM05D003672 ORTHO05D005912 3.4e-103 380.2 697 41.5
MELO3C017225.2 Cucumis melo HOM05D003672 ORTHO05D004121 1.3e-102 378.3 744 38.3
Actinidia18990 Actinidia chinensis HOM05D003672 ORTHO05D004121 4.9e-102 376.3 700 39.7
Nn4g23428 Nelumbo nucifera HOM05D003672 ORTHO05D004121 4.1e-101 373.2 736 39.9
Hma1.2p1_0060F.1_g033090 Hydrangea macrophylla HOM05D003672 ORTHO05D004121 5.4e-101 372.9 719 39.5
Peaxi162Scf00201g00329 Petunia axillaris HOM05D003672 ORTHO05D004121 5.9e-100 369.4 703 40.0
Nitab4.5_0009401g0050 Nicotiana tabacum HOM05D003672 ORTHO05D004121 5.0e-99 366.3 714 39.2
Actinidia35037 Actinidia chinensis HOM05D003672 ORTHO05D004121 9.5e-98 362.1 691 39.5
Nn3g17451 Nelumbo nucifera HOM05D003672 ORTHO05D004121 1.2e-97 361.7 736 37.9
Nitab4.5_0001485g0140 Nicotiana tabacum HOM05D003672 ORTHO05D004121 1.2e-97 361.7 705 39.1
CsaV3_1G002930 Cucumis sativus L. HOM05D003672 ORTHO05D004121 1.6e-97 361.3 704 38.9
Lj5C102T25 Lonicera japonica HOM05D003672 ORTHO05D004121 8.0e-97 359.0 698 39.5
TWI15G0151 Tripterygium wilfordii HOM05D003672 ORTHO05D004121 1.0e-96 358.6 719 40.3
Rhsim12G0148200 Rhododendron simsii HOM05D003672 ORTHO05D004121 4.0e-96 356.7 700 38.9
Eucgr.B00592 Eucalyptus grandis HOM05D003672 ORTHO05D004121 3.4e-95 353.6 714 39.4
Gohir.A12G182700 Gossypium hirsutum HOM05D003672 ORTHO05D004121 2.4e-93 347.4 708 38.0
CiPaw.11G053900 Carya illinoinensis HOM05D003672 ORTHO05D004121 5.4e-93 346.3 527 46.1
Gorai.008G199200 Gossypium raimondii HOM05D003672 ORTHO05D004121 5.4e-93 346.3 707 38.6
Solyc03g115100.4 Solanum lycopersicum HOM05D003672 ORTHO05D004121 5.4e-93 346.3 713 37.4
VMungo1215G2632 Vigna mungo HOM05D003672 ORTHO05D004121 1.7e-91 341.3 448 51.8
Sopen03g034170 Solanum pennellii HOM05D003672 ORTHO05D004121 2.3e-91 340.9 706 37.0
Oeu061164.2 Olea europaea HOM05D003672 ORTHO05D004121 3.9e-91 340.1 718 37.2
TWI81G0716 Tripterygium wilfordii HOM05D003672 ORTHO05D004121 1.5e-90 338.2 718 39.3
GSVIVG01007866001 Vitis vinifera HOM05D003672 ORTHO05D004121 2.5e-90 337.4 709 38.9
Dinv34068 Davidia involucrata HOM05D003672 ORTHO05D004121 9.5e-90 335.5 723 37.8
Dinv17414 Davidia involucrata HOM05D003672 ORTHO05D004121 1.8e-88 331.3 698 37.7
Oeu044870.1 Olea europaea HOM05D003672 ORTHO05D004121 2.3e-88 330.9 685 37.7
Cc00_g14840 Coffea canephora HOM05D003672 ORTHO05D004121 6.4e-86 322.8 699 37.9
Aqoxy1G00151 Aquilegia oxysepala HOM05D003672 ORTHO05D004121 1.4e-85 321.6 720 39.2
PGSC0003DMG400024637 Solanum tuberosum HOM05D003672 ORTHO05D004121 1.9e-85 321.2 705 37.2
vmacro16495 Vaccinium macrocarpon HOM05D003672 ORTHO05D004121 9.2e-85 318.9 716 37.3
MSTRG.22965 Avicennia marina HOM05D003672 ORTHO05D004121 8.6e-83 312.4 705 35.0
PGR083G2392 Punica granatum HOM05D003672 ORTHO05D004121 1.1e-82 312.0 684 38.2
DCAR_023172 Daucus carota HOM05D003672 ORTHO05D004121 2.5e-82 310.8 715 34.4
Gohir.D12G185800 Gossypium hirsutum HOM05D003672 ORTHO05D004121 1.6e-81 308.1 598 39.8
PSO478G1233 Papaver somniferum HOM05D003672 ORTHO05D004121 2.1e-81 307.8 641 38.5
PSO017G3206 Papaver somniferum HOM05D003672 ORTHO05D004121 1.1e-80 305.4 639 38.3
Migut.D01656 Erythranthe guttata HOM05D003672 ORTHO05D004121 2.3e-80 304.3 688 35.6
AUR62021559 Chenopodium quinoa HOM05D003672 ORTHO05D004121 1.5e-79 301.6 690 36.8
THA.LOC104819401 Tarenaya hassleriana HOM05D003672 ORTHO05D004121 6.4e-78 296.2 710 34.2
SalBow7G3172 Salvia bowleyana HOM05D003672 ORTHO05D004121 8.3e-78 295.8 714 35.7
EL10Ac5g11131 Beta vulgaris HOM05D003672 ORTHO05D004121 9.2e-77 292.4 683 36.6
MBI16_g38067_MAGBIO Magnolia biondii HOM05D003672 ORTHO05D004121 9.2e-77 292.4 728 34.2
GSVIVG01012221001 Vitis vinifera HOM05D003672 ORTHO05D004121 6.0e-76 289.7 695 35.3
AUR62008531 Chenopodium quinoa HOM05D003672 ORTHO05D004121 2.4e-72 277.7 691 34.3
Ah.02g114040 Amaranthus hybridus HOM05D003672 ORTHO05D004121 2.6e-71 274.2 700 35.3
Hund02585 Selenicereus undatus HOM05D003672 ORTHO05D004121 1.9e-69 268.1 708 35.2
AT5G61040 Arabidopsis thaliana HOM05D003672 ORTHO05D004121 3.0e-67 260.8 711 32.8
Hund09914 Selenicereus undatus HOM05D003672 ORTHO05D004121 6.6e-67 259.6 713 34.1
AL8G37700 Arabidopsis lyrata HOM05D003672 ORTHO05D004121 1.9e-66 258.1 709 31.6
Sp2g24340 Schrenkiella parvula HOM05D003672 ORTHO05D004121 2.1e-65 254.6 700 31.6
Carub.0008s2173 Capsella rubella HOM05D003672 ORTHO05D004121 8.1e-65 252.7 713 31.1
ECA232G2426 Erigeron canadensis HOM05D003672 ORTHO05D004121 1.8e-64 251.5 684 32.5
Thhalv10003875m.g Eutrema salsugineum HOM05D003672 ORTHO05D004121 2.6e-63 247.7 704 31.2
CSS0037619 Camellia sinensis var. sinensis HOM05D003672 ORTHO05D004121 3.4e-63 247.3 685 34.2
SGA_v2.0_scaffold25G10960 Striga asiatica HOM05D003672 ORTHO05D004121 1.4e-61 241.9 690 33.3
Ah.11g047770 Amaranthus hybridus HOM05D003672 ORTHO05D004121 4.2e-61 240.4 739 33.8
Actinidia31938 Actinidia chinensis HOM05D003672 ORTHO05D004121 1.0e-59 235.7 605 34.4
BraA03t13796Z Brassica rapa HOM05D003672 ORTHO05D004121 7.3e-58 229.6 715 30.3
Lj5A435T21 Lonicera japonica HOM05D003672 ORTHO05D004121 1.8e-56 224.9 701 30.4
CAN.G3169.1 Capsicum annuum HOM05D002946 ORTHO05D003299 9.0e-56 222.6 389 40.9
BcaC06g33181 Brassica carinata HOM05D003672 ORTHO05D004121 1.5e-55 221.9 709 29.8
HanXRQChr09g0270231 Helianthus annuus HOM05D003672 ORTHO05D004121 1.3e-54 218.8 671 30.6
HanXRQChr16g0502451 Helianthus annuus HOM05D003672 ORTHO05D004121 3.8e-54 217.2 675 32.1
CAN.G1228.24 Capsicum annuum HOM05D003672 ORTHO05D004121 6.4e-54 216.5 363 41.9
BolC7t45002H Brassica oleracea HOM05D003672 ORTHO05D004121 1.1e-53 215.7 711 30.8
Carub.0006s0690 Capsella rubella HOM05D003672 ORTHO05D004121 3.5e-52 210.7 708 29.9
CARHR274750 Cardamine hirsuta HOM05D003672 ORTHO05D004121 3.5e-52 210.7 695 29.9
Thhalv10013089m.g Eutrema salsugineum HOM05D003672 ORTHO05D004121 4.6e-52 210.3 708 29.1
QL03p074101 Quercus lobata HOM05D003672 ORTHO05D004121 1.8e-51 208.4 524 34.9
Rhsim12G0075200 Rhododendron simsii HOM05D003672 ORTHO05D004121 3.9e-51 207.2 762 30.3
C07p44780 Brassica napus HOM05D003672 ORTHO05D004121 2.8e-49 201.1 710 29.4
Rhsim12G0074700 Rhododendron simsii HOM05D003672 ORTHO05D004121 1.4e-48 198.7 765 29.8
Sed0025785 Sechium edule HOM05D003672 ORTHO05D004121 1.4e-48 198.7 560 33.0
A03p46740 Brassica napus HOM05D003672 ORTHO05D004121 3.1e-48 197.6 718 29.1
VMungo1215G3071 Vigna mungo HOM05D003672 ORTHO05D004121 4.0e-48 197.2 248 52.0
AL6G18360 Arabidopsis lyrata HOM05D003672 ORTHO05D004121 5.3e-48 196.8 709 28.1
Lsat_1_v5_gn_4_111040 Lactuca sativa HOM05D003672 ORTHO05D004121 5.3e-48 196.8 676 30.2
ClCG04G011810 Citrullus lanatus HOM05D003672 ORTHO05D004121 5.8e-47 193.4 539 33.6
Haze_11907 Corylus avellana HOM05D003672 ORTHO05D004121 7.6e-47 193.0 511 34.6
BcaB08g37298 Brassica carinata HOM05D003672 ORTHO05D004121 1.7e-46 191.8 390 37.4
AT5G08010 Arabidopsis thaliana HOM05D003672 ORTHO05D004121 2.2e-46 191.4 705 28.9
HPP92_007830 Vanilla planifolia HOM05D003672 ORTHO05D004121 2.2e-46 191.4 633 31.3
BraA10t44910Z Brassica rapa HOM05D003672 ORTHO05D004121 4.9e-46 190.3 532 32.0
Aa31LG3G18520 Aethionema arabicum HOM05D003672 ORTHO05D004121 3.2e-45 187.6 539 31.9
Sc12g0007260 Simmondsia chinensis HOM05D003672 ORTHO05D004121 9.3e-45 186.0 465 36.3
CsaV3_1G005970 Cucumis sativus L. HOM05D003672 ORTHO05D004121 3.5e-44 184.1 540 33.0
CARHR205170 Cardamine hirsuta HOM05D003672 ORTHO05D004121 7.9e-44 183.0 722 29.4
ATR0177G058 Amborella trichopoda HOM05D003672 ORTHO05D004121 3.9e-43 180.6 489 32.5
MELO3C002028.2 Cucumis melo HOM05D003672 ORTHO05D004121 3.9e-43 180.6 565 31.3
MBI16_g36263_MAGBIO Magnolia biondii HOM05D003672 ORTHO05D004121 3.9e-43 180.6 541 32.0
Os12g0576300 Oryza sativa ssp. japonica HOM05D003672 ORTHO05D004121 5.1e-43 180.3 521 30.7
CAN.G1228.26 Capsicum annuum HOM05D003672 ORTHO05D004121 1.5e-42 178.7 452 35.6
Zm00001eb029540 Zea mays HOM05D003672 ORTHO05D004121 2.5e-42 177.9 523 31.9
A10p28610 Brassica napus HOM05D003672 ORTHO05D004121 3.3e-42 177.6 542 31.5
C09p68900 Brassica napus HOM05D003672 ORTHO05D004121 5.7e-42 176.8 696 27.9
Zm00001eb136280 Zea mays HOM05D003672 ORTHO05D004121 3.7e-41 174.1 391 33.8
BolC9t59636H Brassica oleracea HOM05D003672 ORTHO05D004121 8.2e-41 172.9 696 27.6
Sp6g34930 Schrenkiella parvula HOM05D003672 ORTHO05D004121 3.4e-39 167.5 550 30.9
CiPaw.05G125000 Carya illinoinensis HOM05D003672 ORTHO05D004121 7.1e-37 159.8 538 32.9
Eucgr.B03149 Eucalyptus grandis HOM05D003672 ORTHO05D004121 7.1e-37 159.8 622 29.7
QL03p074186 Quercus lobata HOM05D003672 ORTHO05D004121 3.0e-35 154.5 513 32.2
Aa31LG11G2260 Aethionema arabicum HOM05D003672 ORTHO05D004121 5.1e-35 153.7 682 27.4
PGR102G2240 Punica granatum HOM05D003672 ORTHO05D004121 1.1e-34 152.5 553 31.8
CANSAT39G0004 Cannabis sativa HOM05D003672 ORTHO05D004121 2.2e-33 148.3 218 45.0
Potri.008G096100 Populus trichocarpa HOM05D003672 ORTHO05D004121 8.2e-33 146.4 388 35.3
vmacro01315 Vaccinium macrocarpon HOM05D003672 ORTHO05D004121 4.1e-32 144.1 715 28.7
Atru.chr11.1624 Acer truncatum HOM05D003672 ORTHO05D004121 1.5e-31 142.1 221 44.3
Sabra08G0072400 Salix brachista HOM05D003672 ORTHO05D004121 2.6e-31 141.4 259 41.7
SEGI_35614 Sequoiadendron giganteum HOM05D003672 ORTHO05D004121 2.6e-31 141.4 659 27.0
Oeu004585.2 Olea europaea HOM05D003672 ORTHO05D004121 4.5e-31 140.6 544 30.5
BcaB08g37300 Brassica carinata HOM05D003672 ORTHO05D004121 8.5e-30 136.3 247 41.7
Peaxi162Scf00175g00022 Petunia axillaris HOM05D003672 ORTHO05D004121 5.5e-29 133.7 359 34.3
Cc11_g11950 Coffea canephora HOM05D003672 ORTHO05D004121 3.6e-28 131.0 602 28.2
unitig_749.g13432 Utricularia gibba HOM05D003672 ORTHO05D004121 3.0e-27 127.9 368 33.4
SEGI_10408 Sequoiadendron giganteum HOM05D003672 ORTHO05D004121 1.1e-24 119.4 542 26.4
SalBow2G2767 Salvia bowleyana HOM05D003672 ORTHO05D004121 9.1e-24 116.3 397 30.5
Solyc05g012230.4 Solanum lycopersicum HOM05D003672 ORTHO05D004121 2.0e-23 115.2 384 30.5
Nitab4.5_0000231g0260 Nicotiana tabacum HOM05D003672 ORTHO05D004121 4.5e-23 114.0 323 34.1
HPP92_000460 Vanilla planifolia HOM05D003672 ORTHO05D004121 4.5e-23 114.0 400 31.0
Sopen05g007060 Solanum pennellii HOM05D003672 ORTHO05D004121 2.2e-22 111.7 277 35.7
CDE07G1307 Ceratophyllum demersum HOM05D003672 ORTHO05D004121 2.9e-22 111.3 512 28.7
PGSC0003DMG400028369 Solanum tuberosum HOM05D003672 ORTHO05D004121 3.8e-22 110.9 283 36.4
CDE04G0191 Ceratophyllum demersum HOM05D003672 ORTHO05D004121 1.4e-21 109.0 385 30.6
Nitab4.5_0009585g0010 Nicotiana tabacum HOM05D003672 ORTHO05D004121 4.7e-20 104.0 261 36.4
Manes.01G028000 Manihot esculenta HOM05D003672 ORTHO05D004121 1.4e-19 102.4 366 31.4
Lsat_1_v5_gn_8_46340 Lactuca sativa HOM05D003672 ORTHO05D004121 9.7e-18 96.3 304 30.9
Ciclev10033781m.g Citrus clementina HOM05D003672 ORTHO05D004121 1.4e-16 92.4 260 33.1
ECA233G1662 Erigeron canadensis HOM05D000677 ORTHO05D000727 4.5e-15 87.4 311 31.8
Migut.L01189 Erythranthe guttata HOM05D003672 ORTHO05D004121 3.8e-14 84.3 436 27.1
HanXRQChr12g0363081 Helianthus annuus HOM05D003672 ORTHO05D004121 1.0e-11 76.3 230 33.0
Actinidia19914 Actinidia chinensis HOM05D000020 ORTHO05D000156 2.8e-09 68.2 108 42.6
MSTRG.7745 Avicennia marina HOM05D003672 ORTHO05D004121 1.4e-08 65.9 79 50.6
MD00G1005400 Malus domestica HOM05D003672 ORTHO05D004121 2.9e-06 58.2 110 35.5


User provided reference genes

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