Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.04G154600 Glycine max HOM05D006482 ORTHO05D008149 6.2e-29 130.2 69 100.0
Glyma.04G230700 Glycine max HOM05D006482 ORTHO05D008149 3.1e-28 127.9 69 97.1
Phvul.009G047100 Phaseolus vulgaris HOM05D006482 ORTHO05D008149 1.2e-24 115.9 69 87.0
Lj1g0026941 Lotus japonicus HOM05D006482 ORTHO05D008149 2.1e-21 105.1 69 79.7
Glyma.06G134500 Glycine max HOM05D006482 ORTHO05D008149 2.8e-21 104.8 67 83.6
Psat5g073480 Pisum sativum HOM05D006482 ORTHO05D008149 2.4e-20 101.7 69 78.3
Lalb_Chr11g0067291 Lupinus albus HOM05D006482 ORTHO05D008149 1.5e-19 99.0 68 73.5
Atru.chr12.2369 Acer truncatum HOM05D006482 ORTHO05D008149 3.4e-19 97.8 69 73.9
Duzib205G0332 Durio zibethinus HOM05D006482 ORTHO05D008149 5.8e-19 97.1 69 73.9
arahy.Tifrunner.gnm1.ann1.ZIU4UI Arachis hypogaea HOM05D006482 ORTHO05D008149 1.3e-18 95.9 69 68.1
COL.COLO4_14353 Corchorus olitorius HOM05D006482 ORTHO05D008149 1.7e-18 95.5 68 73.5
Lalb_Chr23g0271851 Lupinus albus HOM05D006482 ORTHO05D008149 1.7e-18 95.5 68 75.0
Thecc.03G206900 Theobroma cacao HOM05D006482 ORTHO05D008149 2.2e-18 95.1 69 71.0
TPR.G14847 Trifolium pratense HOM05D006482 ORTHO05D008149 3.8e-18 94.4 61 78.7
arahy.Tifrunner.gnm1.ann1.CVH3M3 Arachis hypogaea HOM05D006482 ORTHO05D008149 4.9e-18 94.0 69 66.7
Gohir.A08G103900 Gossypium hirsutum HOM05D006482 ORTHO05D008149 4.9e-18 94.0 69 72.5
GSVIVG01038627001 Vitis vinifera HOM05D006482 ORTHO05D008149 4.9e-18 94.0 69 71.0
QL05p036199 Quercus lobata HOM05D006482 ORTHO05D008149 6.4e-18 93.6 68 72.1
Medtr3g092270 Medicago truncatula HOM05D006482 ORTHO05D008149 8.4e-18 93.2 62 75.8
Gohir.D08G115300 Gossypium hirsutum HOM05D006482 ORTHO05D008149 1.4e-17 92.4 69 71.0
Gorai.004G124200 Gossypium raimondii HOM05D006482 ORTHO05D008149 1.4e-17 92.4 69 71.0
Ciclev10023193m.g Citrus clementina HOM05D006482 ORTHO05D008149 3.2e-17 91.3 69 69.6
Prupe.2G317400 Prunus persica HOM05D006482 ORTHO05D008149 3.2e-17 91.3 69 69.6
CSS0017170 Camellia sinensis var. sinensis HOM05D006482 ORTHO05D008149 1.6e-16 89.0 69 65.2
Nitab4.5_0008141g0050 Nicotiana tabacum HOM05D006482 ORTHO05D008149 1.6e-16 89.0 68 63.2
Oeu010737.1 Olea europaea HOM05D006482 ORTHO05D008149 1.6e-16 89.0 69 62.3
PGR142G0199 Punica granatum HOM05D006482 ORTHO05D008149 1.6e-16 89.0 69 66.7
ECA233G2670 Erigeron canadensis HOM05D006482 ORTHO05D008149 3.5e-16 87.8 69 66.7
Gorai.008G265700 Gossypium raimondii HOM05D006482 ORTHO05D008149 3.5e-16 87.8 69 68.1
TWI14G0741 Tripterygium wilfordii HOM05D006482 ORTHO05D008149 3.5e-16 87.8 64 68.8
TAR374G1512 Trochodendron aralioides HOM05D006482 ORTHO05D008149 4.6e-16 87.4 69 65.2
CANSAT21G0227 Cannabis sativa HOM05D006482 ORTHO05D008149 6.0e-16 87.0 69 63.8
Manes.01G041500 Manihot esculenta HOM05D006482 ORTHO05D008149 6.0e-16 87.0 69 65.2
Actinidia27284 Actinidia chinensis HOM05D000567 ORTHO05D000767 7.8e-16 86.7 69 65.2
Lsat_1_v5_gn_6_10060 Lactuca sativa HOM05D006482 ORTHO05D008149 7.8e-16 86.7 69 66.7
CiPaw.05G203100 Carya illinoinensis HOM05D006482 ORTHO05D008149 1.0e-15 86.3 69 65.2
TAR629G1047 Trochodendron aralioides HOM05D006482 ORTHO05D008149 1.0e-15 86.3 69 63.8
EL10Ac3g05199 Beta vulgaris HOM05D006482 ORTHO05D008149 1.3e-15 85.9 69 68.1
MD01G1227400 Malus domestica HOM05D006482 ORTHO05D008149 1.3e-15 85.9 69 65.2
Nitab4.5_0002720g0020 Nicotiana tabacum HOM05D006482 ORTHO05D008149 1.3e-15 85.9 67 62.7
Rhsim03G0214200 Rhododendron simsii HOM05D006482 ORTHO05D008149 1.3e-15 85.9 69 60.9
Dinv18742 Davidia involucrata HOM05D006482 ORTHO05D008149 1.7e-15 85.5 64 64.1
Nn3g18841 Nelumbo nucifera HOM05D006482 ORTHO05D008149 1.7e-15 85.5 69 63.8
RcHm_v2.0_Chr1g0382671 Rosa chinensis HOM05D006482 ORTHO05D008149 1.7e-15 85.5 69 63.8
PGSC0003DMG400012236 Solanum tuberosum HOM05D006482 ORTHO05D008149 1.7e-15 85.5 69 62.3
Aa31LG3G9780 Aethionema arabicum HOM05D006482 ORTHO05D008149 2.3e-15 85.1 69 63.8
FvH4_7g32700 Fragaria vesca HOM05D006482 ORTHO05D008149 3.0e-15 84.7 69 62.3
FAN01G3112 Fragaria x ananassa HOM05D006482 ORTHO05D008149 3.0e-15 84.7 69 62.3
FAN03G2872 Fragaria x ananassa HOM05D006482 ORTHO05D008149 3.0e-15 84.7 69 62.3
Potri.015G006500 Populus trichocarpa HOM05D006482 ORTHO05D008149 3.0e-15 84.7 69 62.3
Ah.13g070630 Amaranthus hybridus HOM05D006482 ORTHO05D008149 3.9e-15 84.3 70 67.1
Dinv29224 Davidia involucrata HOM05D006482 ORTHO05D008149 5.1e-15 84.0 62 64.5
Hma1.2p1_0456F.1_g156710 Hydrangea macrophylla HOM05D006482 ORTHO05D008149 5.1e-15 84.0 69 65.2
Duzib068G1219 Durio zibethinus HOM05D006482 ORTHO05D008149 6.6e-15 83.6 84 58.3
Gohir.A12G246900 Gossypium hirsutum HOM05D006482 ORTHO05D008149 6.6e-15 83.6 69 63.8
TWI39G0373 Tripterygium wilfordii HOM05D006482 ORTHO05D008149 6.6e-15 83.6 69 62.3
Eucgr.K00422 Eucalyptus grandis HOM05D006482 ORTHO05D008149 8.7e-15 83.2 69 63.8
Migut.E00300 Erythranthe guttata HOM05D006482 ORTHO05D008149 1.1e-14 82.8 70 65.7
HanXRQChr07g0192381 Helianthus annuus HOM05D006482 ORTHO05D008149 1.1e-14 82.8 69 62.3
Potri.012G022900 Populus trichocarpa HOM05D006482 ORTHO05D008149 1.1e-14 82.8 69 60.9
Sed0025475 Sechium edule HOM05D006482 ORTHO05D008149 1.5e-14 82.4 69 60.9
Solyc08g083200.3 Solanum lycopersicum HOM05D006482 ORTHO05D008149 1.5e-14 82.4 69 59.4
Sopen08g031390 Solanum pennellii HOM05D006482 ORTHO05D008149 1.5e-14 82.4 69 59.4
AL8G28600 Arabidopsis lyrata HOM05D006482 ORTHO05D008149 1.9e-14 82.0 69 62.3
CDE09G1364 Ceratophyllum demersum HOM05D001294 ORTHO05D001178 1.9e-14 82.0 67 62.7
Sabra15G0004500 Salix brachista HOM05D006482 ORTHO05D008149 3.3e-14 81.3 69 59.4
vmacro06428 Vaccinium macrocarpon HOM05D006482 ORTHO05D008149 3.3e-14 81.3 69 59.4
PSO063G1999 Papaver somniferum HOM05D006482 ORTHO05D008149 4.3e-14 80.9 69 58.0
Carub.0008s1398 Capsella rubella HOM05D006482 ORTHO05D008149 5.6e-14 80.5 69 60.9
AT5G53650 Arabidopsis thaliana HOM05D006482 ORTHO05D008149 9.6e-14 79.7 68 61.8
CSS0001288 Camellia sinensis var. sinensis HOM05D006482 ORTHO05D008149 9.6e-14 79.7 69 62.3
Thhalv10015198m.g Eutrema salsugineum HOM05D006482 ORTHO05D008149 1.3e-13 79.3 69 59.4
Hund09702 Selenicereus undatus HOM05D006482 ORTHO05D008149 1.6e-13 79.0 68 61.8
Sp6g15770 Schrenkiella parvula HOM05D006482 ORTHO05D008149 2.1e-13 78.6 69 59.4
ClCG01G000130 Citrullus lanatus HOM05D006482 ORTHO05D008149 2.8e-13 78.2 69 58.0
Hund21041 Selenicereus undatus HOM05D006482 ORTHO05D008149 2.8e-13 78.2 73 61.6
BcaB01g04252 Brassica carinata HOM05D006482 ORTHO05D008149 3.6e-13 77.8 67 59.7
A03p15030 Brassica napus HOM05D006482 ORTHO05D008149 3.6e-13 77.8 67 59.7
BraA03t10797Z Brassica rapa HOM05D006482 ORTHO05D008149 3.6e-13 77.8 67 59.7
Peaxi162Scf00074g00224 Petunia axillaris HOM05D006482 ORTHO05D008149 3.6e-13 77.8 69 60.9
SalBow3G2365 Salvia bowleyana HOM05D006482 ORTHO05D008149 4.8e-13 77.4 70 61.4
Sc13g0010170 Simmondsia chinensis HOM05D006482 ORTHO05D008149 4.8e-13 77.4 69 56.5
CARHR266810 Cardamine hirsuta HOM05D006482 ORTHO05D008149 8.1e-13 76.6 69 58.0
C03p17520 Brassica napus HOM05D006482 ORTHO05D008149 1.1e-12 76.3 67 58.2
BolC3t14165H Brassica oleracea HOM05D006482 ORTHO05D008149 1.1e-12 76.3 67 58.2
CSS0049934 Camellia sinensis var. sinensis HOM05D006482 ORTHO05D008149 1.1e-12 76.3 69 60.9
BcaC01g06263 Brassica carinata HOM05D006482 ORTHO05D008149 1.8e-12 75.5 67 58.2
CsaV3_5G000030 Cucumis sativus L. HOM05D006482 ORTHO05D008149 1.8e-12 75.5 69 56.5
MELO3C005924.2 Cucumis melo HOM05D006482 ORTHO05D008149 2.4e-12 75.1 69 56.5
unitig_699.g19497 Utricularia gibba HOM05D006482 ORTHO05D008149 3.1e-12 74.7 66 57.6
Sc19g0000660 Simmondsia chinensis HOM05D006482 ORTHO05D008149 4.0e-12 74.3 68 61.8
CiPaw.06G042200 Carya illinoinensis HOM05D006482 ORTHO05D008149 6.9e-12 73.6 69 55.1
MD07G1297700 Malus domestica HOM05D006482 ORTHO05D008149 9.0e-12 73.2 95 48.4
A02p10930 Brassica napus HOM05D006482 ORTHO05D008149 1.2e-11 72.8 67 55.2
THA.LOC109117152 Tarenaya hassleriana HOM05D006482 ORTHO05D008149 2.0e-11 72.0 65 56.9
BcaB05g22064 Brassica carinata HOM05D006482 ORTHO05D008149 4.5e-11 70.9 67 55.2
BraA02t06158Z Brassica rapa HOM05D006482 ORTHO05D008149 4.5e-11 70.9 67 53.7
AUR62035606 Chenopodium quinoa HOM05D006482 ORTHO05D008149 7.6e-11 70.1 92 50.0
Gohir.D12G247600 Gossypium hirsutum HOM05D006482 ORTHO05D008149 1.3e-10 69.3 69 60.9
SEGI_31465 Sequoiadendron giganteum HOM05D006482 ORTHO05D008149 1.7e-10 68.9 62 59.7
BcaC03g14399 Brassica carinata HOM05D006482 ORTHO05D008149 2.9e-10 68.2 67 50.7
C02p18140 Brassica napus HOM05D006482 ORTHO05D008149 2.9e-10 68.2 67 50.7
BolC2t07944H Brassica oleracea HOM05D006482 ORTHO05D008149 2.9e-10 68.2 67 50.7
Cc08_g16820 Coffea canephora HOM05D006482 ORTHO05D008149 2.9e-10 68.2 66 51.5
Sed0001965 Sechium edule HOM05D006482 ORTHO05D008149 6.4e-10 67.0 65 52.3
Eucgr.E02459 Eucalyptus grandis HOM05D006482 ORTHO05D008149 8.4e-10 66.6 55 61.8
Duzib084G1447 Durio zibethinus HOM05D006482 ORTHO05D008149 1.6e-08 62.4 57 57.9
QL09p007382 Quercus lobata HOM05D006482 ORTHO05D008149 1.6e-08 62.4 138 35.5
CSS0007382 Camellia sinensis var. sinensis HOM05D006482 ORTHO05D008149 7.9e-08 60.1 62 53.2
Sabra12G0010900 Salix brachista HOM05D006482 ORTHO05D008149 1.8e-07 58.9 128 34.4
CSS0015195 Camellia sinensis var. sinensis HOM05D006482 ORTHO05D008149 3.0e-07 58.2 69 47.8
CDE11G0870 Ceratophyllum demersum HOM05D006482 ORTHO05D008149 3.0e-07 58.2 101 39.6
CSS0018303 Camellia sinensis var. sinensis HOM05D006482 ORTHO05D008149 3.9e-07 57.8 52 53.8
Haze_00279 Corylus avellana HOM05D006482 ORTHO05D008149 3.9e-07 57.8 37 70.3
HPP92_020659 Vanilla planifolia HOM05D001695 ORTHO05D002735 6.7e-07 57.0 74 48.6
FAN17G0467 Fragaria x ananassa HOM05D006482 ORTHO05D008149 8.7e-07 56.6 37 70.3
Os05g0535700 Oryza sativa ssp. japonica HOM05D006482 ORTHO05D008149 1.5e-06 55.8 71 46.5
ATR0579G147 Amborella trichopoda HOM05D006482 ORTHO05D008149 5.6e-06 53.9 39 61.5


User provided reference genes

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