Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.04G147800 Glycine max HOM05D003537 ORTHO05D004180 3.4e-60 235.0 130 100.0
arahy.Tifrunner.gnm1.ann1.P86YY0 Arachis hypogaea HOM05D003537 ORTHO05D004180 1.8e-45 186.0 134 76.9
arahy.Tifrunner.gnm1.ann1.F0XIJD Arachis hypogaea HOM05D003537 ORTHO05D004180 4.0e-45 184.9 134 76.1
Glyma.17G114800 Glycine max HOM05D003537 ORTHO05D004180 1.6e-41 172.9 134 66.4
Glyma.06G222000 Glycine max HOM05D003537 ORTHO05D004180 3.5e-41 171.8 134 79.9
Ca_21681_v3 Cicer arietinum L. HOM05D003537 ORTHO05D004180 9.5e-39 163.7 133 64.7
Lalb_Chr07g0178961 Lupinus albus HOM05D003537 ORTHO05D004180 1.2e-38 163.3 133 75.2
Medtr4g114180 Medicago truncatula HOM05D003537 ORTHO05D004180 3.6e-38 161.8 134 64.2
Glyma.13G167200 Glycine max HOM05D003537 ORTHO05D004180 2.3e-37 159.1 132 62.9
Lj4g0026965 Lotus japonicus HOM05D003537 ORTHO05D004180 8.9e-37 157.1 133 62.4
QL10p023445 Quercus lobata HOM05D003537 ORTHO05D004180 4.4e-36 154.8 131 58.8
Psat4g040120 Pisum sativum HOM05D003537 ORTHO05D004180 3.7e-35 151.8 134 61.9
Phvul.003G164500 Phaseolus vulgaris HOM05D003537 ORTHO05D004180 4.9e-35 151.4 133 69.9
arahy.Tifrunner.gnm1.ann1.4IXQ36 Arachis hypogaea HOM05D003537 ORTHO05D004180 6.4e-35 151.0 106 79.2
arahy.Tifrunner.gnm1.ann1.EPB35R Arachis hypogaea HOM05D003537 ORTHO05D004180 6.4e-35 151.0 106 79.2
Gohir.A13G199600 Gossypium hirsutum HOM05D003537 ORTHO05D004180 1.9e-34 149.4 132 58.3
Actinidia40471 Actinidia chinensis HOM05D003537 ORTHO05D004180 3.2e-34 148.7 132 59.1
Atru.chr7.1160 Acer truncatum HOM05D003537 ORTHO05D004180 9.2e-34 147.1 132 65.9
CiPaw.04G171200 Carya illinoinensis HOM05D003537 ORTHO05D004180 1.6e-33 146.4 137 55.5
Duzib150G0412 Durio zibethinus HOM05D003537 ORTHO05D004180 2.1e-33 146.0 132 57.6
Manes.14G132200 Manihot esculenta HOM05D003537 ORTHO05D004180 2.1e-33 146.0 127 70.1
Cpa.g.sc75.27 Carica papaya HOM05D003537 ORTHO05D004180 2.7e-33 145.6 132 57.6
Gohir.D13G205100 Gossypium hirsutum HOM05D003537 ORTHO05D004180 6.0e-33 144.4 132 56.1
Gorai.013G234000 Gossypium raimondii HOM05D003537 ORTHO05D004180 6.0e-33 144.4 132 56.1
PGR142G2689 Punica granatum HOM05D003537 ORTHO05D004180 7.8e-33 144.1 132 56.1
Actinidia21987 Actinidia chinensis HOM05D003537 ORTHO05D004180 1.3e-32 143.3 133 58.6
Gohir.D06G054550 Gossypium hirsutum HOM05D003537 ORTHO05D004180 2.3e-32 142.5 132 58.3
Gohir.A06G055900 Gossypium hirsutum HOM05D003537 ORTHO05D004180 3.0e-32 142.1 132 57.6
Nn2g12030 Nelumbo nucifera HOM05D003537 ORTHO05D004180 8.6e-32 140.6 133 63.9
Cfa003377 Carpinus fangiana HOM05D003537 ORTHO05D004180 1.1e-31 140.2 132 67.4
VMungo1215G2386 Vigna mungo HOM05D003537 ORTHO05D004180 1.1e-31 140.2 133 65.4
TWI34G1168 Tripterygium wilfordii HOM05D003537 ORTHO05D004180 2.5e-31 139.0 132 63.6
ClCG11G003050 Citrullus lanatus HOM05D003537 ORTHO05D004180 5.6e-31 137.9 139 65.5
Haze_25576 Corylus avellana HOM05D003537 ORTHO05D004180 7.3e-31 137.5 132 56.1
CsaV3_2G002870 Cucumis sativus L. HOM05D003537 ORTHO05D004180 7.3e-31 137.5 138 57.2
TPR.G10724 Trifolium pratense HOM05D003537 ORTHO05D004180 9.5e-31 137.1 144 52.1
Eucgr.C01175 Eucalyptus grandis HOM05D003537 ORTHO05D004180 3.6e-30 135.2 120 55.0
Manes.06G058601 Manihot esculenta HOM05D003537 ORTHO05D004180 3.6e-30 135.2 130 53.1
Peaxi162Scf00157g01525 Petunia axillaris HOM05D003537 ORTHO05D004180 3.6e-30 135.2 131 60.3
Prupe.7G243100 Prunus persica HOM05D003537 ORTHO05D004180 4.7e-30 134.8 132 65.2
Sed0005083 Sechium edule HOM05D003537 ORTHO05D004180 4.7e-30 134.8 139 61.9
Gorai.010G063900 Gossypium raimondii HOM05D003537 ORTHO05D004180 1.4e-29 133.3 132 55.3
RcHm_v2.0_Chr2g0088401 Rosa chinensis HOM05D003537 ORTHO05D004180 1.4e-29 133.3 129 63.6
MSTRG.21979 Avicennia marina HOM05D003537 ORTHO05D004180 5.2e-29 131.3 130 53.1
Cc06_g08500 Coffea canephora HOM05D003537 ORTHO05D004180 5.2e-29 131.3 133 54.1
Ciclev10009876m.g Citrus clementina HOM05D003537 ORTHO05D004180 1.5e-28 129.8 131 55.0
FAN28G2448 Fragaria x ananassa HOM05D003537 ORTHO05D004180 3.4e-28 128.6 129 65.9
Nitab4.5_0002658g0060 Nicotiana tabacum HOM05D003537 ORTHO05D004180 5.8e-28 127.9 133 51.1
TWI63G0509 Tripterygium wilfordii HOM05D003537 ORTHO05D004180 5.8e-28 127.9 132 54.5
FAN23G0028 Fragaria x ananassa HOM05D003537 ORTHO05D004180 9.9e-28 127.1 127 54.3
Solyc12g009440.2 Solanum lycopersicum HOM05D003537 ORTHO05D004180 9.9e-28 127.1 133 62.4
FvH4_1g03260 Fragaria vesca HOM05D003537 ORTHO05D004180 1.7e-27 126.3 129 64.3
FAN19G1671 Fragaria x ananassa HOM05D003537 ORTHO05D004180 1.7e-27 126.3 129 64.3
Nitab4.5_0010481g0030 Nicotiana tabacum HOM05D003537 ORTHO05D004180 1.7e-27 126.3 133 54.1
Sopen12g004440 Solanum pennellii HOM05D003537 ORTHO05D004180 1.7e-27 126.3 133 61.7
Hma1.2p1_0018F.1_g012400 Hydrangea macrophylla HOM05D003537 ORTHO05D004180 2.9e-27 125.6 144 47.9
THA.LOC104808988 Tarenaya hassleriana HOM05D003537 ORTHO05D004180 2.9e-27 125.6 133 57.9
SGA_v2.0_scaffold12G06124 Striga asiatica HOM05D003537 ORTHO05D004180 3.7e-27 125.2 142 50.7
Nn8g39452 Nelumbo nucifera HOM05D003537 ORTHO05D004180 4.9e-27 124.8 132 58.3
HPP92_000667 Vanilla planifolia HOM05D003537 ORTHO05D004180 6.4e-27 124.4 82 87.8
Lalb_Chr13g0301861 Lupinus albus HOM05D003537 ORTHO05D004180 8.3e-27 124.0 135 61.5
THA.LOC104815279 Tarenaya hassleriana HOM05D003537 ORTHO05D004180 8.3e-27 124.0 134 58.2
Oeu018469.1 Olea europaea HOM05D003537 ORTHO05D004180 1.4e-26 123.2 132 59.8
Rhsim01G0071100 Rhododendron simsii HOM05D003537 ORTHO05D004180 1.4e-26 123.2 133 61.7
Dinv41510 Davidia involucrata HOM05D003537 ORTHO05D004180 1.9e-26 122.9 132 60.6
ECA240G1743 Erigeron canadensis HOM05D003537 ORTHO05D004180 1.9e-26 122.9 135 57.8
MD15G1173100 Malus domestica HOM05D003537 ORTHO05D004180 1.9e-26 122.9 130 61.5
Thecc.09G126600 Theobroma cacao HOM05D003537 ORTHO05D004180 2.4e-26 122.5 132 51.5
MD02G1031600 Malus domestica HOM05D003537 ORTHO05D004180 4.1e-26 121.7 132 50.8
GSVIVG01015532001 Vitis vinifera HOM05D003537 ORTHO05D004180 7.1e-26 120.9 133 53.4
TAR625G0117 Trochodendron aralioides HOM05D003537 ORTHO05D004180 9.2e-26 120.6 132 55.3
Migut.K00479 Erythranthe guttata HOM05D003537 ORTHO05D004180 2.1e-25 119.4 132 48.5
CANSAT11G2285 Cannabis sativa HOM05D003537 ORTHO05D004180 2.7e-25 119.0 136 50.7
Potri.018G068300 Populus trichocarpa HOM05D003537 ORTHO05D004180 2.7e-25 119.0 134 50.0
PGSC0003DMG400002918 Solanum tuberosum HOM05D005825 ORTHO05D006483 4.6e-25 118.2 109 67.0
QL02p021910 Quercus lobata HOM05D003537 ORTHO05D004180 1.0e-24 117.1 131 51.1
A01p25800 Brassica napus HOM05D003537 ORTHO05D004180 1.3e-24 116.7 98 70.4
BraA01t02496Z Brassica rapa HOM05D003537 ORTHO05D004180 1.3e-24 116.7 98 70.4
RhsimUnG0194700 Rhododendron simsii HOM05D003537 ORTHO05D004180 1.9e-23 112.8 112 66.1
A06p27250 Brassica napus HOM05D003537 ORTHO05D004180 2.5e-23 112.5 92 72.8
TAR636G0369 Trochodendron aralioides HOM05D003537 ORTHO05D004180 4.3e-23 111.7 132 48.5
Lsat_1_v5_gn_7_45281 Lactuca sativa HOM05D003537 ORTHO05D004180 5.6e-23 111.3 134 52.2
Sp5g14270 Schrenkiella parvula HOM05D003537 ORTHO05D004180 5.6e-23 111.3 98 68.4
AL5G26940 Arabidopsis lyrata HOM05D003537 ORTHO05D004180 1.6e-22 109.8 138 46.4
vmacro20557 Vaccinium macrocarpon HOM05D003537 ORTHO05D004180 2.1e-22 109.4 133 56.4
EL10Ac8g18657 Beta vulgaris HOM05D003537 ORTHO05D004180 4.7e-22 108.2 133 45.9
AUR62011130 Chenopodium quinoa HOM05D003537 ORTHO05D004180 6.2e-22 107.8 137 59.9
AUR62013357 Chenopodium quinoa HOM05D003537 ORTHO05D004180 8.1e-22 107.5 137 57.7
AT3G47650 Arabidopsis thaliana HOM05D003537 ORTHO05D004180 1.1e-21 107.1 138 55.8
Lsat_1_v5_gn_8_58621 Lactuca sativa HOM05D003537 ORTHO05D004180 1.8e-21 106.3 94 55.3
Duzib168G0240 Durio zibethinus HOM05D003537 ORTHO05D004180 2.4e-21 105.9 111 52.3
Oeu007500.1 Olea europaea HOM05D003537 ORTHO05D004180 2.4e-21 105.9 132 56.8
Gohir.A06G143050 Gossypium hirsutum HOM05D003537 ORTHO05D004180 3.1e-21 105.5 86 60.5
Potri.018G028500 Populus trichocarpa HOM05D003537 ORTHO05D004180 3.1e-21 105.5 82 74.4
CDE06G2093 Ceratophyllum demersum HOM05D003537 ORTHO05D004180 6.8e-21 104.4 129 58.1
BcaB01g00893 Brassica carinata HOM05D003537 ORTHO05D004180 8.9e-21 104.0 106 48.1
unitig_26.g9662 Utricularia gibba HOM05D003537 ORTHO05D004180 8.9e-21 104.0 82 61.0
A06p19950 Brassica napus HOM05D003537 ORTHO05D004180 1.2e-20 103.6 89 68.5
BolC1t03207H Brassica oleracea HOM05D003537 ORTHO05D004180 1.2e-20 103.6 98 66.3
BraA06t25078Z Brassica rapa HOM05D003537 ORTHO05D004180 1.2e-20 103.6 89 68.5
Eucgr.C02783 Eucalyptus grandis HOM05D003537 ORTHO05D004180 1.2e-20 103.6 81 64.2
Sabra18G0030700 Salix brachista HOM05D003537 ORTHO05D004180 1.2e-20 103.6 82 72.0
MELO3C004506.2 Cucumis melo HOM05D003537 ORTHO05D004180 4.4e-20 101.7 151 44.4
BcaC01g01786 Brassica carinata HOM05D003537 ORTHO05D004180 7.6e-20 100.9 89 67.4
Migut.K00478 Erythranthe guttata HOM05D003537 ORTHO05D004180 7.6e-20 100.9 134 45.5
arahy.Tifrunner.gnm1.ann1.9FI3T7 Arachis hypogaea HOM05D003537 ORTHO05D004180 9.9e-20 100.5 131 42.7
arahy.Tifrunner.gnm1.ann1.DMU7Q7 Arachis hypogaea HOM05D003537 ORTHO05D004180 9.9e-20 100.5 131 42.7
CANSAT25G1571 Cannabis sativa HOM05D003537 ORTHO05D004180 9.9e-20 100.5 82 59.8
COL.COLO4_18845 Corchorus olitorius HOM05D003537 ORTHO05D004180 9.9e-20 100.5 118 45.8
BraA06t25666Z Brassica rapa HOM05D003537 ORTHO05D004180 2.2e-19 99.4 102 62.7
CDE04G0424 Ceratophyllum demersum HOM05D003537 ORTHO05D004180 2.2e-19 99.4 129 58.1
BcaC09g49812 Brassica carinata HOM05D003537 ORTHO05D004180 2.9e-19 99.0 98 64.3
C01p32690 Brassica napus HOM05D003537 ORTHO05D004180 2.9e-19 99.0 98 64.3
Thhalv10010812m.g Eutrema salsugineum HOM05D003537 ORTHO05D004180 3.8e-19 98.6 92 66.3
BcaB05g23065 Brassica carinata HOM05D003537 ORTHO05D004180 4.9e-19 98.2 98 64.3
SGA_v2.0_scaffold17G08031 Striga asiatica HOM05D003537 ORTHO05D004180 4.9e-19 98.2 130 45.4
CiPaw.08G011800 Carya illinoinensis HOM05D003537 ORTHO05D004180 6.4e-19 97.8 132 52.3
PSO455G0045 Papaver somniferum HOM05D003537 ORTHO05D004180 6.4e-19 97.8 135 42.2
HanXRQChr16g0505371 Helianthus annuus HOM05D003537 ORTHO05D004180 8.4e-19 97.4 87 52.9
BcaB02g10692 Brassica carinata HOM05D003537 ORTHO05D004180 7.1e-18 94.4 96 62.5
Haze_21529 Corylus avellana HOM05D003537 ORTHO05D004180 7.1e-18 94.4 132 40.9
ATR1120G202 Amborella trichopoda HOM05D003537 ORTHO05D004180 9.2e-18 94.0 83 56.6
BcaC01g02287 Brassica carinata HOM05D003537 ORTHO05D004180 9.2e-18 94.0 103 49.5
MBI01_g36269_MAGBIO Magnolia biondii HOM05D003537 ORTHO05D004180 9.2e-18 94.0 137 54.0
ECA246G5170 Erigeron canadensis HOM05D003537 ORTHO05D004180 1.2e-17 93.6 77 53.2
PSO170G5454 Papaver somniferum HOM05D003537 ORTHO05D004180 1.2e-17 93.6 138 42.0
Aa31LG8G16720 Aethionema arabicum HOM05D003537 ORTHO05D004180 2.1e-17 92.8 108 47.2
Ah.14g079820 Amaranthus hybridus HOM05D003537 ORTHO05D004180 2.1e-17 92.8 136 39.7
Mapoly0035s0118 Marchantia polymorpha HOM05D002896 ORTHO05D003263 2.1e-17 92.8 77 63.6
MD15G1124500 Malus domestica HOM05D003537 ORTHO05D004180 4.6e-17 91.7 104 47.1
Peaxi162Scf00256g00035 Petunia axillaris HOM05D003537 ORTHO05D004180 4.6e-17 91.7 107 44.9
Aqoxy7G02181 Aquilegia oxysepala HOM05D003537 ORTHO05D004180 7.8e-17 90.9 134 51.5
Hund09242 Selenicereus undatus HOM05D003537 ORTHO05D004180 1.0e-16 90.5 75 70.7
RcHm_v2.0_Chr6g0298061 Rosa chinensis HOM05D003537 ORTHO05D004180 1.3e-16 90.1 130 52.3
CARHR156330 Cardamine hirsuta HOM05D003537 ORTHO05D004180 1.7e-16 89.7 139 49.6
Dinv18245 Davidia involucrata HOM05D003537 ORTHO05D004180 1.7e-16 89.7 81 64.2
Gorai.010G114400 Gossypium raimondii HOM05D003537 ORTHO05D004180 1.7e-16 89.7 104 49.0
Manes.16G121200 Manihot esculenta HOM05D003537 ORTHO05D004180 1.7e-16 89.7 81 69.1
Ciclev10009875m.g Citrus clementina HOM05D003537 ORTHO05D004180 2.3e-16 89.4 132 50.0
Gohir.A06G098204 Gossypium hirsutum HOM05D003537 ORTHO05D004180 2.3e-16 89.4 94 50.0
vmacro23102 Vaccinium macrocarpon HOM05D003537 ORTHO05D004180 2.3e-16 89.4 83 68.7
SMO145G0190 Selaginella moellendorffii HOM05D003537 ORTHO05D004180 3.9e-16 88.6 70 55.7
GSVIVG01035845001 Vitis vinifera HOM05D003537 ORTHO05D004180 3.9e-16 88.6 93 65.6
Dinv15950 Davidia involucrata HOM05D003537 ORTHO05D004180 6.6e-16 87.8 80 63.8
Prupe.1G480000 Prunus persica HOM05D003537 ORTHO05D004180 1.5e-15 86.7 130 50.0
SalBow1G5494 Salvia bowleyana HOM05D003537 ORTHO05D004180 1.5e-15 86.7 105 45.7
CsaV3_3G046470 Cucumis sativus L. HOM05D003537 ORTHO05D004180 1.9e-15 86.3 131 42.0
Lalb_Chr08g0244061 Lupinus albus HOM05D003537 ORTHO05D004180 1.9e-15 86.3 81 65.4
GSVIVG01015534001 Vitis vinifera HOM05D003537 ORTHO05D004180 1.9e-15 86.3 59 67.8
Pp3c18_21980 Physcomitrium patens HOM05D003537 ORTHO05D004180 2.5e-15 85.9 93 46.2
Thecc.09G026400 Theobroma cacao HOM05D003537 ORTHO05D004180 2.5e-15 85.9 94 62.8
FAN15G0527 Fragaria x ananassa HOM05D003537 ORTHO05D004180 3.3e-15 85.5 128 49.2
FAN27G1347 Fragaria x ananassa HOM05D003537 ORTHO05D004180 3.3e-15 85.5 128 49.2
HanXRQChr09g0242821 Helianthus annuus HOM05D003537 ORTHO05D004180 3.3e-15 85.5 135 52.6
Atru.BG.3.p Acer truncatum HOM05D003537 ORTHO05D004180 4.3e-15 85.1 68 55.9
VMungo1309G0037 Vigna mungo HOM05D003537 ORTHO05D004180 4.3e-15 85.1 81 50.6
CSS0014531 Camellia sinensis var. sinensis HOM05D003537 ORTHO05D004180 5.6e-15 84.7 79 49.4
FvH4_2g29200 Fragaria vesca HOM05D003537 ORTHO05D004180 7.3e-15 84.3 131 50.4
Glyma.06G069100 Glycine max HOM05D003537 ORTHO05D004180 7.3e-15 84.3 107 57.0
PGR044G0105 Punica granatum HOM05D003537 ORTHO05D004180 7.3e-15 84.3 81 67.9
Lj1g0012711 Lotus japonicus HOM05D003537 ORTHO05D004180 1.3e-14 83.6 87 49.4
Carub.0005s1378 Capsella rubella HOM05D003537 ORTHO05D004180 1.6e-14 83.2 137 49.6
Cpa.g.sc259.5 Carica papaya HOM05D003537 ORTHO05D004180 1.6e-14 83.2 136 48.5
Glyma.04G067500 Glycine max HOM05D003537 ORTHO05D004180 1.6e-14 83.2 89 61.8
ClCG05G016980 Citrullus lanatus HOM05D003537 ORTHO05D004180 2.1e-14 82.8 132 45.5
Os06g0332800 Oryza sativa ssp. japonica HOM05D003537 ORTHO05D004180 2.8e-14 82.4 94 64.9
C03p71880 Brassica napus HOM05D003537 ORTHO05D004180 3.6e-14 82.0 89 60.7
Medtr3g107397 Medicago truncatula HOM05D003537 ORTHO05D004180 4.8e-14 81.6 141 40.4
Sed0007274 Sechium edule HOM05D003537 ORTHO05D004180 4.8e-14 81.6 121 40.5
TPR.G3106 Trifolium pratense HOM05D003537 ORTHO05D004180 6.2e-14 81.3 124 43.5
Psat0s2233g0360 Pisum sativum HOM05D003537 ORTHO05D004180 8.1e-14 80.9 87 47.1
FAN26G0344 Fragaria x ananassa HOM05D003537 ORTHO05D004180 4.0e-13 78.6 54 66.7
Cc08_g00790 Coffea canephora HOM05D003537 ORTHO05D004180 9.9e-12 73.9 120 36.7
SEGI_36836 Sequoiadendron giganteum HOM05D003537 ORTHO05D004180 2.2e-11 72.8 108 40.7
Gohir.D08G087900 Gossypium hirsutum HOM05D003537 ORTHO05D004180 3.8e-11 72.0 59 61.0
Lsat_1_v5_gn_5_30800 Lactuca sativa HOM05D003537 ORTHO05D004180 1.1e-10 70.5 57 54.4
DCAR_003091 Daucus carota HOM05D003537 ORTHO05D004180 3.2e-10 68.9 81 43.2
FAN24G0346 Fragaria x ananassa HOM05D003537 ORTHO05D004180 4.2e-10 68.6 102 40.2
Gohir.A10G061300 Gossypium hirsutum HOM05D003537 ORTHO05D004180 1.2e-09 67.0 31 90.3
Gohir.D06G099500 Gossypium hirsutum HOM05D003537 ORTHO05D004180 1.2e-09 67.0 74 47.3
CSS0006865 Camellia sinensis var. sinensis HOM05D003537 ORTHO05D004180 2.1e-09 66.2 31 87.1
CSS0026750 Camellia sinensis var. sinensis HOM05D003537 ORTHO05D004180 2.1e-09 66.2 31 87.1
Gohir.A10G065840 Gossypium hirsutum HOM05D003537 ORTHO05D004180 1.9e-07 59.7 48 64.6
C03p67010 Brassica napus HOM05D003537 ORTHO05D004180 2.1e-06 56.2 102 36.3
BolC3t18976H Brassica oleracea HOM05D003537 ORTHO05D004180 2.1e-06 56.2 102 36.3
MELO3C030460.2 Cucumis melo HOM05D003537 ORTHO05D004180 2.8e-06 55.8 48 52.1


User provided reference genes

Program Settings