Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.04G146100 Glycine max HOM05D001101 ORTHO05D000893 4.1e-47 191.0 97 100.0
Glyma.02G033400 Glycine max HOM05D001101 ORTHO05D000893 1.1e-18 96.7 55 90.9
Glyma.01G032000 Glycine max HOM05D001101 ORTHO05D000893 1.5e-17 92.8 55 85.5
Ca_04608_v3 Cicer arietinum L. HOM05D001101 ORTHO05D000893 2.6e-17 92.0 76 68.4
VMungo1215G1219 Vigna mungo HOM05D001101 ORTHO05D000893 5.8e-17 90.9 55 83.6
Lj2g0009470 Lotus japonicus HOM05D001101 ORTHO05D000893 3.8e-16 88.2 55 83.6
Ca_22748_v3 Cicer arietinum L. HOM05D001101 ORTHO05D000893 8.4e-16 87.0 55 81.8
Phvul.002G072500 Phaseolus vulgaris HOM05D001101 ORTHO05D000893 5.5e-15 84.3 55 80.0
Medtr5g034750 Medicago truncatula HOM05D001101 ORTHO05D000893 9.3e-15 83.6 79 63.3
TPR.G29174 Trifolium pratense HOM05D001101 ORTHO05D000893 1.2e-14 83.2 79 63.3
arahy.Tifrunner.gnm1.ann1.94JZA8 Arachis hypogaea HOM05D001101 ORTHO05D000893 4.6e-14 81.3 55 76.4
arahy.Tifrunner.gnm1.ann1.GMM3UD Arachis hypogaea HOM05D001101 ORTHO05D000893 6.0e-14 80.9 55 74.5
Lalb_Chr05g0217011 Lupinus albus HOM05D001101 ORTHO05D000893 7.9e-14 80.5 55 76.4
Psat2g105520 Pisum sativum HOM05D001101 ORTHO05D000893 1.0e-13 80.1 79 63.3
Glyma.18G135800 Glycine max HOM05D001101 ORTHO05D000893 2.3e-13 79.0 57 75.4
Lalb_Chr16g0382351 Lupinus albus HOM05D001101 ORTHO05D000893 2.3e-13 79.0 55 76.4
Prupe.1G256300 Prunus persica HOM05D001101 ORTHO05D000893 2.3e-13 79.0 55 72.7
Cfa009111 Carpinus fangiana HOM05D001101 ORTHO05D000893 3.9e-13 78.2 55 74.5
Haze_12149 Corylus avellana HOM05D001101 ORTHO05D000893 2.5e-12 75.5 55 72.7
Lj4g0015491 Lotus japonicus HOM05D001101 ORTHO05D000893 2.5e-12 75.5 57 75.4
VMungo0251G1292 Vigna mungo HOM05D001101 ORTHO05D000893 3.3e-12 75.1 57 71.9
Lalb_Chr09g0326421 Lupinus albus HOM05D001101 ORTHO05D000893 4.3e-12 74.7 55 72.7
Glyma.08G288800 Glycine max HOM05D001101 ORTHO05D000893 9.7e-12 73.6 84 56.0
CiPaw.06G073800 Carya illinoinensis HOM05D001101 ORTHO05D000893 2.2e-11 72.4 55 69.1
Medtr8g063760 Medicago truncatula HOM05D001101 ORTHO05D000893 2.2e-11 72.4 57 73.7
TPR.G21867 Trifolium pratense HOM05D001101 ORTHO05D000893 2.8e-11 72.0 57 71.9
Psat4g125040 Pisum sativum HOM05D001101 ORTHO05D000893 3.7e-11 71.6 57 73.7
Phvul.003G053100 Phaseolus vulgaris HOM05D001101 ORTHO05D000893 4.8e-11 71.2 56 71.4
MD13G1089500 Malus domestica HOM05D001101 ORTHO05D000893 6.3e-11 70.9 55 67.3
Lalb_Chr09g0335061 Lupinus albus HOM05D001101 ORTHO05D000893 1.1e-10 70.1 57 73.7
Ciclev10031448m.g Citrus clementina HOM05D001101 ORTHO05D000893 1.4e-10 69.7 55 65.5
MD16G1089700 Malus domestica HOM05D001101 ORTHO05D000893 1.4e-10 69.7 54 66.7
FvH4_4g34810 Fragaria vesca HOM05D001101 ORTHO05D000893 1.8e-10 69.3 55 67.3
FAN07G0661 Fragaria x ananassa HOM05D000380 ORTHO05D000561 1.8e-10 69.3 55 67.3
FAN12G2904 Fragaria x ananassa HOM05D001101 ORTHO05D000893 1.8e-10 69.3 55 67.3
FAN22G1364 Fragaria x ananassa HOM05D001101 ORTHO05D000893 1.8e-10 69.3 55 67.3
Lj6C803T14 Lonicera japonica HOM05D001101 ORTHO05D000893 1.8e-10 69.3 56 66.1
CiPaw.05G147400 Carya illinoinensis HOM05D001101 ORTHO05D000893 2.4e-10 68.9 55 69.1
QL03p061860 Quercus lobata HOM05D001101 ORTHO05D000893 2.4e-10 68.9 55 63.6
Dinv24882 Davidia involucrata HOM05D001101 ORTHO05D000893 6.9e-10 67.4 56 66.1
Thecc.02G246000 Theobroma cacao HOM05D001101 ORTHO05D000893 6.9e-10 67.4 56 66.1
RcHm_v2.0_Chr4g0444151 Rosa chinensis HOM05D001101 ORTHO05D000893 9.0e-10 67.0 55 63.6
CANSAT01G0962 Cannabis sativa HOM05D001101 ORTHO05D000893 1.5e-09 66.2 55 63.6
COL.COLO4_19521 Corchorus olitorius HOM05D001101 ORTHO05D000893 2.0e-09 65.9 56 64.3
EL10Ac6g13649 Beta vulgaris HOM05D001101 ORTHO05D000893 3.4e-09 65.1 55 65.5
Atru.chr11.1998 Acer truncatum HOM05D001101 ORTHO05D000893 4.5e-09 64.7 55 60.0
Gohir.A05G318200 Gossypium hirsutum HOM05D001101 ORTHO05D000893 4.5e-09 64.7 56 62.5
Gorai.009G343600 Gossypium raimondii HOM05D001101 ORTHO05D000893 4.5e-09 64.7 56 62.5
Manes.01G198700 Manihot esculenta HOM05D001101 ORTHO05D000893 5.9e-09 64.3 55 61.8
AUR62014004 Chenopodium quinoa HOM05D001101 ORTHO05D000893 7.6e-09 63.9 55 61.8
Gohir.D05G320500 Gossypium hirsutum HOM05D001101 ORTHO05D000893 7.6e-09 63.9 56 62.5
MSTRG.7883 Avicennia marina HOM05D001101 ORTHO05D000893 1.0e-08 63.5 56 60.7
AUR62005351 Chenopodium quinoa HOM05D001101 ORTHO05D000893 1.0e-08 63.5 55 61.8
Cpa.g.sc69.6 Carica papaya HOM05D001101 ORTHO05D000893 1.3e-08 63.2 55 60.0
Dinv31019 Davidia involucrata HOM05D001101 ORTHO05D000893 1.3e-08 63.2 56 58.9
Dinv31083 Davidia involucrata HOM05D001101 ORTHO05D000893 1.3e-08 63.2 56 58.9
Duzib248G0364 Durio zibethinus HOM05D001101 ORTHO05D000893 1.3e-08 63.2 54 64.8
Duzib268G0494 Durio zibethinus HOM05D001101 ORTHO05D000893 1.3e-08 63.2 56 62.5
Actinidia15030 Actinidia chinensis HOM05D001101 ORTHO05D000893 2.2e-08 62.4 56 62.5
vmacro16266 Vaccinium macrocarpon HOM05D001101 ORTHO05D000893 2.2e-08 62.4 56 62.5
CSS0026381 Camellia sinensis var. sinensis HOM05D001101 ORTHO05D000893 2.9e-08 62.0 87 47.1
Duzib251G0525 Durio zibethinus HOM05D001101 ORTHO05D000893 2.9e-08 62.0 55 61.8
Oeu027460.1 Olea europaea HOM05D001101 ORTHO05D000893 2.9e-08 62.0 57 61.4
Hma1.2p1_0867F.1_g230370 Hydrangea macrophylla HOM05D001101 ORTHO05D000893 3.8e-08 61.6 56 58.9
MBI14_g17549_MAGBIO Magnolia biondii HOM05D001101 ORTHO05D000893 3.8e-08 61.6 57 64.9
TAR629G0388 Trochodendron aralioides HOM05D001101 ORTHO05D000893 3.8e-08 61.6 57 61.4
GSVIVG01020207001 Vitis vinifera HOM05D001101 ORTHO05D000893 3.8e-08 61.6 55 61.8
Hma1.2p1_0697F.1_g204810 Hydrangea macrophylla HOM05D001101 ORTHO05D000893 5.0e-08 61.2 57 61.4
Rhsim12G0122000 Rhododendron simsii HOM05D001101 ORTHO05D000893 5.0e-08 61.2 56 60.7
Actinidia36074 Actinidia chinensis HOM05D001101 ORTHO05D000893 6.5e-08 60.8 56 57.1
MSTRG.24001 Avicennia marina HOM05D001101 ORTHO05D000893 6.5e-08 60.8 69 52.2
CSS0035328 Camellia sinensis var. sinensis HOM05D001101 ORTHO05D000893 6.5e-08 60.8 88 51.1
CSS0045296 Camellia sinensis var. sinensis HOM05D001101 ORTHO05D000893 6.5e-08 60.8 88 51.1
Actinidia32588 Actinidia chinensis HOM05D001101 ORTHO05D000893 8.5e-08 60.5 56 60.7
Cc11_g14460 Coffea canephora HOM05D001101 ORTHO05D000893 8.5e-08 60.5 56 58.9
TAR371G0907 Trochodendron aralioides HOM05D001101 ORTHO05D000893 8.5e-08 60.5 87 49.4
Dinv33507 Davidia involucrata HOM05D001101 ORTHO05D000893 1.1e-07 60.1 56 57.1
PSO017G3792 Papaver somniferum HOM05D001101 ORTHO05D000893 1.1e-07 60.1 56 60.7
PGSC0003DMG400000502 Solanum tuberosum HOM05D001101 ORTHO05D000893 1.1e-07 60.1 56 55.4
Actinidia06033 Actinidia chinensis HOM05D001101 ORTHO05D000893 1.4e-07 59.7 56 58.9
Dinv35044 Davidia involucrata HOM05D001101 ORTHO05D000893 1.4e-07 59.7 56 55.4
Ah.03g132590 Amaranthus hybridus HOM05D001101 ORTHO05D000893 1.9e-07 59.3 53 62.3
Manes.05G088000 Manihot esculenta HOM05D001101 ORTHO05D000893 2.5e-07 58.9 55 58.2
Sopen02g031780 Solanum pennellii HOM05D001101 ORTHO05D000893 2.5e-07 58.9 55 54.5
CSS0032434 Camellia sinensis var. sinensis HOM05D001101 ORTHO05D000893 3.2e-07 58.5 86 45.3
SalBow2G3253 Salvia bowleyana HOM05D001101 ORTHO05D000893 3.2e-07 58.5 56 60.7
Cc07_g02390 Coffea canephora HOM05D001101 ORTHO05D000893 4.2e-07 58.2 54 53.7
Gohir.D04G178100 Gossypium hirsutum HOM05D001101 ORTHO05D000893 4.2e-07 58.2 55 56.4
Potri.008G147700 Populus trichocarpa HOM05D001101 ORTHO05D000893 4.2e-07 58.2 56 58.9
PGR119G1830 Punica granatum HOM05D001101 ORTHO05D000893 4.2e-07 58.2 56 57.1
TAR622G1072 Trochodendron aralioides HOM05D000380 ORTHO05D000893 4.2e-07 58.2 57 61.4
Sabra10G0066400 Salix brachista HOM05D001101 ORTHO05D000893 5.5e-07 57.8 55 56.4
Solyc02g087010.2 Solanum lycopersicum HOM05D001101 ORTHO05D000893 5.5e-07 57.8 55 54.5
Potri.010G094200 Populus trichocarpa HOM05D001101 ORTHO05D000893 7.2e-07 57.4 55 56.4
Sabra08G0112300 Salix brachista HOM05D001101 ORTHO05D000893 7.2e-07 57.4 55 58.2
Lj7C589T17 Lonicera japonica HOM05D001101 ORTHO05D000893 9.3e-07 57.0 85 45.9
Nitab4.5_0007879g0050 Nicotiana tabacum HOM05D001101 ORTHO05D000893 9.3e-07 57.0 56 51.8
Rhsim10G0024200 Rhododendron simsii HOM05D001101 ORTHO05D000893 9.3e-07 57.0 56 57.1
CAN.G206.42 Capsicum annuum HOM05D001101 ORTHO05D000893 1.2e-06 56.6 56 51.8
HanXRQChr09g0265951 Helianthus annuus HOM05D001101 ORTHO05D000893 1.2e-06 56.6 54 53.7
Gorai.012G171100 Gossypium raimondii HOM05D001101 ORTHO05D000893 2.1e-06 55.8 64 50.0
Hund25336 Selenicereus undatus HOM05D001101 ORTHO05D000893 2.1e-06 55.8 55 56.4
Atru.chr6.2184 Acer truncatum HOM05D001101 ORTHO05D000893 2.7e-06 55.5 61 54.1
SGA_v2.0_scaffold165G38262 Striga asiatica HOM05D001101 ORTHO05D000893 2.7e-06 55.5 57 59.6
Gohir.A04G134900 Gossypium hirsutum HOM05D001101 ORTHO05D000893 3.6e-06 55.1 53 56.6
Nn4g22832 Nelumbo nucifera HOM05D001101 ORTHO05D000893 3.6e-06 55.1 87 47.1
Hund05975 Selenicereus undatus HOM05D001101 ORTHO05D000893 3.6e-06 55.1 55 58.2
TWI75G0662 Tripterygium wilfordii HOM05D001101 ORTHO05D000893 3.6e-06 55.1 55 54.5
DCAR_026546 Daucus carota HOM05D001101 ORTHO05D000893 4.6e-06 54.7 56 55.4
Haze_14655 Corylus avellana HOM05D001101 ORTHO05D000893 7.9e-06 53.9 56 57.1
Prupe.3G281800 Prunus persica HOM05D001101 ORTHO05D000893 7.9e-06 53.9 55 54.5


User provided reference genes

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