Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.04G142901 Glycine max HOM05D000351 ORTHO05D011522 2.8e-31 137.9 65 100.0
Glyma.01G151600 Glycine max HOM05D000351 ORTHO05D000250 3.3e-08 61.2 27 88.9
Glyma.09G216800 Glycine max HOM05D000351 ORTHO05D000250 7.4e-08 60.1 27 85.2
arahy.Tifrunner.gnm1.ann1.4ZN4QC Arachis hypogaea HOM05D000351 ORTHO05D000250 6.3e-07 57.0 27 77.8
arahy.Tifrunner.gnm1.ann1.RJK860 Arachis hypogaea HOM05D000351 ORTHO05D000250 6.3e-07 57.0 27 77.8
Lj2g0021749 Lotus japonicus HOM05D000351 ORTHO05D000250 6.3e-07 57.0 27 77.8
CDE11G0419 Ceratophyllum demersum HOM05D000351 ORTHO05D000250 8.2e-07 56.6 27 81.5
TAR636G1088 Trochodendron aralioides HOM05D000351 ORTHO05D000250 8.2e-07 56.6 27 81.5
Ca_25065_v3 Cicer arietinum L. HOM05D000351 ORTHO05D000250 1.1e-06 56.2 27 77.8
Lj4g0002695 Lotus japonicus HOM05D000351 ORTHO05D000250 1.1e-06 56.2 27 77.8
Hund14315 Selenicereus undatus HOM05D000351 ORTHO05D000250 1.1e-06 56.2 27 77.8
Lalb_Chr09g0325121 Lupinus albus HOM05D000351 ORTHO05D000250 1.4e-06 55.8 27 77.8
QL12p002469 Quercus lobata HOM05D000351 ORTHO05D000250 1.4e-06 55.8 27 77.8
Atru.chr6.2129 Acer truncatum HOM05D000351 ORTHO05D000250 1.8e-06 55.5 27 77.8
Aqoxy1G03326 Aquilegia oxysepala HOM05D000351 ORTHO05D000250 1.8e-06 55.5 27 77.8
Aqoxy6G02172 Aquilegia oxysepala HOM05D000351 ORTHO05D000250 1.8e-06 55.5 27 77.8
CSS0004814 Camellia sinensis var. sinensis HOM05D000351 ORTHO05D000250 1.8e-06 55.5 27 77.8
CSS0009401 Camellia sinensis var. sinensis HOM05D000351 ORTHO05D000250 1.8e-06 55.5 27 77.8
CSS0024733 Camellia sinensis var. sinensis HOM05D000351 ORTHO05D000250 1.8e-06 55.5 27 77.8
Ciclev10001371m.g Citrus clementina HOM05D000351 ORTHO05D000250 1.8e-06 55.5 27 77.8
FvH4_5g24500 Fragaria vesca HOM05D000351 ORTHO05D000250 1.8e-06 55.5 27 77.8
FAN04G1581 Fragaria x ananassa HOM05D000351 ORTHO05D000250 1.8e-06 55.5 27 77.8
FAN08G1042 Fragaria x ananassa HOM05D000351 ORTHO05D000250 1.8e-06 55.5 27 77.8
FAN18G0732 Fragaria x ananassa HOM05D000351 ORTHO05D000250 1.8e-06 55.5 27 77.8
Lj7C755G7 Lonicera japonica HOM05D000351 ORTHO05D000250 1.8e-06 55.5 27 77.8
PSO532G0004 Papaver somniferum HOM05D000351 ORTHO05D000250 1.8e-06 55.5 27 77.8
PSO541G1057 Papaver somniferum HOM05D000351 ORTHO05D000250 1.8e-06 55.5 27 77.8
PSO541G3562 Papaver somniferum HOM05D000351 ORTHO05D000250 1.8e-06 55.5 27 77.8
RcHm_v2.0_Chr7g0214971 Rosa chinensis HOM05D000351 ORTHO05D000250 1.8e-06 55.5 27 77.8
SalBow1G7809 Salvia bowleyana HOM05D000351 ORTHO05D000250 1.8e-06 55.5 27 77.8
SalBow8G4984 Salvia bowleyana HOM05D000351 ORTHO05D000250 1.8e-06 55.5 27 77.8
THA.LOC104811235 Tarenaya hassleriana HOM05D000351 ORTHO05D000250 1.8e-06 55.5 27 74.1
TWI12G0006 Tripterygium wilfordii HOM05D000351 ORTHO05D000250 1.8e-06 55.5 27 77.8
TWI32G1191 Tripterygium wilfordii HOM05D000351 ORTHO05D000250 1.8e-06 55.5 27 77.8
TWI60G0801 Tripterygium wilfordii HOM05D000351 ORTHO05D000250 1.8e-06 55.5 27 77.8
vmacro05168 Vaccinium macrocarpon HOM05D000351 ORTHO05D000250 1.8e-06 55.5 27 77.8
MELO3C016210.2 Cucumis melo HOM05D000351 ORTHO05D000250 2.4e-06 55.1 40 60.0
CsaV3_4G007050 Cucumis sativus L. HOM05D000351 ORTHO05D000250 2.4e-06 55.1 40 60.0
Duzib205G0942 Durio zibethinus HOM05D000351 ORTHO05D000250 2.4e-06 55.1 27 74.1
Lalb_Chr05g0215281 Lupinus albus HOM05D000351 ORTHO05D000250 2.4e-06 55.1 27 74.1
Phvul.002G123900 Phaseolus vulgaris HOM05D000351 ORTHO05D000250 2.4e-06 55.1 27 77.8
arahy.Tifrunner.gnm1.ann1.PA5TJQ Arachis hypogaea HOM05D001155 ORTHO05D018386 3.1e-06 54.7 44 52.3
CiPaw.11G077100 Carya illinoinensis HOM05D000351 ORTHO05D000250 3.1e-06 54.7 27 74.1
DCAR_018937 Daucus carota HOM05D000351 ORTHO05D000250 3.1e-06 54.7 27 77.8
MD08G1205300 Malus domestica HOM05D000351 ORTHO05D000250 3.1e-06 54.7 27 77.8
SHI43825 Sapria himalayana HOM05D000351 ORTHO05D000250 3.1e-06 54.7 34 67.6
Hund11079 Selenicereus undatus HOM05D000351 ORTHO05D000250 3.1e-06 54.7 27 70.4
Atru.chr6.2140 Acer truncatum HOM05D000351 ORTHO05D011522 4.1e-06 54.3 28 71.4
Dinv37448 Davidia involucrata HOM05D000351 ORTHO05D000250 4.1e-06 54.3 27 74.1
Lalb_Chr09g0334411 Lupinus albus HOM05D000351 ORTHO05D000250 4.1e-06 54.3 27 74.1
Nn1g09244 Nelumbo nucifera HOM05D000351 ORTHO05D000250 4.1e-06 54.3 27 77.8
Nn3g19174 Nelumbo nucifera HOM05D000351 ORTHO05D000250 4.1e-06 54.3 27 77.8
RcHm_v2.0_Chr7g0214981 Rosa chinensis HOM05D000351 ORTHO05D000250 4.1e-06 54.3 27 74.1
CDE02G2966 Ceratophyllum demersum HOM05D000351 ORTHO05D000250 5.3e-06 53.9 49 53.1
Ciclev10001426m.g Citrus clementina HOM05D000351 ORTHO05D000250 5.3e-06 53.9 24 83.3
Ciclev10001467m.g Citrus clementina HOM05D000351 ORTHO05D000250 5.3e-06 53.9 24 83.3
FvH4_5g24510 Fragaria vesca HOM05D000351 ORTHO05D000250 5.3e-06 53.9 27 74.1
FAN08G1064 Fragaria x ananassa HOM05D000351 ORTHO05D000250 5.3e-06 53.9 27 74.1
FAN13G0587 Fragaria x ananassa HOM05D000351 ORTHO05D000250 5.3e-06 53.9 27 74.1
FAN13G2575 Fragaria x ananassa HOM05D000351 ORTHO05D000250 5.3e-06 53.9 27 74.1
FAN18G2640 Fragaria x ananassa HOM05D000351 ORTHO05D000250 5.3e-06 53.9 27 74.1
Potri.003G046200 Populus trichocarpa HOM05D000351 ORTHO05D000250 5.3e-06 53.9 27 81.5
Prupe.5G015300 Prunus persica HOM05D000351 ORTHO05D000250 5.3e-06 53.9 27 77.8
SalBow4G1439 Salvia bowleyana HOM05D000351 ORTHO05D000250 5.3e-06 53.9 27 66.7
VMungo1215G1640 Vigna mungo HOM05D000351 ORTHO05D005872 5.3e-06 53.9 27 74.1
Aqoxy1G00046 Aquilegia oxysepala HOM05D000351 ORTHO05D000250 6.9e-06 53.5 27 74.1
Aqoxy1G02493 Aquilegia oxysepala HOM05D000351 ORTHO05D000250 6.9e-06 53.5 27 74.1
Aqoxy2G01439 Aquilegia oxysepala HOM05D000351 ORTHO05D000250 6.9e-06 53.5 27 74.1
CAN.G504.95 Capsicum annuum HOM05D000351 ORTHO05D000250 6.9e-06 53.5 27 66.7
Cpa.g.sc143.7 Carica papaya HOM05D000351 ORTHO05D000250 6.9e-06 53.5 27 77.8
Ciclev10030247m.g Citrus clementina HOM05D000351 ORTHO05D000250 6.9e-06 53.5 27 74.1
Manes.17G001600 Manihot esculenta HOM05D000351 ORTHO05D000250 6.9e-06 53.5 27 74.1
Nitab4.5_0000063g0340 Nicotiana tabacum HOM05D000351 ORTHO05D000250 6.9e-06 53.5 27 66.7
Nitab4.5_0002697g0070 Nicotiana tabacum HOM05D000351 ORTHO05D000250 6.9e-06 53.5 27 66.7
Os02g0702400 Oryza sativa ssp. japonica HOM05D000351 ORTHO05D000250 6.9e-06 53.5 40 57.5
Potri.004G234100 Populus trichocarpa HOM05D000351 ORTHO05D000250 6.9e-06 53.5 27 70.4
PGR042G3005 Punica granatum HOM05D000351 ORTHO05D000250 6.9e-06 53.5 27 74.1
QL12p002480 Quercus lobata HOM05D000351 ORTHO05D000250 6.9e-06 53.5 27 74.1
QL12p002512 Quercus lobata HOM05D000351 ORTHO05D000250 6.9e-06 53.5 27 74.1
QL12p002604 Quercus lobata HOM05D000351 ORTHO05D000250 6.9e-06 53.5 27 74.1
SalBow3G2321 Salvia bowleyana HOM05D000351 ORTHO05D000250 6.9e-06 53.5 27 74.1
Solyc08g005800.4 Solanum lycopersicum HOM05D000351 ORTHO05D000250 6.9e-06 53.5 27 66.7
Sopen08g001800 Solanum pennellii HOM05D000351 ORTHO05D000250 6.9e-06 53.5 27 66.7
PGSC0003DMG401024140 Solanum tuberosum HOM05D000351 ORTHO05D000250 6.9e-06 53.5 27 66.7
Actinidia14729 Actinidia chinensis HOM05D000351 ORTHO05D000250 9.0e-06 53.1 27 74.1
EL10Ac5g11868 Beta vulgaris HOM05D000351 ORTHO05D000250 9.0e-06 53.1 27 70.4
CSS0007218 Camellia sinensis var. sinensis HOM05D000351 ORTHO05D000250 9.0e-06 53.1 27 74.1
CSS0022983 Camellia sinensis var. sinensis HOM05D000351 ORTHO05D000250 9.0e-06 53.1 27 74.1
AUR62007445 Chenopodium quinoa HOM05D000351 ORTHO05D000250 9.0e-06 53.1 27 70.4
COL.COLO4_16728 Corchorus olitorius HOM05D000351 ORTHO05D000250 9.0e-06 53.1 27 70.4
DCAR_000709 Daucus carota HOM05D000351 ORTHO05D000250 9.0e-06 53.1 27 74.1
Dinv09423 Davidia involucrata HOM05D000351 ORTHO05D000250 9.0e-06 53.1 27 74.1
Eucgr.E01169 Eucalyptus grandis HOM05D000351 ORTHO05D000250 9.0e-06 53.1 27 74.1
Eucgr.E01170 Eucalyptus grandis HOM05D000351 ORTHO05D000250 9.0e-06 53.1 27 70.4
Glyma.16G107300 Glycine max HOM05D000351 ORTHO05D000250 9.0e-06 53.1 27 74.1
Lj7A188T15 Lonicera japonica HOM05D000351 ORTHO05D000250 9.0e-06 53.1 28 75.0
MBI04_g30785_MAGBIO Magnolia biondii HOM05D000351 ORTHO05D000250 9.0e-06 53.1 50 52.0
MD06G1012900 Malus domestica HOM05D000351 ORTHO05D000250 9.0e-06 53.1 27 74.1
PSO782G3788 Papaver somniferum HOM05D000351 ORTHO05D000250 9.0e-06 53.1 27 74.1
Rhsim07G0141400 Rhododendron simsii HOM05D000351 ORTHO05D000250 9.0e-06 53.1 27 74.1
SGA_v2.0_scaffold89G27355 Striga asiatica HOM05D000351 ORTHO05D000250 9.0e-06 53.1 27 70.4
TWI34G1995 Tripterygium wilfordii HOM05D000351 ORTHO05D000250 9.0e-06 53.1 27 74.1
VMungo0251G0758 Vigna mungo HOM05D000351 ORTHO05D000250 9.0e-06 53.1 27 74.1
GSVIVG01036914001 Vitis vinifera HOM05D000351 ORTHO05D000250 9.0e-06 53.1 27 74.1


User provided reference genes

Program Settings