Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.04G129700 Glycine max HOM05D011778 ORTHO05D012624 2.0e-189 666.0 448 100.0
Glyma.06G315700 Glycine max HOM05D011778 ORTHO05D012624 2.8e-122 443.0 462 69.3
Phvul.008G161400 Phaseolus vulgaris HOM05D011778 ORTHO05D012624 2.9e-79 300.1 471 60.1
VMungo0647G2372 Vigna mungo HOM05D011778 ORTHO05D012624 3.4e-67 260.0 436 48.4
Glyma.06G315202 Glycine max HOM05D011778 ORTHO05D012624 2.7e-48 197.2 148 78.4
Psat5g229640 Pisum sativum HOM05D011778 ORTHO05D012624 3.9e-47 193.4 462 46.5
Lj3g0018117 Lotus japonicus HOM05D011778 ORTHO05D012624 1.3e-42 178.3 457 43.8
Glyma.04G129900 Glycine max HOM05D011778 ORTHO05D012624 1.6e-40 171.4 148 59.5
Medtr3g007480 Medicago truncatula HOM05D011778 ORTHO05D012624 7.3e-38 162.5 486 43.2
Lalb_Chr18g0049101 Lupinus albus HOM05D011778 ORTHO05D012624 8.1e-37 159.1 437 34.8
Lalb_Chr15g0079601 Lupinus albus HOM05D011778 ORTHO05D012624 2.4e-33 147.5 444 33.6
Psat5g230000 Pisum sativum HOM05D011778 ORTHO05D012624 1.5e-30 138.3 112 59.8
TPR.G25508 Trifolium pratense HOM05D011778 ORTHO05D012624 1.3e-26 125.2 188 42.0
arahy.Tifrunner.gnm1.ann1.1W2EAK Arachis hypogaea HOM05D011778 ORTHO05D012624 1.4e-20 105.1 115 48.7
VMungo1127G1301 Vigna mungo HOM05D022505 ORTHO05D012624 4.0e-20 103.6 439 27.3
arahy.Tifrunner.gnm1.ann1.XJN7SY Arachis hypogaea HOM05D011778 ORTHO05D012624 2.6e-19 100.9 115 47.8
MD02G1259500 Malus domestica HOM05D000881 ORTHO05D000666 1.3e-15 88.6 109 41.3
TPR.G618 Trifolium pratense HOM05D011778 ORTHO05D012624 4.8e-13 80.1 153 39.9
Manes.10G070600 Manihot esculenta HOM05D000881 ORTHO05D000666 2.0e-11 74.7 116 36.2
RcHm_v2.0_Chr1g0331581 Rosa chinensis HOM05D000881 ORTHO05D000666 1.7e-10 71.6 444 25.5
CANSAT56G0189 Cannabis sativa HOM05D000881 ORTHO05D000666 2.2e-10 71.2 444 26.8
Prupe.2G065600 Prunus persica HOM05D000881 ORTHO05D000666 1.9e-09 68.2 450 23.6
Potri.008G014000 Populus trichocarpa HOM05D027296 ORTHO05D037401 2.4e-09 67.8 180 30.6
TPR.G144 Trifolium pratense HOM05D000881 ORTHO05D000666 9.3e-09 65.9 103 39.8
Glyma.14G045300 Glycine max HOM05D000881 ORTHO05D000666 1.6e-08 65.1 218 28.0
Phvul.005G011300 Phaseolus vulgaris HOM05D000881 ORTHO05D000666 1.6e-08 65.1 446 23.3
DCAR_011554 Daucus carota HOM05D000881 ORTHO05D000666 2.7e-08 64.3 109 33.9
Sabra10G0191800 Salix brachista HOM05D000881 ORTHO05D050753 2.7e-08 64.3 103 33.0
TWI38G1417 Tripterygium wilfordii HOM05D000881 ORTHO05D000666 2.7e-08 64.3 117 37.6
MD07G1061100 Malus domestica HOM05D000881 ORTHO05D000666 4.6e-08 63.5 88 36.4
A03p01910 Brassica napus HOM05D000881 ORTHO05D000666 6.0e-08 63.2 127 35.4
BraA03t09561Z Brassica rapa HOM05D000881 ORTHO05D000666 6.0e-08 63.2 127 35.4
Duzib052G0145 Durio zibethinus HOM05D000881 ORTHO05D000666 6.0e-08 63.2 188 30.9
Glyma.08G229900 Glycine max HOM05D022505 ORTHO05D012624 6.0e-08 63.2 156 35.3
Potri.008G013800 Populus trichocarpa HOM05D000881 ORTHO05D000666 6.0e-08 63.2 118 35.6
Phvul.003G276200 Phaseolus vulgaris HOM05D000881 ORTHO05D000666 7.9e-08 62.8 113 31.9
Ciclev10016030m.g Citrus clementina HOM05D000881 ORTHO05D000666 1.0e-07 62.4 121 34.7
Sed0019713 Sechium edule HOM05D000881 ORTHO05D000666 1.0e-07 62.4 103 35.9
Thhalv10014066m.g Eutrema salsugineum HOM05D000881 ORTHO05D000666 1.3e-07 62.0 88 34.1
BcaB01g05921 Brassica carinata HOM05D000881 ORTHO05D000666 1.8e-07 61.6 127 34.6
C03p02280 Brassica napus HOM05D000881 ORTHO05D000666 1.8e-07 61.6 127 34.6
Potri.010G245500 Populus trichocarpa HOM05D000881 ORTHO05D000666 2.3e-07 61.2 172 25.6
BolC9t59936H Brassica oleracea HOM05D000881 ORTHO05D000666 3.0e-07 60.8 140 29.3
Lj3g0025354 Lotus japonicus HOM05D000881 ORTHO05D000666 3.0e-07 60.8 125 33.6
BcaB05g21742 Brassica carinata HOM05D000881 ORTHO05D000666 3.9e-07 60.5 130 30.8
BcaNung05155 Brassica carinata HOM05D000881 ORTHO05D000666 3.9e-07 60.5 127 33.9
Nn4g23057 Nelumbo nucifera HOM05D000881 ORTHO05D000666 3.9e-07 60.5 104 35.6
Phvul.011G184400 Phaseolus vulgaris HOM05D022505 ORTHO05D012624 3.9e-07 60.5 147 40.1
PGSC0003DMG400027498 Solanum tuberosum HOM05D000881 ORTHO05D000666 3.9e-07 60.5 123 34.1
Actinidia17465 Actinidia chinensis HOM05D038880 ORTHO05D000666 6.7e-07 59.7 167 32.3
Aa31LG11G5820 Aethionema arabicum HOM05D000881 ORTHO05D000666 8.7e-07 59.3 116 31.9
MBI11_g45239_MAGBIO Magnolia biondii HOM05D000881 ORTHO05D000666 8.7e-07 59.3 199 26.1
A10p31250 Brassica napus HOM05D000881 ORTHO05D000666 1.1e-06 58.9 138 28.3
Sp6g37930 Schrenkiella parvula HOM05D000881 ORTHO05D000666 1.1e-06 58.9 120 30.0
AT5G04890 Arabidopsis thaliana HOM05D000881 ORTHO05D000666 1.5e-06 58.5 105 34.3
Cc00_g20150 Coffea canephora HOM05D000881 ORTHO05D000666 1.5e-06 58.5 124 33.9
Aqoxy3G03278 Aquilegia oxysepala HOM05D000881 ORTHO05D000666 1.9e-06 58.2 114 33.3
Carub.0006s0381 Capsella rubella HOM05D000881 ORTHO05D000666 1.9e-06 58.2 99 30.3
HanXRQChr17g0559031 Helianthus annuus HOM05D000881 ORTHO05D000666 1.9e-06 58.2 95 33.7
Phvul.001G133500 Phaseolus vulgaris HOM05D022505 ORTHO05D012624 1.9e-06 58.2 160 31.2
Sc06g0002830 Simmondsia chinensis HOM05D000881 ORTHO05D000666 1.9e-06 58.2 118 36.4
Eucgr.G02656 Eucalyptus grandis HOM05D000881 ORTHO05D000666 2.5e-06 57.8 195 26.7
VMungo0647G1281 Vigna mungo HOM05D000881 ORTHO05D000666 2.5e-06 57.8 121 29.8
Actinidia24915 Actinidia chinensis HOM05D000881 ORTHO05D000666 3.3e-06 57.4 186 27.4
BolC2t06177H Brassica oleracea HOM05D010059 ORTHO05D000666 3.3e-06 57.4 110 35.5
Phvul.008G209800 Phaseolus vulgaris HOM05D000881 ORTHO05D000666 3.3e-06 57.4 136 30.1
Psat4g142360 Pisum sativum HOM05D000881 ORTHO05D000666 3.3e-06 57.4 117 29.1
arahy.Tifrunner.gnm1.ann1.ZVX95B Arachis hypogaea HOM05D000881 ORTHO05D000666 4.3e-06 57.0 128 31.2
Migut.N01922 Erythranthe guttata HOM05D000881 ORTHO05D000666 4.3e-06 57.0 125 32.8
PGR142G0911 Punica granatum HOM05D000881 ORTHO05D000666 4.3e-06 57.0 150 30.0
AL6G14570 Arabidopsis lyrata HOM05D000881 ORTHO05D000666 5.6e-06 56.6 117 32.5
arahy.Tifrunner.gnm1.ann1.GLLM5N Arachis hypogaea HOM05D000881 ORTHO05D000666 5.6e-06 56.6 175 27.4
BcaC06g32196 Brassica carinata HOM05D000881 ORTHO05D000666 5.6e-06 56.6 127 31.5
C09p71870 Brassica napus HOM05D000881 ORTHO05D000666 5.6e-06 56.6 127 31.5
CDE05G3520 Ceratophyllum demersum HOM05D000881 ORTHO05D000666 5.6e-06 56.6 122 26.2
Glyma.04G130100 Glycine max HOM05D000881 ORTHO05D000666 5.6e-06 56.6 443 27.5
Glyma.15G216700 Glycine max HOM05D000881 ORTHO05D000666 5.6e-06 56.6 183 30.1
Rhsim01G0121400 Rhododendron simsii HOM05D000881 ORTHO05D000666 5.6e-06 56.6 91 37.4
Manes.07G083200 Manihot esculenta HOM05D000881 ORTHO05D000666 7.4e-06 56.2 178 25.3
Medtr3g007660 Medicago truncatula HOM05D000881 ORTHO05D000666 7.4e-06 56.2 457 23.9
Psat5g229840 Pisum sativum HOM05D000881 ORTHO05D000666 7.4e-06 56.2 441 23.4
QL04p049792 Quercus lobata HOM05D000881 ORTHO05D000666 7.4e-06 56.2 429 32.9
SGA_v2.0_scaffold196G40977 Striga asiatica HOM05D000881 ORTHO05D000666 7.4e-06 56.2 178 27.5
BcaB04g21185 Brassica carinata HOM05D010059 ORTHO05D011752 9.6e-06 55.8 93 29.0
FAN06G2536 Fragaria x ananassa HOM05D000881 ORTHO05D000666 9.6e-06 55.8 453 23.2
THA.LOC104816480 Tarenaya hassleriana HOM05D000881 ORTHO05D000666 9.6e-06 55.8 133 30.1


User provided reference genes

Program Settings