Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.04G128500 Glycine max HOM05D008143 ORTHO05D010256 3.1e-45 184.9 102 100.0
Glyma.06G310300 Glycine max HOM05D008143 ORTHO05D010256 3.7e-38 161.4 102 87.3
Medtr7g034335 Medicago truncatula HOM05D008143 ORTHO05D010256 1.1e-21 106.7 99 63.6
Ca_26206_v3 Cicer arietinum L. HOM05D008143 ORTHO05D010256 7.8e-20 100.5 99 62.6
Lj1g0022952 Lotus japonicus HOM05D008143 ORTHO05D010256 1.0e-19 100.1 102 61.8
Psat3g161880 Pisum sativum HOM05D008143 ORTHO05D010256 5.0e-19 97.8 76 73.7
CiPaw.14G012000 Carya illinoinensis HOM05D008143 ORTHO05D010256 7.3e-18 94.0 76 68.4
arahy.Tifrunner.gnm1.ann1.H93UBA Arachis hypogaea HOM05D008143 ORTHO05D010256 3.6e-17 91.7 76 68.4
Dinv43993 Davidia involucrata HOM05D008143 ORTHO05D010256 6.1e-17 90.9 86 62.8
Atru.chr5.8 Acer truncatum HOM05D008143 ORTHO05D010256 1.4e-16 89.7 70 72.9
Dinv43549 Davidia involucrata HOM05D000307 ORTHO05D010256 2.3e-16 89.0 96 55.2
Dinv43557 Davidia involucrata HOM05D008143 ORTHO05D010256 2.3e-16 89.0 96 55.2
QL04p024258 Quercus lobata HOM05D008143 ORTHO05D010256 2.3e-16 89.0 102 52.0
TWI59G0267 Tripterygium wilfordii HOM05D008143 ORTHO05D010256 4.0e-16 88.2 90 54.4
Cpa.g.sc41.41 Carica papaya HOM05D008143 ORTHO05D010256 4.4e-15 84.7 99 49.5
Oeu020235.1 Olea europaea HOM05D008143 ORTHO05D010256 7.5e-15 84.0 91 57.1
PGR042G2567 Punica granatum HOM05D008143 ORTHO05D010256 2.2e-14 82.4 72 61.1
arahy.Tifrunner.gnm1.ann1.3N3IDJ Arachis hypogaea HOM05D008143 ORTHO05D010256 2.9e-14 82.0 76 63.2
Sed0007849 Sechium edule HOM05D000473 ORTHO05D009707 4.9e-14 81.3 90 52.2
Ciclev10023977m.g Citrus clementina HOM05D008143 ORTHO05D010256 1.1e-13 80.1 76 59.2
GSVIVG01026763001 Vitis vinifera HOM05D008143 ORTHO05D010256 1.4e-13 79.7 73 64.4
Prupe.2G109300 Prunus persica HOM05D008143 ORTHO05D010256 1.8e-13 79.3 105 51.4
Sabra14G0137200 Salix brachista HOM05D008143 ORTHO05D010256 1.8e-13 79.3 84 54.8
Actinidia21604 Actinidia chinensis HOM05D008143 ORTHO05D010256 3.2e-13 78.6 107 49.5
Hma1.2p1_0076F.1_g039560 Hydrangea macrophylla HOM05D008143 ORTHO05D010256 3.2e-13 78.6 121 47.1
CAN.G700.4 Capsicum annuum HOM05D008143 ORTHO05D010256 4.1e-13 78.2 94 53.2
Migut.N01814 Erythranthe guttata HOM05D008143 ORTHO05D010256 4.1e-13 78.2 59 72.9
RcHm_v2.0_Chr1g0341271 Rosa chinensis HOM05D008143 ORTHO05D010256 5.4e-13 77.8 85 60.0
MD00G1098100 Malus domestica HOM05D008143 ORTHO05D010256 7.0e-13 77.4 85 58.8
Phvul.005G016300 Phaseolus vulgaris HOM05D008143 ORTHO05D010256 7.0e-13 77.4 97 50.5
Sabra14G0139000 Salix brachista HOM05D008143 ORTHO05D010256 7.0e-13 77.4 84 53.6
PGSC0003DMG400001819 Solanum tuberosum HOM05D008143 ORTHO05D010256 9.2e-13 77.0 94 51.1
Thecc.10G157800 Theobroma cacao HOM05D008143 ORTHO05D010256 1.2e-12 76.6 76 57.9
CiPaw.13G019200 Carya illinoinensis HOM05D008143 ORTHO05D010256 1.6e-12 76.3 76 59.2
ClCG05G002660 Citrullus lanatus HOM05D008143 ORTHO05D010256 3.5e-12 75.1 101 48.5
Duzib128G1063 Durio zibethinus HOM05D008143 ORTHO05D010256 4.6e-12 74.7 76 56.6
FvH4_7g08030 Fragaria vesca HOM05D008143 ORTHO05D010256 4.6e-12 74.7 63 68.3
FAN01G0067 Fragaria x ananassa HOM05D008143 ORTHO05D010256 4.6e-12 74.7 63 68.3
FAN10G1551 Fragaria x ananassa HOM05D008143 ORTHO05D010256 4.6e-12 74.7 63 68.3
Solyc01g080950.3 Solanum lycopersicum HOM05D008143 ORTHO05D010256 6.0e-12 74.3 94 50.0
HanXRQChr01g0020571 Helianthus annuus HOM05D008143 ORTHO05D010256 7.8e-12 73.9 74 55.4
Sopen01g032540 Solanum pennellii HOM05D008143 ORTHO05D010256 1.0e-11 73.6 94 50.0
MELO3C006232.2 Cucumis melo HOM05D008143 ORTHO05D010256 1.3e-11 73.2 76 57.9
Migut.N01697 Erythranthe guttata HOM05D008143 ORTHO05D010256 1.7e-11 72.8 70 60.0
Lalb_Chr19g0126471 Lupinus albus HOM05D008143 ORTHO05D010256 1.7e-11 72.8 97 54.6
SHI04152 Sapria himalayana HOM05D008143 ORTHO05D010256 2.3e-11 72.4 69 62.3
FAN03G3180 Fragaria x ananassa HOM05D008143 ORTHO05D010256 3.9e-11 71.6 63 65.1
CsaV3_3G010110 Cucumis sativus L. HOM05D008143 ORTHO05D010256 5.0e-11 71.2 100 46.0
ECA248G2885 Erigeron canadensis HOM05D008143 ORTHO05D010256 5.0e-11 71.2 86 48.8
Nn1g00548 Nelumbo nucifera HOM05D008143 ORTHO05D010256 1.9e-10 69.3 98 48.0
Potri.014G178900 Populus trichocarpa HOM05D008143 ORTHO05D010256 2.5e-10 68.9 83 50.6
Aqoxy3G02407 Aquilegia oxysepala HOM05D008143 ORTHO05D010256 5.6e-10 67.8 70 57.1
AUR62023336 Chenopodium quinoa HOM05D008143 ORTHO05D010256 5.6e-10 67.8 56 71.4
MSTRG.28120 Avicennia marina HOM05D008143 ORTHO05D010256 7.3e-10 67.4 59 62.7
Nitab4.5_0001209g0030 Nicotiana tabacum HOM05D008143 ORTHO05D010256 9.5e-10 67.0 108 42.6
Cc02_g26140 Coffea canephora HOM05D008143 ORTHO05D010256 1.2e-09 66.6 77 51.9
PSO017G2691 Papaver somniferum HOM05D008143 ORTHO05D010256 1.2e-09 66.6 87 48.3
TAR636G2193 Trochodendron aralioides HOM05D008143 ORTHO05D010256 2.1e-09 65.9 81 50.6
Sed0022797 Sechium edule HOM05D008143 ORTHO05D010256 2.8e-09 65.5 100 45.0
Nn6g33614 Nelumbo nucifera HOM05D008143 ORTHO05D010256 4.7e-09 64.7 72 56.9
SGA_v2.0_scaffold4G02202 Striga asiatica HOM05D008143 ORTHO05D010256 1.1e-08 63.5 98 42.9
Peaxi162Scf01110g00012 Petunia axillaris HOM05D008143 ORTHO05D010256 4.0e-08 61.6 85 50.6
PSO170G4801 Papaver somniferum HOM05D008143 ORTHO05D010256 8.9e-08 60.5 93 45.2
DCAR_015763 Daucus carota HOM05D008143 ORTHO05D010256 4.4e-07 58.2 74 51.4
Rhsim01G0146400 Rhododendron simsii HOM05D002374 ORTHO05D010256 7.5e-07 57.4 60 51.7
VMungo1080G1030 Vigna mungo HOM05D008143 ORTHO05D010256 3.7e-06 55.1 70 47.1
MD02G1236800 Malus domestica HOM05D008143 ORTHO05D010256 6.4e-06 54.3 45 68.9


User provided reference genes

Program Settings