Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.04G124900 Glycine max HOM05D009639 ORTHO05D010690 0.0e+00 1525.8 768 100.0
Glyma.06G313400 Glycine max HOM05D009639 ORTHO05D010690 0.0e+00 1233.4 766 84.1
Phvul.005G012500 Phaseolus vulgaris HOM05D009639 ORTHO05D010690 8.5e-255 884.0 800 62.6
VMungo1080G0201 Vigna mungo HOM05D009639 ORTHO05D010690 5.1e-199 698.7 744 55.2
Lj3g0012055 Lotus japonicus HOM05D009639 ORTHO05D010690 1.8e-164 583.9 767 47.1
Psat4g150240 Pisum sativum HOM05D009639 ORTHO05D010690 4.4e-142 509.6 747 44.0
TPR.G24389 Trifolium pratense HOM05D009639 ORTHO05D010690 9.4e-137 491.9 784 42.9
Medtr3g010860 Medicago truncatula HOM05D009639 ORTHO05D010690 3.1e-132 476.9 767 42.2
Ca_25852_v3 Cicer arietinum L. HOM05D009639 ORTHO05D010690 9.8e-126 455.3 709 43.7
Lalb_Chr18g0048201 Lupinus albus HOM05D009639 ORTHO05D010690 1.9e-97 361.3 775 36.6
Psat5g223640 Pisum sativum HOM05D009639 ORTHO05D010690 1.2e-86 325.5 517 43.1
Haze_02948 Corylus avellana HOM05D009639 ORTHO05D010690 3.3e-57 227.6 774 29.2
Cfa010987 Carpinus fangiana HOM05D009639 ORTHO05D010690 7.4e-49 199.9 681 29.4
QL04p023061 Quercus lobata HOM05D009639 ORTHO05D010690 1.6e-43 182.2 820 27.6
Atru.chr12.1203 Acer truncatum HOM05D009639 ORTHO05D006184 8.8e-42 176.4 800 27.0
Potri.003G188600 Populus trichocarpa HOM05D009639 ORTHO05D010690 1.3e-32 146.0 950 23.7
Manes.11G010500 Manihot esculenta HOM05D009639 ORTHO05D010690 2.8e-32 144.8 786 26.3
Ciclev10002267m.g Citrus clementina HOM05D009639 ORTHO05D010690 3.0e-26 124.8 145 49.7
Psat5g223680 Pisum sativum HOM05D009639 ORTHO05D010690 6.7e-26 123.6 175 43.4
TAR623G0143 Trochodendron aralioides HOM05D009639 ORTHO05D010690 6.7e-26 123.6 129 56.6
CANSAT56G3803 Cannabis sativa HOM05D009639 ORTHO05D010690 8.8e-26 123.2 821 24.2
CiPaw.13G018700 Carya illinoinensis HOM05D009639 ORTHO05D010690 1.7e-24 119.0 419 32.2
Nn7g37150 Nelumbo nucifera HOM05D009639 ORTHO05D010690 3.7e-24 117.9 128 50.0
Sabra03G0137900 Salix brachista HOM05D009639 ORTHO05D010690 4.8e-24 117.5 208 38.9
Aqoxy1G01630 Aquilegia oxysepala HOM05D028564 ORTHO05D010690 1.1e-20 106.3 140 45.7
Aqoxy5G04141 Aquilegia oxysepala HOM05D009639 ORTHO05D010690 2.3e-18 98.6 124 46.8
Medtr3g010890 Medicago truncatula HOM05D009639 ORTHO05D010690 1.5e-17 95.9 167 40.7
ATR1096G036 Amborella trichopoda HOM05D009639 ORTHO05D010690 1.3e-16 92.8 147 40.8
Aa31LG10G5240 Aethionema arabicum HOM05D010442 ORTHO05D010690 4.8e-16 90.9 271 31.4
SEGI_28746 Sequoiadendron giganteum HOM05D003060 ORTHO05D001716 5.9e-14 84.0 159 37.7
Carub.0001s3767 Capsella rubella HOM05D010442 ORTHO05D010690 1.7e-13 82.4 129 42.6
Atru.chr12.1201 Acer truncatum HOM05D009639 ORTHO05D010690 2.2e-13 82.0 115 43.5
SEGI_40933 Sequoiadendron giganteum HOM05D003060 ORTHO05D001716 8.5e-13 80.1 239 31.4
BcaC08g43056 Brassica carinata HOM05D010442 ORTHO05D010690 1.1e-12 79.7 172 34.3
C06p03150 Brassica napus HOM05D010442 ORTHO05D010690 1.1e-12 79.7 172 34.3
BolC6t35433H Brassica oleracea HOM05D010442 ORTHO05D010690 1.1e-12 79.7 172 34.3
AL1G55200 Arabidopsis lyrata HOM05D010442 ORTHO05D010690 1.5e-12 79.3 214 33.6
A06p04380 Brassica napus HOM05D010442 ORTHO05D010690 1.5e-12 79.3 172 35.5
BcaB07g33745 Brassica carinata HOM05D010442 ORTHO05D010690 3.2e-12 78.2 175 34.9
AT1G48560 Arabidopsis thaliana HOM05D010442 ORTHO05D010690 4.2e-12 77.8 127 39.4
Sp1g35500 Schrenkiella parvula HOM05D010442 ORTHO05D010690 4.2e-12 77.8 268 28.4
THA.LOC104809844 Tarenaya hassleriana HOM05D010442 ORTHO05D010690 1.2e-11 76.3 128 39.8
BraA06t23642Z Brassica rapa HOM05D010442 ORTHO05D010690 2.1e-11 75.5 172 35.5
Thhalv10011299m.g Eutrema salsugineum HOM05D010442 ORTHO05D010690 1.2e-09 69.7 140 37.1
Lj6A674G26 Lonicera japonica HOM05D003060 ORTHO05D001716 2.2e-08 65.5 105 39.0
ClCG02G015530 Citrullus lanatus HOM05D003060 ORTHO05D001716 2.8e-08 65.1 126 34.1
CANSAT54G0820 Cannabis sativa HOM05D003060 ORTHO05D001716 8.3e-08 63.5 81 42.0
SEGI_14874 Sequoiadendron giganteum HOM05D000855 ORTHO05D001716 8.3e-08 63.5 76 46.1
TWI36G0905 Tripterygium wilfordii HOM05D003060 ORTHO05D001716 1.1e-07 63.2 92 40.2
CiPaw.08G163000 Carya illinoinensis HOM05D003060 ORTHO05D001716 1.4e-07 62.8 171 28.7
Sed0012843 Sechium edule HOM05D003060 ORTHO05D001716 1.8e-07 62.4 107 34.6
CsaV3_2G006550 Cucumis sativus L. HOM05D003060 ORTHO05D001716 2.4e-07 62.0 130 33.8
FvH4_6g06310 Fragaria vesca HOM05D003060 ORTHO05D001716 2.4e-07 62.0 89 40.4
FAN05G5493 Fragaria x ananassa HOM05D003060 ORTHO05D001716 2.4e-07 62.0 89 40.4
FAN14G2973 Fragaria x ananassa HOM05D003060 ORTHO05D001716 2.4e-07 62.0 89 40.4
TWI12G1080 Tripterygium wilfordii HOM05D003060 ORTHO05D001716 2.4e-07 62.0 92 39.1
FAN09G4310 Fragaria x ananassa HOM05D003060 ORTHO05D001716 3.1e-07 61.6 89 40.4
Lj7C593G6 Lonicera japonica HOM05D000855 ORTHO05D001716 3.1e-07 61.6 74 45.9
Potri.005G026800 Populus trichocarpa HOM05D003060 ORTHO05D001716 3.1e-07 61.6 75 46.7
Sabra05G0032100 Salix brachista HOM05D003060 ORTHO05D001716 3.1e-07 61.6 75 46.7
COL.COLO4_05531 Corchorus olitorius HOM05D003060 ORTHO05D001716 4.1e-07 61.2 94 37.2
MELO3C004230.2 Cucumis melo HOM05D003060 ORTHO05D001716 5.4e-07 60.8 77 42.9
Duzib116G0105 Durio zibethinus HOM05D003060 ORTHO05D001716 5.4e-07 60.8 207 28.5
FAN02G1847 Fragaria x ananassa HOM05D003060 ORTHO05D001716 5.4e-07 60.8 177 28.8
Phvul.006G090600 Phaseolus vulgaris HOM05D003060 ORTHO05D001716 5.4e-07 60.8 220 26.4
Actinidia19785 Actinidia chinensis HOM05D003060 ORTHO05D001716 7.0e-07 60.5 115 34.8
Lalb_Chr15g0077301 Lupinus albus HOM05D003060 ORTHO05D001716 7.0e-07 60.5 110 34.5
Sabra13G0021300 Salix brachista HOM05D003060 ORTHO05D001716 7.0e-07 60.5 75 45.3
VMungo0540G1887 Vigna mungo HOM05D003060 ORTHO05D001716 7.0e-07 60.5 183 25.7
Ciclev10000070m.g Citrus clementina HOM05D003060 ORTHO05D001716 9.1e-07 60.1 217 26.3
Glyma.19G234300 Glycine max HOM05D003060 ORTHO05D001716 9.1e-07 60.1 183 26.2
Gohir.D05G274200 Gossypium hirsutum HOM05D003060 ORTHO05D001716 9.1e-07 60.1 94 37.2
Gorai.009G287300 Gossypium raimondii HOM05D003060 ORTHO05D001716 9.1e-07 60.1 94 37.2
Ca_05807_v3 Cicer arietinum L. HOM05D003060 ORTHO05D001716 1.2e-06 59.7 109 32.1
Haze_04161 Corylus avellana HOM05D003060 ORTHO05D001716 1.2e-06 59.7 190 26.3
Duzib177G0733 Durio zibethinus HOM05D003060 ORTHO05D001716 1.2e-06 59.7 95 38.9
Duzib211G0658 Durio zibethinus HOM05D003060 ORTHO05D001716 1.2e-06 59.7 113 35.4
Gohir.A05G272000 Gossypium hirsutum HOM05D003060 ORTHO05D001716 1.2e-06 59.7 81 42.0
Aqoxy2G03022 Aquilegia oxysepala HOM05D003060 ORTHO05D001716 1.6e-06 59.3 200 27.0
Phvul.006G090511 Phaseolus vulgaris HOM05D003060 ORTHO05D001716 1.6e-06 59.3 183 26.2
arahy.Tifrunner.gnm1.ann1.LGT5H6 Arachis hypogaea HOM05D003060 ORTHO05D001716 2.0e-06 58.9 88 38.6
DCAR_004182 Daucus carota HOM05D000022 ORTHO05D000071 2.0e-06 58.9 101 35.6
Potri.013G018700 Populus trichocarpa HOM05D003060 ORTHO05D001716 2.0e-06 58.9 75 44.0
Actinidia19783 Actinidia chinensis HOM05D003060 ORTHO05D001716 2.7e-06 58.5 242 24.4
arahy.Tifrunner.gnm1.ann1.U2HTAJ Arachis hypogaea HOM05D003060 ORTHO05D001716 2.7e-06 58.5 88 38.6
Cfa006614 Carpinus fangiana HOM05D003060 ORTHO05D001716 2.7e-06 58.5 190 25.8
Lalb_Chr18g0045701 Lupinus albus HOM05D003060 ORTHO05D001716 2.7e-06 58.5 233 25.3
MD12G1216400 Malus domestica HOM05D003060 ORTHO05D001716 3.5e-06 58.2 105 35.2
Psat0s545g0040 Pisum sativum HOM05D003060 ORTHO05D001716 3.5e-06 58.2 96 37.5
Thecc.08G198500 Theobroma cacao HOM05D003060 ORTHO05D001716 3.5e-06 58.2 75 42.7
CSS0035274 Camellia sinensis var. sinensis HOM05D000855 ORTHO05D008469 4.5e-06 57.8 107 34.6
QL03p012691 Quercus lobata HOM05D003060 ORTHO05D001716 4.5e-06 57.8 173 27.7
CSS0017800 Camellia sinensis var. sinensis HOM05D000855 ORTHO05D001716 5.9e-06 57.4 107 34.6
Dinv33478 Davidia involucrata HOM05D000855 ORTHO05D001716 5.9e-06 57.4 73 43.8
Glyma.10G152700 Glycine max HOM05D003060 ORTHO05D001716 5.9e-06 57.4 240 24.2
Glyma.20G235700 Glycine max HOM05D003060 ORTHO05D001716 5.9e-06 57.4 237 24.5
SHI18113 Sapria himalayana HOM05D003060 ORTHO05D001716 7.7e-06 57.0 74 40.5
VMungo0540G0889 Vigna mungo HOM05D003060 ORTHO05D001716 7.7e-06 57.0 183 25.7


User provided reference genes

Program Settings