Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.04G111000 Glycine max HOM05D003874 ORTHO05D004545 2.4e-89 332.8 259 100.0
Glyma.06G323500 Glycine max HOM05D003874 ORTHO05D004545 4.8e-66 255.4 257 61.1
VMungo1080G0642 Vigna mungo HOM05D003874 ORTHO05D004545 6.7e-60 235.0 256 63.3
Phvul.005G002800 Phaseolus vulgaris HOM05D003874 ORTHO05D004545 1.0e-55 221.1 261 60.9
Lj3g0022236 Lotus japonicus HOM05D003874 ORTHO05D004545 1.7e-47 193.7 256 63.3
TPR.G25536 Trifolium pratense HOM05D003874 ORTHO05D004545 5.0e-47 192.2 265 50.6
Ca_27532_v3 Cicer arietinum L. HOM05D003874 ORTHO05D004545 1.8e-44 183.7 257 51.4
Psat5g232160 Pisum sativum HOM05D003874 ORTHO05D004545 3.9e-44 182.6 265 51.7
Medtr3g006350 Medicago truncatula HOM05D003874 ORTHO05D004545 7.0e-41 171.8 262 44.3
Lalb_Chr15g0080071 Lupinus albus HOM05D003874 ORTHO05D004545 3.8e-39 166.0 287 63.4
arahy.Tifrunner.gnm1.ann1.GHV9B3 Arachis hypogaea HOM05D003874 ORTHO05D004545 9.4e-38 161.4 257 49.8
arahy.Tifrunner.gnm1.ann1.N113B0 Arachis hypogaea HOM05D003874 ORTHO05D004545 3.9e-36 156.0 252 49.6
Prupe.8G006800 Prunus persica HOM05D003874 ORTHO05D004545 3.5e-24 116.3 109 60.6
Cfa008075 Carpinus fangiana HOM05D003874 ORTHO05D004545 1.3e-23 114.4 110 59.1
CANSAT21G0097 Cannabis sativa HOM05D003874 ORTHO05D004545 1.1e-22 111.3 112 57.1
Cpa.g.sc21.87 Carica papaya HOM05D003874 ORTHO05D004545 1.1e-22 111.3 109 56.0
COL.COLO4_25146 Corchorus olitorius HOM05D003874 ORTHO05D004545 1.1e-22 111.3 110 58.2
FAN20G2080 Fragaria x ananassa HOM05D003874 ORTHO05D004545 1.5e-22 110.9 109 58.7
FAN24G1984 Fragaria x ananassa HOM05D003874 ORTHO05D004545 1.5e-22 110.9 109 58.7
FAN27G1922 Fragaria x ananassa HOM05D003874 ORTHO05D004545 1.5e-22 110.9 109 58.7
Gohir.D13G118600 Gossypium hirsutum HOM05D003874 ORTHO05D004545 3.2e-22 109.8 110 57.3
Gorai.013G133000 Gossypium raimondii HOM05D003874 ORTHO05D004545 3.2e-22 109.8 110 57.3
GSVIVG01036285001 Vitis vinifera HOM05D003874 ORTHO05D004545 3.2e-22 109.8 113 56.6
FvH4_2g00770 Fragaria vesca HOM05D003874 ORTHO05D004545 4.2e-22 109.4 109 57.8
Gohir.A13G115500 Gossypium hirsutum HOM05D003874 ORTHO05D004545 4.2e-22 109.4 110 57.3
Potri.019G071300 Populus trichocarpa HOM05D003874 ORTHO05D004545 4.2e-22 109.4 112 58.0
CSS0025181 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 5.5e-22 109.0 112 54.5
Sabra13G0085100 Salix brachista HOM05D003874 ORTHO05D004545 5.5e-22 109.0 110 57.3
PGR042G0135 Punica granatum HOM05D003874 ORTHO05D004545 9.4e-22 108.2 113 57.5
Atru.chr13.2495 Acer truncatum HOM05D003874 ORTHO05D004545 1.2e-21 107.8 112 58.0
Atru.chr13.2507 Acer truncatum HOM05D003874 ORTHO05D004545 1.2e-21 107.8 112 58.0
Cc10_g08580 Coffea canephora HOM05D003874 ORTHO05D004545 1.2e-21 107.8 109 54.1
Duzib268G0037 Durio zibethinus HOM05D003874 ORTHO05D004545 1.2e-21 107.8 113 55.8
MD05G1003400 Malus domestica HOM05D003874 ORTHO05D004545 1.2e-21 107.8 109 57.8
Actinidia03528 Actinidia chinensis HOM05D003874 ORTHO05D004545 1.6e-21 107.5 109 55.0
Lj7A419T39 Lonicera japonica HOM05D003874 ORTHO05D004545 1.6e-21 107.5 113 54.0
QL09p001799 Quercus lobata HOM05D003874 ORTHO05D004545 1.6e-21 107.5 108 55.6
Ciclev10020185m.g Citrus clementina HOM05D003874 ORTHO05D004545 2.1e-21 107.1 113 56.6
MD10G1004400 Malus domestica HOM05D003874 ORTHO05D004545 2.1e-21 107.1 109 55.0
Actinidia29373 Actinidia chinensis HOM05D003874 ORTHO05D004545 3.6e-21 106.3 109 54.1
Rhsim12G0002900 Rhododendron simsii HOM05D003874 ORTHO05D004545 3.6e-21 106.3 109 54.1
HanXRQChr15g0484691 Helianthus annuus HOM05D003874 ORTHO05D004545 4.7e-21 105.9 108 52.8
RcHm_v2.0_Chr6g0251151 Rosa chinensis HOM05D003874 ORTHO05D004545 4.7e-21 105.9 109 56.9
Thecc.08G178800 Theobroma cacao HOM05D003874 ORTHO05D004545 4.7e-21 105.9 110 56.4
Manes.18G116100 Manihot esculenta HOM05D003874 ORTHO05D004545 6.1e-21 105.5 110 54.5
vmacro00941 Vaccinium macrocarpon HOM05D003874 ORTHO05D004545 8.0e-21 105.1 112 54.5
Manes.02G201800 Manihot esculenta HOM05D003874 ORTHO05D004545 1.0e-20 104.8 110 54.5
Dinv22112 Davidia involucrata HOM05D003874 ORTHO05D004545 1.8e-20 104.0 112 54.5
Nitab4.5_0000283g0160 Nicotiana tabacum HOM05D003874 ORTHO05D004545 1.8e-20 104.0 112 52.7
Dinv37410 Davidia involucrata HOM05D003874 ORTHO05D004545 3.0e-20 103.2 112 54.5
Potri.013G099200 Populus trichocarpa HOM05D003874 ORTHO05D004545 4.0e-20 102.8 110 55.5
CsaV3_5G039860 Cucumis sativus L. HOM05D003874 ORTHO05D004545 5.2e-20 102.4 108 52.8
Nitab4.5_0000554g0030 Nicotiana tabacum HOM05D003874 ORTHO05D004545 5.2e-20 102.4 107 52.3
Sed0021145 Sechium edule HOM05D003874 ORTHO05D004545 5.2e-20 102.4 108 54.6
PGSC0003DMG400008421 Solanum tuberosum HOM05D003874 ORTHO05D004545 5.2e-20 102.4 109 52.3
ClCG08G000760 Citrullus lanatus HOM05D003874 ORTHO05D004545 6.8e-20 102.1 108 52.8
Nitab4.5_0000980g0270 Nicotiana tabacum HOM05D003874 ORTHO05D004545 6.8e-20 102.1 109 51.4
TWI18G0284 Tripterygium wilfordii HOM05D003874 ORTHO05D004545 6.8e-20 102.1 112 51.8
Nitab4.5_0000213g0070 Nicotiana tabacum HOM05D003874 ORTHO05D004545 8.8e-20 101.7 107 52.3
AUR62013384 Chenopodium quinoa HOM05D003874 ORTHO05D004545 1.2e-19 101.3 111 55.9
AUR62038535 Chenopodium quinoa HOM05D003874 ORTHO05D004545 1.2e-19 101.3 111 55.9
Peaxi162Scf00078g00734 Petunia axillaris HOM05D003874 ORTHO05D004545 1.5e-19 100.9 109 51.4
CiPaw.04G009100 Carya illinoinensis HOM05D003874 ORTHO05D004545 2.0e-19 100.5 112 52.7
CSS0015095 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 2.6e-19 100.1 112 50.0
ECA232G3741 Erigeron canadensis HOM05D003874 ORTHO05D004545 2.6e-19 100.1 109 49.5
MELO3C022165.2 Cucumis melo HOM05D003874 ORTHO05D004545 3.4e-19 99.8 108 50.9
Sed0026799 Sechium edule HOM05D003874 ORTHO05D004545 3.4e-19 99.8 108 52.8
TWI75G0660 Tripterygium wilfordii HOM05D003874 ORTHO05D004545 3.4e-19 99.8 113 50.4
ClCG05G024400 Citrullus lanatus HOM05D003874 ORTHO05D004545 4.4e-19 99.4 108 52.8
EL10Ac1g01274 Beta vulgaris HOM05D003874 ORTHO05D004545 5.7e-19 99.0 111 55.0
CSS0009242 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 7.5e-19 98.6 112 49.1
Haze_13960 Corylus avellana HOM05D003874 ORTHO05D004545 7.5e-19 98.6 140 46.4
PSO170G4959 Papaver somniferum HOM05D003874 ORTHO05D004545 7.5e-19 98.6 108 51.9
SalBow7G3598 Salvia bowleyana HOM05D003874 ORTHO05D004545 7.5e-19 98.6 110 51.8
TAR376G0450 Trochodendron aralioides HOM05D003874 ORTHO05D004545 7.5e-19 98.6 110 50.9
Duzib177G0949 Durio zibethinus HOM05D003874 ORTHO05D004545 9.8e-19 98.2 110 52.7
Eucgr.F02945 Eucalyptus grandis HOM05D003874 ORTHO05D004545 1.7e-18 97.4 142 45.1
Aqoxy5G01942 Aquilegia oxysepala HOM05D003874 ORTHO05D004545 2.2e-18 97.1 112 51.8
Aqoxy6G00117 Aquilegia oxysepala HOM05D003874 ORTHO05D004545 2.2e-18 97.1 109 47.7
Migut.C01383 Erythranthe guttata HOM05D003874 ORTHO05D004545 2.8e-18 96.7 111 51.4
SalBow6G4185 Salvia bowleyana HOM05D003874 ORTHO05D004545 3.7e-18 96.3 113 49.6
PSO017G0683 Papaver somniferum HOM05D003874 ORTHO05D004545 6.3e-18 95.5 108 50.0
MSTRG.1601 Avicennia marina HOM05D003874 ORTHO05D004545 8.3e-18 95.1 110 47.3
CsaV3_2G033240 Cucumis sativus L. HOM05D003874 ORTHO05D004545 8.3e-18 95.1 111 50.5
MBI03_g29107_MAGBIO Magnolia biondii HOM05D003874 ORTHO05D004545 8.3e-18 95.1 113 47.8
SGA_v2.0_scaffold118G32614 Striga asiatica HOM05D003874 ORTHO05D004545 8.3e-18 95.1 110 49.1
DCAR_014068 Daucus carota HOM05D003874 ORTHO05D004545 1.4e-17 94.4 109 47.7
Nn5g27385 Nelumbo nucifera HOM05D003874 ORTHO05D004545 1.4e-17 94.4 110 51.8
CiPaw.03G014100 Carya illinoinensis HOM05D003874 ORTHO05D004545 2.4e-17 93.6 110 51.8
DCAR_003510 Daucus carota HOM05D003874 ORTHO05D004545 2.4e-17 93.6 114 46.5
Ah.05g170390 Amaranthus hybridus HOM05D003874 ORTHO05D004545 3.1e-17 93.2 114 52.6
ClCG11G008410 Citrullus lanatus HOM05D003874 ORTHO05D004545 3.1e-17 93.2 111 49.5
SalBow1G3841 Salvia bowleyana HOM05D003874 ORTHO05D004545 4.1e-17 92.8 114 48.2
TAR628G1590 Trochodendron aralioides HOM05D003874 ORTHO05D004545 4.1e-17 92.8 112 49.1
CDE02G0043 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 7.0e-17 92.0 110 46.4
SGA_v2.0_scaffold24G10651 Striga asiatica HOM05D003874 ORTHO05D004545 9.1e-17 91.7 110 47.3
CDE08G0633 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 1.2e-16 91.3 110 45.5
THA.LOC104808737 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 1.2e-16 91.3 112 48.2
MELO3C012083.2 Cucumis melo HOM05D003874 ORTHO05D004545 2.0e-16 90.5 109 49.5
Hund16917 Selenicereus undatus HOM05D003874 ORTHO05D004545 2.0e-16 90.5 110 50.9
CsaV3_5G032550 Cucumis sativus L. HOM05D003874 ORTHO05D004545 2.7e-16 90.1 109 48.6
THA.LOC104813368 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 2.7e-16 90.1 112 45.5
Lsat_1_v5_gn_9_75521 Lactuca sativa HOM05D003874 ORTHO05D004545 3.5e-16 89.7 108 45.4
Oeu028635.2 Olea europaea HOM05D003874 ORTHO05D004545 4.5e-16 89.4 127 41.7
CSS0021765 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 5.9e-16 89.0 74 62.2
THA.LOC104806752 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 5.9e-16 89.0 109 45.9
AL6G43860 Arabidopsis lyrata HOM05D003874 ORTHO05D004545 1.7e-15 87.4 108 47.2
BcaB05g23922 Brassica carinata HOM05D003874 ORTHO05D004545 1.7e-15 87.4 108 46.3
AT4G10080 Arabidopsis thaliana HOM05D003874 ORTHO05D004545 2.9e-15 86.7 108 47.2
CAN.G761.11 Capsicum annuum HOM05D003874 ORTHO05D004545 2.9e-15 86.7 106 44.3
Aa31LG9G4130 Aethionema arabicum HOM05D003874 ORTHO05D004545 5.0e-15 85.9 109 44.0
AT4G13530 Arabidopsis thaliana HOM05D003874 ORTHO05D004545 5.0e-15 85.9 112 50.0
MSTRG.24132 Avicennia marina HOM05D003874 ORTHO05D004545 5.0e-15 85.9 109 47.7
BcaC03g16428 Brassica carinata HOM05D003874 ORTHO05D004545 5.0e-15 85.9 108 45.4
A02p26740 Brassica napus HOM05D003874 ORTHO05D004545 5.0e-15 85.9 108 45.4
C02p42530 Brassica napus HOM05D003874 ORTHO05D004545 5.0e-15 85.9 108 45.4
BraA02t07678Z Brassica rapa HOM05D003874 ORTHO05D004545 5.0e-15 85.9 108 45.4
Carub.0006s2864 Capsella rubella HOM05D003874 ORTHO05D004545 5.0e-15 85.9 108 46.3
CAN.G761.10 Capsicum annuum HOM05D003874 ORTHO05D004545 5.0e-15 85.9 106 44.3
CARHR261100 Cardamine hirsuta HOM05D003874 ORTHO05D004545 5.0e-15 85.9 109 46.8
Thhalv10028826m.g Eutrema salsugineum HOM05D003874 ORTHO05D004545 5.0e-15 85.9 108 46.3
AL7G43110 Arabidopsis lyrata HOM05D003874 ORTHO05D004545 6.6e-15 85.5 99 51.5
BolC2t10292H Brassica oleracea HOM05D003874 ORTHO05D004545 1.1e-14 84.7 108 45.4
Carub.0007s2901 Capsella rubella HOM05D003874 ORTHO05D004545 1.1e-14 84.7 99 51.5
CARHR219160 Cardamine hirsuta HOM05D003874 ORTHO05D004545 1.1e-14 84.7 99 50.5
Solyc07g063050.1 Solanum lycopersicum HOM05D003874 ORTHO05D004545 1.9e-14 84.0 111 44.1
Sopen07g031240 Solanum pennellii HOM05D003874 ORTHO05D004545 1.9e-14 84.0 111 44.1
unitig_37.g13076 Utricularia gibba HOM05D003874 ORTHO05D004545 1.9e-14 84.0 109 44.0
PGSC0003DMG400012413 Solanum tuberosum HOM05D003874 ORTHO05D004545 2.5e-14 83.6 111 44.1
Aa31LG9G11920 Aethionema arabicum HOM05D003874 ORTHO05D004545 3.3e-14 83.2 109 43.1
Thhalv10025948m.g Eutrema salsugineum HOM05D003874 ORTHO05D004545 3.3e-14 83.2 113 47.8
Solyc11g040300.2 Solanum lycopersicum HOM05D003874 ORTHO05D004545 4.2e-14 82.8 74 58.1
BcaB01g01449 Brassica carinata HOM05D003874 ORTHO05D004545 5.5e-14 82.4 111 45.0
MSTRG.22473 Avicennia marina HOM05D003874 ORTHO05D004545 7.2e-14 82.0 110 42.7
MBI06_g14322_MAGBIO Magnolia biondii HOM05D003874 ORTHO05D004545 7.2e-14 82.0 109 45.9
Oeu046029.1 Olea europaea HOM05D003874 ORTHO05D004545 1.6e-13 80.9 90 46.7
Sabra19G0083400 Salix brachista HOM05D003637 ORTHO05D004175 3.6e-13 79.7 161 37.9
Sp6g07450 Schrenkiella parvula HOM05D003874 ORTHO05D004545 3.6e-13 79.7 108 45.4
THA.LOC104821626 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 6.1e-13 79.0 113 41.6
A09p28850 Brassica napus HOM05D003874 ORTHO05D004545 1.4e-12 77.8 108 43.5
BraA09t38447Z Brassica rapa HOM05D003874 ORTHO05D004545 1.4e-12 77.8 108 43.5
Zm00001eb366050 Zea mays HOM05D003874 ORTHO05D004545 1.8e-12 77.4 104 42.3
BcaC08g44301 Brassica carinata HOM05D003874 ORTHO05D004545 3.0e-12 76.6 115 48.7
A05p16560 Brassica napus HOM05D003874 ORTHO05D004545 4.0e-12 76.3 115 48.7
BraA05t20564Z Brassica rapa HOM05D003874 ORTHO05D004545 4.0e-12 76.3 115 48.7
C06p17230 Brassica napus HOM05D003874 ORTHO05D004545 5.2e-12 75.9 115 48.7
BolC6t36923H Brassica oleracea HOM05D003874 ORTHO05D004545 5.2e-12 75.9 115 48.7
CDE07G0664 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 5.2e-12 75.9 112 40.2
Sp7g11130 Schrenkiella parvula HOM05D003874 ORTHO05D004545 1.5e-11 74.3 116 47.4
Zm00001eb182290 Zea mays HOM05D003874 ORTHO05D004545 1.5e-11 74.3 109 46.8
Os02g0558500 Oryza sativa ssp. japonica HOM05D003874 ORTHO05D004545 2.6e-11 73.6 97 44.3
BcaC04g21012 Brassica carinata HOM05D003874 ORTHO05D004545 4.9e-10 69.3 108 40.7
C09p36670 Brassica napus HOM05D003874 ORTHO05D004545 4.9e-10 69.3 108 40.7
BolC9t56498H Brassica oleracea HOM05D003874 ORTHO05D004545 4.9e-10 69.3 108 40.7
SEGI_28614 Sequoiadendron giganteum HOM05D003874 ORTHO05D004545 4.1e-09 66.2 92 40.2
Sopen11g018310 Solanum pennellii HOM05D003874 ORTHO05D004545 5.4e-09 65.9 77 45.5
Zm00001eb145550 Zea mays HOM05D003874 ORTHO05D004545 7.0e-09 65.5 103 36.9
HPP92_005639 Vanilla planifolia HOM05D000572 ORTHO05D000840 9.2e-09 65.1 92 37.0
Sabra13G0083800 Salix brachista HOM05D003874 ORTHO05D004545 1.3e-07 61.2 77 46.8
MELO3C008094.2 Cucumis melo HOM05D003874 ORTHO05D004545 2.9e-07 60.1 100 38.0
HPP92_009210 Vanilla planifolia HOM05D003874 ORTHO05D004545 8.6e-07 58.5 89 39.3
Sc21g0007200 Simmondsia chinensis HOM05D003874 ORTHO05D004545 3.3e-06 56.6 65 46.2


User provided reference genes

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