Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.04G105400 Glycine max HOM05D006892 ORTHO05D008592 8.7e-47 189.9 91 100.0
Glyma.07G139200 Glycine max HOM05D006892 ORTHO05D008592 6.2e-37 157.1 79 94.9
Glyma.18G189800 Glycine max HOM05D006892 ORTHO05D008592 1.8e-36 155.6 77 97.4
Lj1g0020029 Lotus japonicus HOM05D006892 ORTHO05D008592 2.7e-32 141.7 79 83.5
Lalb_Chr19g0125031 Lupinus albus HOM05D006892 ORTHO05D008592 1.1e-30 136.3 79 81.0
Lalb_Chr03g0042701 Lupinus albus HOM05D006892 ORTHO05D008592 1.3e-29 132.9 79 79.7
Psat3g133520 Pisum sativum HOM05D006892 ORTHO05D008592 2.1e-29 132.1 75 81.3
TPR.G34921 Trifolium pratense HOM05D006892 ORTHO05D008592 2.4e-28 128.6 80 77.5
Phvul.008G114100 Phaseolus vulgaris HOM05D006892 ORTHO05D008592 3.1e-28 128.3 79 81.0
arahy.Tifrunner.gnm1.ann1.AC77RP Arachis hypogaea HOM05D006892 ORTHO05D008592 1.2e-27 126.3 79 81.0
arahy.Tifrunner.gnm1.ann1.71B432 Arachis hypogaea HOM05D006892 ORTHO05D008592 1.5e-27 125.9 79 81.0
Lj3g0005144 Lotus japonicus HOM05D006892 ORTHO05D008592 1.7e-26 122.5 77 74.0
Medtr7g065130 Medicago truncatula HOM05D006892 ORTHO05D008592 1.7e-26 122.5 79 70.9
Glyma.03G073200 Glycine max HOM05D006892 ORTHO05D008592 1.9e-25 119.0 80 73.8
Glyma.01G105400 Glycine max HOM05D006892 ORTHO05D008592 1.2e-24 116.3 79 70.9
Medtr4g019640 Medicago truncatula HOM05D006892 ORTHO05D008592 1.3e-23 112.8 81 66.7
Phvul.010G009200 Phaseolus vulgaris HOM05D006892 ORTHO05D008592 1.5e-22 109.4 76 68.4
Psat7g241320 Pisum sativum HOM05D006892 ORTHO05D008592 4.3e-22 107.8 82 62.2
arahy.Tifrunner.gnm1.ann1.KB6CC9 Arachis hypogaea HOM05D006892 ORTHO05D008592 3.1e-20 101.7 56 76.8
arahy.Tifrunner.gnm1.ann1.KX701I Arachis hypogaea HOM05D006892 ORTHO05D008592 3.1e-20 101.7 56 76.8
TPR.G32561 Trifolium pratense HOM05D006892 ORTHO05D008592 9.0e-20 100.1 83 59.0
Prupe.6G264500 Prunus persica HOM05D006892 ORTHO05D008592 3.4e-19 98.2 79 51.9
RcHm_v2.0_Chr3g0464651 Rosa chinensis HOM05D006892 ORTHO05D008592 1.0e-18 96.7 75 56.0
Atru.chr8.2090 Acer truncatum HOM05D006892 ORTHO05D008592 1.7e-18 95.9 79 55.7
Haze_20883 Corylus avellana HOM05D006892 ORTHO05D008592 8.5e-18 93.6 78 59.0
Haze_20892 Corylus avellana HOM05D006892 ORTHO05D008592 8.5e-18 93.6 78 59.0
FAN14G5964 Fragaria x ananassa HOM05D006892 ORTHO05D008592 1.9e-17 92.4 75 52.0
FAN05G3252 Fragaria x ananassa HOM05D006892 ORTHO05D008592 5.5e-17 90.9 75 50.7
FAN09G3730 Fragaria x ananassa HOM05D006892 ORTHO05D008592 5.5e-17 90.9 75 50.7
TAR636G2473 Trochodendron aralioides HOM05D006892 ORTHO05D008592 5.5e-17 90.9 79 50.6
CiPaw.09G201300 Carya illinoinensis HOM05D006892 ORTHO05D008592 7.2e-17 90.5 90 54.4
FvH4_6g12730 Fragaria vesca HOM05D006892 ORTHO05D008592 9.3e-17 90.1 75 50.7
Dinv37115 Davidia involucrata HOM05D006892 ORTHO05D008592 1.2e-16 89.7 81 49.4
MD12G1154700 Malus domestica HOM05D006892 ORTHO05D008592 1.2e-16 89.7 69 56.5
FAN02G3144 Fragaria x ananassa HOM05D006892 ORTHO05D008592 1.6e-16 89.4 75 49.3
Thecc.05G029200 Theobroma cacao HOM05D006892 ORTHO05D008592 4.6e-16 87.8 73 54.8
Ciclev10013234m.g Citrus clementina HOM05D006892 ORTHO05D008592 6.1e-16 87.4 80 57.5
Manes.09G098400 Manihot esculenta HOM05D006892 ORTHO05D008592 7.9e-16 87.0 76 56.6
Gohir.D09G148100 Gossypium hirsutum HOM05D006892 ORTHO05D008592 5.1e-15 84.3 73 53.4
Gorai.006G169100 Gossypium raimondii HOM05D006892 ORTHO05D008592 5.1e-15 84.3 73 53.4
MD04G1138900 Malus domestica HOM05D006892 ORTHO05D008592 5.1e-15 84.3 78 53.8
COL.COLO4_14695 Corchorus olitorius HOM05D006892 ORTHO05D008592 6.7e-15 84.0 74 54.1
Gohir.A09G152400 Gossypium hirsutum HOM05D006892 ORTHO05D008592 6.7e-15 84.0 73 53.4
TAR623G0452 Trochodendron aralioides HOM05D006892 ORTHO05D008592 8.8e-15 83.6 77 51.9
Dinv34454 Davidia involucrata HOM05D006892 ORTHO05D008592 2.5e-14 82.0 78 47.4
Manes.08G082100 Manihot esculenta HOM05D006892 ORTHO05D008592 4.3e-14 81.3 71 50.7
TAR633G0729 Trochodendron aralioides HOM05D006892 ORTHO05D008592 4.3e-14 81.3 77 49.4
CiPaw.10G149300 Carya illinoinensis HOM05D006892 ORTHO05D008592 1.3e-13 79.7 79 53.2
Hma1.2p1_0039F.1_g024865 Hydrangea macrophylla HOM05D006892 ORTHO05D008592 2.2e-13 79.0 77 50.6
Hma1.2p1_0039F.1_g024870 Hydrangea macrophylla HOM05D006892 ORTHO05D008592 2.2e-13 79.0 77 50.6
Potri.006G092300 Populus trichocarpa HOM05D006892 ORTHO05D008592 2.2e-13 79.0 78 50.0
GSVIVG01016437001 Vitis vinifera HOM05D006892 ORTHO05D008592 3.7e-13 78.2 71 52.1
Gohir.D04G125400 Gossypium hirsutum HOM05D006892 ORTHO05D008592 4.8e-13 77.8 79 46.8
Gorai.012G108500 Gossypium raimondii HOM05D006892 ORTHO05D008592 4.8e-13 77.8 79 46.8
CSS0009632 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 1.1e-12 76.6 83 47.0
Haze_18710 Corylus avellana HOM05D006892 ORTHO05D008592 1.4e-12 76.3 79 49.4
Sabra06G0070000 Salix brachista HOM05D006892 ORTHO05D008592 1.8e-12 75.9 77 48.1
CSS0005500 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 2.4e-12 75.5 84 44.0
CSS0020330 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 2.4e-12 75.5 83 45.8
Cpa.g.sc56.60 Carica papaya HOM05D006892 ORTHO05D008592 2.4e-12 75.5 79 48.1
MBI14_g02866_MAGBIO Magnolia biondii HOM05D006892 ORTHO05D008592 2.4e-12 75.5 79 45.6
Potri.016G103900 Populus trichocarpa HOM05D006892 ORTHO05D008592 2.4e-12 75.5 77 49.4
HanXRQChr05g0156901 Helianthus annuus HOM05D006892 ORTHO05D008592 3.1e-12 75.1 80 42.5
MBI05_g02667_MAGBIO Magnolia biondii HOM05D006892 ORTHO05D008592 3.1e-12 75.1 79 44.3
Haze_17148 Corylus avellana HOM05D000015 ORTHO05D000270 4.1e-12 74.7 71 50.7
Lsat_1_v5_gn_9_32981 Lactuca sativa HOM05D006892 ORTHO05D008592 4.1e-12 74.7 79 44.3
MBI14_g02865_MAGBIO Magnolia biondii HOM05D006892 ORTHO05D008592 4.1e-12 74.7 79 45.6
Potri.010G196500 Populus trichocarpa HOM05D006892 ORTHO05D008592 4.1e-12 74.7 70 45.7
Rhsim05G0199800 Rhododendron simsii HOM05D006892 ORTHO05D008592 4.1e-12 74.7 83 45.8
Haze_17150 Corylus avellana HOM05D006892 ORTHO05D008592 5.3e-12 74.3 81 49.4
Gohir.A04G085600 Gossypium hirsutum HOM05D006892 ORTHO05D008592 6.9e-12 73.9 71 49.3
CSS0014654 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 9.1e-12 73.6 82 46.3
Sabra10G0151100 Salix brachista HOM05D006892 ORTHO05D008592 1.2e-11 73.2 70 51.4
Actinidia13165 Actinidia chinensis HOM05D006892 ORTHO05D008592 2.6e-11 72.0 79 45.6
Ciclev10033223m.g Citrus clementina HOM05D006892 ORTHO05D008592 4.5e-11 71.2 72 47.2
Cc06_g02080 Coffea canephora HOM05D006892 ORTHO05D008592 4.5e-11 71.2 83 45.8
Nn2g13528 Nelumbo nucifera HOM05D006892 ORTHO05D008592 5.9e-11 70.9 79 44.3
MBI14_g02869_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 1.3e-10 69.7 42 61.9
GSVIVG01034067001 Vitis vinifera HOM05D006892 ORTHO05D008592 1.3e-10 69.7 66 54.5
Sabra08G0045200 Salix brachista HOM05D006892 ORTHO05D008592 2.2e-10 68.9 72 45.8
CSS0011916 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 2.9e-10 68.6 81 46.9
ClCG04G007580 Citrullus lanatus HOM05D006892 ORTHO05D008592 2.9e-10 68.6 45 60.0
COL.COLO4_36543 Corchorus olitorius HOM05D006892 ORTHO05D008592 2.9e-10 68.6 65 47.7
Phvul.001G238200 Phaseolus vulgaris HOM05D006892 ORTHO05D008592 2.9e-10 68.6 73 41.1
Atru.chr12.266 Acer truncatum HOM05D006892 ORTHO05D008592 3.8e-10 68.2 82 46.3
Cfa001402 Carpinus fangiana HOM05D006892 ORTHO05D008592 6.5e-10 67.4 80 45.0
CiPaw.01G293100 Carya illinoinensis HOM05D006892 ORTHO05D008592 6.5e-10 67.4 80 37.5
DCAR_028810 Daucus carota HOM05D006892 ORTHO05D008592 6.5e-10 67.4 43 60.5
Medtr3g069540 Medicago truncatula HOM05D006892 ORTHO05D008592 8.5e-10 67.0 73 46.6
Manes.07G122400 Manihot esculenta HOM05D006892 ORTHO05D008592 1.9e-09 65.9 74 43.2
Potri.008G061600 Populus trichocarpa HOM05D006892 ORTHO05D008592 1.9e-09 65.9 99 36.4
Manes.10G021300 Manihot esculenta HOM05D006892 ORTHO05D008592 2.5e-09 65.5 72 51.4
PGSC0003DMG400024270 Solanum tuberosum HOM05D006892 ORTHO05D008592 2.5e-09 65.5 81 42.0
TAR633G0009 Trochodendron aralioides HOM05D006892 ORTHO05D414936 2.5e-09 65.5 76 47.4
MELO3C033485.2 Cucumis melo HOM05D006892 ORTHO05D008592 3.2e-09 65.1 69 46.4
Sed0015200 Sechium edule HOM05D006892 ORTHO05D008592 3.2e-09 65.1 81 44.4
Glyma.18G033400 Glycine max HOM05D006892 ORTHO05D008592 4.2e-09 64.7 68 42.6
Thecc.10G031400 Theobroma cacao HOM05D006892 ORTHO05D008592 4.2e-09 64.7 77 44.2
Actinidia02903 Actinidia chinensis HOM05D006892 ORTHO05D008592 9.4e-09 63.5 78 43.6
Eucgr.G02995 Eucalyptus grandis HOM05D006892 ORTHO05D008592 9.4e-09 63.5 68 44.1
CAN.G697.1 Capsicum annuum HOM05D006892 ORTHO05D008592 1.6e-08 62.8 57 50.9
Lj6g0007525 Lotus japonicus HOM05D006892 ORTHO05D008592 4.7e-08 61.2 79 43.0
Cpa.g.sc19.256 Carica papaya HOM05D006892 ORTHO05D008592 7.9e-08 60.5 74 47.3
Eucgr.G02997 Eucalyptus grandis HOM05D006892 ORTHO05D008592 1.4e-07 59.7 68 42.6
Gorai.011G273300 Gossypium raimondii HOM05D006892 ORTHO05D008592 1.4e-07 59.7 77 44.2
Sopen09g006180 Solanum pennellii HOM05D006892 ORTHO05D008592 1.8e-07 59.3 82 41.5
Gohir.A10G225300 Gossypium hirsutum HOM05D006892 ORTHO05D008592 2.3e-07 58.9 73 42.5
arahy.Tifrunner.gnm1.ann1.F5D7CA Arachis hypogaea HOM05D006892 ORTHO05D008592 5.1e-07 57.8 81 39.5
CDE02G2266 Ceratophyllum demersum HOM05D006892 ORTHO05D008592 6.7e-07 57.4 80 36.2
HPP92_019858 Vanilla planifolia HOM05D006892 ORTHO05D008592 6.7e-07 57.4 52 44.2
Gohir.D10G238364 Gossypium hirsutum HOM05D006892 ORTHO05D008592 1.5e-06 56.2 73 41.1
Medtr4g029470 Medicago truncatula HOM05D006892 ORTHO05D259580 1.5e-06 56.2 34 73.5
Sopen03g027280 Solanum pennellii HOM05D006892 ORTHO05D008592 1.5e-06 56.2 41 51.2
HanXRQChr08g0221291 Helianthus annuus HOM05D006892 ORTHO05D008592 2.0e-06 55.8 82 37.8
Sopen09g006190 Solanum pennellii HOM05D006892 ORTHO05D008592 2.0e-06 55.8 47 51.1
Sc07g0007010 Simmondsia chinensis HOM05D006892 ORTHO05D008592 3.3e-06 55.1 82 41.5
TPR.G33720 Trifolium pratense HOM05D006892 ORTHO05D008592 3.3e-06 55.1 77 39.0
arahy.Tifrunner.gnm1.ann1.J5YN7E Arachis hypogaea HOM05D006892 ORTHO05D008592 7.4e-06 53.9 81 37.0


User provided reference genes

Program Settings