Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.04G098500 Glycine max HOM05D003707 ORTHO05D004309 1.7e-154 549.3 280 100.0
Glyma.06G100100 Glycine max HOM05D003707 ORTHO05D004309 3.1e-135 485.3 273 91.6
Phvul.009G033700 Phaseolus vulgaris HOM05D003707 ORTHO05D004309 1.8e-103 379.8 271 73.1
VMungo1309G1468 Vigna mungo HOM05D003707 ORTHO05D004309 7.9e-99 364.4 269 69.5
Lalb_Chr11g0065241 Lupinus albus HOM05D003707 ORTHO05D004309 6.9e-87 324.7 266 63.2
arahy.Tifrunner.gnm1.ann1.K5H584 Arachis hypogaea HOM05D003707 ORTHO05D004309 9.1e-87 324.3 271 63.1
arahy.Tifrunner.gnm1.ann1.NXYL2L Arachis hypogaea HOM05D003707 ORTHO05D004309 2.0e-86 323.2 271 62.7
Lj1g0011682 Lotus japonicus HOM05D003707 ORTHO05D004309 1.9e-84 316.6 271 61.6
Ca_16033_v3 Cicer arietinum L. HOM05D003707 ORTHO05D004309 1.1e-79 300.8 271 60.5
Medtr3g099600 Medicago truncatula HOM05D003707 ORTHO05D004309 1.8e-79 300.1 271 62.4
Glyma.02G209600 Glycine max HOM05D003707 ORTHO05D004309 1.7e-77 293.5 276 57.6
Cfa017898 Carpinus fangiana HOM05D003707 ORTHO05D004309 3.2e-76 289.3 276 55.8
Glyma.14G177700 Glycine max HOM05D003707 ORTHO05D004309 3.6e-75 285.8 273 57.5
Ca_16005_v3 Cicer arietinum L. HOM05D003707 ORTHO05D004309 6.1e-75 285.0 274 56.2
Psat2g069400 Pisum sativum HOM05D003707 ORTHO05D004309 3.9e-74 282.3 259 57.5
TPR.G6353 Trifolium pratense HOM05D003707 ORTHO05D004309 3.9e-74 282.3 270 59.6
VMungo0647G1227 Vigna mungo HOM05D003707 ORTHO05D004309 5.7e-73 278.5 269 53.9
TPR.G12497 Trifolium pratense HOM05D003707 ORTHO05D004309 2.4e-71 273.1 323 48.3
Lj4C96G4 Lonicera japonica HOM05D003707 ORTHO05D004309 1.2e-70 270.8 277 51.3
Duzib093G2197 Durio zibethinus HOM05D003707 ORTHO05D004309 2.6e-70 269.6 276 52.9
QL02p002269 Quercus lobata HOM05D003707 ORTHO05D004309 3.5e-70 269.2 276 54.0
Gohir.A06G032900 Gossypium hirsutum HOM05D003707 ORTHO05D004309 7.7e-70 268.1 270 52.2
Hma1.2p1_1180F.1_g264680 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 7.7e-70 268.1 278 51.8
Sopen04g029730 Solanum pennellii HOM05D003707 ORTHO05D004309 1.0e-69 267.7 284 49.3
Duzib041G0396 Durio zibethinus HOM05D003707 ORTHO05D004309 1.7e-69 266.9 277 53.1
Psat5g050280 Pisum sativum HOM05D003707 ORTHO05D004309 1.7e-69 266.9 221 63.3
Phvul.008G177200 Phaseolus vulgaris HOM05D003707 ORTHO05D004309 2.9e-69 266.2 269 52.8
TWI56G1284 Tripterygium wilfordii HOM05D003707 ORTHO05D004309 6.5e-69 265.0 277 52.3
MD15G1377500 Malus domestica HOM05D003707 ORTHO05D004309 8.5e-69 264.6 276 52.2
Nitab4.5_0003374g0030 Nicotiana tabacum HOM05D003707 ORTHO05D004309 1.1e-68 264.2 284 49.3
Haze_18252 Corylus avellana HOM05D003707 ORTHO05D004309 1.9e-68 263.5 276 52.9
GSVIVG01009092001 Vitis vinifera HOM05D003707 ORTHO05D004309 1.9e-68 263.5 277 52.3
MD08G1190000 Malus domestica HOM05D003707 ORTHO05D004309 2.5e-68 263.1 276 51.8
CiPaw.15G045200 Carya illinoinensis HOM05D003707 ORTHO05D004309 3.2e-68 262.7 265 55.5
Gohir.A05G223200 Gossypium hirsutum HOM05D003707 ORTHO05D004309 3.2e-68 262.7 276 50.4
Solyc04g074760.3 Solanum lycopersicum HOM05D003707 ORTHO05D004309 4.2e-68 262.3 284 48.9
Nitab4.5_0009374g0030 Nicotiana tabacum HOM05D003707 ORTHO05D004309 3.6e-67 259.2 284 50.0
Gohir.D05G225900 Gossypium hirsutum HOM05D003707 ORTHO05D004309 4.7e-67 258.8 275 49.8
Gorai.009G233400 Gossypium raimondii HOM05D003707 ORTHO05D004309 4.7e-67 258.8 275 49.8
FAN13G1833 Fragaria x ananassa HOM05D003707 ORTHO05D004309 2.3e-66 256.5 275 51.3
CAN.G1173.6 Capsicum annuum HOM05D003707 ORTHO05D004309 3.0e-66 256.1 277 49.1
CiPaw.16G032500 Carya illinoinensis HOM05D003707 ORTHO05D004309 8.8e-66 254.6 276 50.7
FAN18G3842 Fragaria x ananassa HOM05D003707 ORTHO05D004309 1.2e-65 254.2 275 50.5
FvH4_5g36300 Fragaria vesca HOM05D003707 ORTHO05D004309 2.6e-65 253.1 275 50.5
Hma1.2p1_1568F.1_g291110 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 2.6e-65 253.1 276 48.9
Oeu024817.1 Olea europaea HOM05D003707 ORTHO05D004309 3.4e-65 252.7 263 51.7
Prupe.1G524200 Prunus persica HOM05D003707 ORTHO05D004309 3.4e-65 252.7 276 51.8
CSS0029872 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 4.4e-65 252.3 275 48.4
vmacro11166 Vaccinium macrocarpon HOM05D003707 ORTHO05D004309 4.4e-65 252.3 271 50.2
FAN04G1986 Fragaria x ananassa HOM05D003707 ORTHO05D004309 5.7e-65 251.9 274 50.4
Thecc.08G101000 Theobroma cacao HOM05D003707 ORTHO05D004309 9.8e-65 251.1 276 50.0
PGR031G2053 Punica granatum HOM05D003707 ORTHO05D004309 1.7e-64 250.4 266 50.8
Gorai.010G037300 Gossypium raimondii HOM05D003707 ORTHO05D004309 2.2e-64 250.0 270 49.3
Rhsim06G0077200 Rhododendron simsii HOM05D003707 ORTHO05D004309 2.8e-64 249.6 326 44.5
Gohir.D06G033800 Gossypium hirsutum HOM05D003707 ORTHO05D004309 1.4e-63 247.3 270 48.5
Thhalv10028816m.g Eutrema salsugineum HOM05D003707 ORTHO05D004309 9.1e-63 244.6 260 50.4
PGSC0003DMG400030841 Solanum tuberosum HOM05D003707 ORTHO05D004309 1.0e-61 241.1 277 47.3
Migut.N02874 Erythranthe guttata HOM05D003707 ORTHO05D004309 2.2e-61 240.0 286 47.2
RcHm_v2.0_Chr7g0238321 Rosa chinensis HOM05D003707 ORTHO05D004309 3.8e-61 239.2 280 47.9
TWI12G0071 Tripterygium wilfordii HOM05D003707 ORTHO05D004309 6.5e-61 238.4 249 51.8
Atru.chr13.1112 Acer truncatum HOM05D003707 ORTHO05D004309 8.5e-61 238.0 280 50.4
Potri.002G101400 Populus trichocarpa HOM05D003707 ORTHO05D004309 1.1e-60 237.7 283 48.8
EL10Ac1g01138 Beta vulgaris HOM05D003707 ORTHO05D004309 1.5e-60 237.3 277 45.8
ECA246G0538 Erigeron canadensis HOM05D003707 ORTHO05D004309 1.5e-60 237.3 277 47.3
Cpa.g.sc36.188 Carica papaya HOM05D003707 ORTHO05D004309 2.5e-60 236.5 276 46.0
Manes.18G063100 Manihot esculenta HOM05D003707 ORTHO05D004309 2.5e-60 236.5 280 47.5
PSO782G1937 Papaver somniferum HOM05D003707 ORTHO05D004309 7.2e-60 235.0 341 39.9
Eucgr.F00380 Eucalyptus grandis HOM05D003707 ORTHO05D004309 9.4e-60 234.6 278 48.6
HanXRQChr05g0163201 Helianthus annuus HOM05D003707 ORTHO05D004309 1.2e-59 234.2 277 45.1
THA.LOC104816564 Tarenaya hassleriana HOM05D003707 ORTHO05D004309 1.2e-59 234.2 271 49.4
Cc00_g22270 Coffea canephora HOM05D003707 ORTHO05D004309 2.7e-59 233.0 277 46.2
Lalb_Chr04g0253021 Lupinus albus HOM05D003707 ORTHO05D004309 6.1e-59 231.9 280 48.2
Sed0001081 Sechium edule HOM05D003707 ORTHO05D004309 1.0e-58 231.1 274 47.1
MSTRG.22171 Avicennia marina HOM05D003707 ORTHO05D004309 1.8e-58 230.3 283 46.3
Actinidia29599 Actinidia chinensis HOM05D003707 ORTHO05D004309 3.0e-58 229.6 275 45.1
Lsat_1_v5_gn_6_105560 Lactuca sativa HOM05D003707 ORTHO05D004309 6.8e-58 228.4 283 43.8
Ciclev10001810m.g Citrus clementina HOM05D003707 ORTHO05D004309 1.2e-57 227.6 275 46.9
PSO063G2842 Papaver somniferum HOM05D003707 ORTHO05D004309 3.4e-57 226.1 347 40.1
DCAR_005285 Daucus carota HOM05D003707 ORTHO05D004309 1.7e-56 223.8 284 46.1
PGR031G0663 Punica granatum HOM05D003707 ORTHO05D004309 1.1e-55 221.1 264 46.6
BcaB01g02805 Brassica carinata HOM05D003707 ORTHO05D004309 5.4e-55 218.8 279 44.4
Sabra02G0079500 Salix brachista HOM05D003707 ORTHO05D004309 5.4e-55 218.8 349 40.1
CARHR260110 Cardamine hirsuta HOM05D003707 ORTHO05D004309 9.1e-55 218.0 260 46.2
Actinidia10349 Actinidia chinensis HOM05D003707 ORTHO05D004309 2.0e-54 216.9 276 44.6
SalBow2G0015 Salvia bowleyana HOM05D003707 ORTHO05D004309 2.0e-54 216.9 283 44.2
SalBow2G2952 Salvia bowleyana HOM05D003707 ORTHO05D004309 2.0e-54 216.9 283 44.2
CsaV3_3G047770 Cucumis sativus L. HOM05D003707 ORTHO05D004309 2.7e-54 216.5 274 43.1
ECA247G2086 Erigeron canadensis HOM05D003707 ORTHO05D004309 3.5e-54 216.1 279 43.4
Sp6g08460 Schrenkiella parvula HOM05D003707 ORTHO05D004309 1.0e-53 214.5 260 45.4
HanXRQChr10g0278171 Helianthus annuus HOM05D003707 ORTHO05D004309 3.8e-53 212.6 278 44.6
Sed0003858 Sechium edule HOM05D003707 ORTHO05D004309 6.6e-53 211.8 263 44.9
Aa31LG9G14730 Aethionema arabicum HOM05D003707 ORTHO05D004309 1.9e-52 210.3 268 43.7
SGA_v2.0_scaffold4G02188 Striga asiatica HOM05D003707 ORTHO05D004309 1.2e-51 207.6 284 42.6
Sp1g13060 Schrenkiella parvula HOM05D003707 ORTHO05D004309 3.6e-51 206.1 260 45.8
Peaxi162Scf00139g00014 Petunia axillaris HOM05D003707 ORTHO05D004309 8.0e-51 204.9 292 42.5
Hund16884 Selenicereus undatus HOM05D003707 ORTHO05D004309 1.0e-50 204.5 277 41.9
BraA03t12047Z Brassica rapa HOM05D003707 ORTHO05D004309 2.3e-50 203.4 294 41.8
BcaB02g06540 Brassica carinata HOM05D003707 ORTHO05D004309 3.0e-50 203.0 260 45.4
Thhalv10008342m.g Eutrema salsugineum HOM05D003707 ORTHO05D004309 3.0e-50 203.0 258 45.0
MELO3C003545.2 Cucumis melo HOM05D003707 ORTHO05D004309 1.5e-49 200.7 274 42.0
unitig_8.g4846 Utricularia gibba HOM05D003707 ORTHO05D004309 9.8e-49 198.0 271 41.3
C05p12640 Brassica napus HOM05D003707 ORTHO05D004309 1.3e-48 197.6 267 42.7
AL6G41440 Arabidopsis lyrata HOM05D003707 ORTHO05D004309 2.2e-48 196.8 260 44.6
Nn4g24800 Nelumbo nucifera HOM05D003707 ORTHO05D004309 6.3e-48 195.3 334 37.4
unitig_578.g16186 Utricularia gibba HOM05D003707 ORTHO05D004309 1.1e-47 194.5 299 39.1
AT4G09060 Arabidopsis thaliana HOM05D003707 ORTHO05D004309 2.4e-47 193.4 260 44.2
A03p28420 Brassica napus HOM05D003707 ORTHO05D004309 2.4e-47 193.4 271 43.2
C03p34360 Brassica napus HOM05D003707 ORTHO05D004309 5.4e-47 192.2 263 43.7
BraA06t24253Z Brassica rapa HOM05D003707 ORTHO05D004309 1.2e-46 191.0 260 43.1
Carub.0001s1444 Capsella rubella HOM05D003707 ORTHO05D004309 2.0e-46 190.3 262 42.4
BolC3t15746H Brassica oleracea HOM05D003707 ORTHO05D004309 4.6e-46 189.1 293 40.3
CSS0014867 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 1.0e-45 188.0 275 40.0
BcaC01g04732 Brassica carinata HOM05D003707 ORTHO05D004309 1.7e-45 187.2 264 43.2
AT1G14680 Arabidopsis thaliana HOM05D003707 ORTHO05D004309 2.3e-45 186.8 262 41.6
ClCG11G014370 Citrullus lanatus HOM05D003707 ORTHO05D004309 2.9e-45 186.4 283 40.6
CSS0001361 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 3.9e-45 186.0 275 40.4
A06p10740 Brassica napus HOM05D003707 ORTHO05D004309 5.0e-45 185.7 260 42.3
MD08G1189700 Malus domestica HOM05D003707 ORTHO05D004309 6.6e-45 185.3 193 53.9
Carub.0006s2764 Capsella rubella HOM05D003707 ORTHO05D004309 8.6e-45 184.9 260 42.3
CARHR015180 Cardamine hirsuta HOM05D003707 ORTHO05D004309 1.9e-44 183.7 264 41.7
AL1G26650 Arabidopsis lyrata HOM05D003707 ORTHO05D004309 4.3e-44 182.6 262 40.5
BcaC05g25387 Brassica carinata HOM05D003707 ORTHO05D004309 3.6e-43 179.5 267 40.8
Dinv07080 Davidia involucrata HOM05D003707 ORTHO05D004309 3.6e-43 179.5 284 39.1
MSTRG.24439 Avicennia marina HOM05D003707 ORTHO05D004309 1.4e-42 177.6 223 48.4
A09p29580 Brassica napus HOM05D003707 ORTHO05D004309 7.5e-41 171.8 255 40.8
BraA09t38526Z Brassica rapa HOM05D003707 ORTHO05D004309 7.5e-41 171.8 255 40.8
Aqoxy3G04171 Aquilegia oxysepala HOM05D003707 ORTHO05D004309 2.7e-38 163.3 325 34.8
Hund26994 Selenicereus undatus HOM05D003707 ORTHO05D004309 2.5e-36 156.8 276 35.5
BcaB01g01380 Brassica carinata HOM05D003707 ORTHO05D004309 1.2e-35 154.5 260 39.2
AUR62027820 Chenopodium quinoa HOM05D003707 ORTHO05D004309 2.8e-35 153.3 210 41.9
COL.COLO4_11998 Corchorus olitorius HOM05D003707 ORTHO05D004309 2.3e-34 150.2 273 36.3
Oeu029729.1 Olea europaea HOM05D003707 ORTHO05D004309 2.3e-34 150.2 148 52.0
HanXRQChr17g0556331 Helianthus annuus HOM05D003707 ORTHO05D004309 3.1e-34 149.8 205 40.5
AUR62018979 Chenopodium quinoa HOM05D003707 ORTHO05D004309 5.2e-34 149.1 209 41.6
RcHm_v2.0_Chr3g0481851 Rosa chinensis HOM05D003707 ORTHO05D004309 5.8e-33 145.6 146 50.7
CANSAT25G0959 Cannabis sativa HOM05D003707 ORTHO05D004309 3.2e-31 139.8 259 35.5
MBI03_g38469_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 6.0e-30 135.6 324 30.2
MBI06_g46882_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 7.8e-30 135.2 153 43.8
MBI06_g47948_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 1.0e-29 134.8 153 43.8
Duzib114G0708 Durio zibethinus HOM05D003707 ORTHO05D004309 1.7e-29 134.0 152 48.0
Aqoxy5G03114 Aquilegia oxysepala HOM05D003707 ORTHO05D004309 6.6e-29 132.1 137 50.4
ClCG08G011330 Citrullus lanatus HOM05D003707 ORTHO05D004309 8.6e-29 131.7 246 34.1
BolC5t30008H Brassica oleracea HOM05D000624 ORTHO05D000495 3.3e-28 129.8 243 36.6
RcHm_v2.0_Chr5g0049351 Rosa chinensis HOM05D003707 ORTHO05D004309 1.6e-27 127.5 151 47.0
BcaC07g41551 Brassica carinata HOM05D003707 ORTHO05D032288 2.1e-27 127.1 257 35.4
ATR0618G286 Amborella trichopoda HOM05D003707 ORTHO05D004309 1.8e-26 124.0 311 29.9
MD08G1190200 Malus domestica HOM05D003707 ORTHO05D004309 1.8e-26 124.0 204 39.7
MBI06_g34539_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 2.2e-24 117.1 224 33.9
Sc23g0000420 Simmondsia chinensis HOM05D003707 ORTHO05D004309 2.2e-24 117.1 208 37.5
RcHm_v2.0_Chr7g0238301 Rosa chinensis HOM05D003707 ORTHO05D004309 8.4e-24 115.2 130 46.9
CDE02G0255 Ceratophyllum demersum HOM05D003707 ORTHO05D004309 1.9e-23 114.0 143 42.0
Oeu029730.1 Olea europaea HOM05D003707 ORTHO05D004309 7.1e-23 112.1 137 47.4
Medtr5g064800 Medicago truncatula HOM05D009584 ORTHO05D011650 9.2e-23 111.7 171 43.9
MBI03_g47917_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 3.5e-22 109.8 334 25.7
HPP92_025845 Vanilla planifolia HOM05D003707 ORTHO05D004309 2.3e-21 107.1 259 30.5
RcHm_v2.0_Chr5g0045621 Rosa chinensis HOM05D003707 ORTHO05D004309 6.6e-21 105.5 192 38.0
C08p45530 Brassica napus HOM05D000624 ORTHO05D000495 5.6e-20 102.4 183 37.2
BolC8t52105H Brassica oleracea HOM05D000624 ORTHO05D000495 5.6e-20 102.4 183 37.2
Cpa.g.sc36.189 Carica papaya HOM05D003707 ORTHO05D004309 5.6e-20 102.4 245 32.2
Hma1.2p1_0526F.1_g172810 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 8.1e-19 98.6 131 44.3
EL10Ac4g09478 Beta vulgaris HOM05D029458 ORTHO05D004309 8.4e-16 88.6 82 51.2
Duzib116G0740 Durio zibethinus HOM05D003707 ORTHO05D004309 2.1e-14 84.0 68 64.7
CDE05G1426 Ceratophyllum demersum HOM05D003707 ORTHO05D004309 7.8e-14 82.0 214 31.8
Actinidia33120 Actinidia chinensis HOM05D003707 ORTHO05D004309 2.3e-13 80.5 135 35.6
RcHm_v2.0_Chr5g0040961 Rosa chinensis HOM05D003707 ORTHO05D004309 3.9e-13 79.7 79 58.2
RcHm_v2.0_Chr3g0481861 Rosa chinensis HOM05D003707 ORTHO05D004309 8.7e-13 78.6 79 58.2
RcHm_v2.0_Chr5g0045611 Rosa chinensis HOM05D003707 ORTHO05D004309 8.7e-13 78.6 79 57.0
Zm00001eb259540 Zea mays HOM05D003707 ORTHO05D004309 9.6e-12 75.1 261 27.2
MELO3C030322.2 Cucumis melo HOM05D003707 ORTHO05D004309 1.3e-11 74.7 192 30.7
Haze_21792 Corylus avellana HOM05D003707 ORTHO05D004309 2.1e-11 73.9 84 45.2
C09p37650 Brassica napus HOM05D003707 ORTHO05D004309 6.2e-11 72.4 178 33.1
BolC9t56595H Brassica oleracea HOM05D003707 ORTHO05D004309 6.2e-11 72.4 178 33.1
BcaC04g20946 Brassica carinata HOM05D003707 ORTHO05D004309 2.6e-09 67.0 161 33.5
Hma1.2p1_0526F.1_g172800 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 3.8e-08 63.2 48 62.5
RcHm_v2.0_Chr5g0044811 Rosa chinensis HOM05D003707 ORTHO05D004309 6.4e-08 62.4 61 47.5
CsaV3_2G029910 Cucumis sativus L. HOM05D003707 ORTHO05D004309 9.3e-07 58.5 118 35.6


User provided reference genes

Program Settings