Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.04G095200 Glycine max HOM05D007397 ORTHO05D009336 1.3e-97 359.8 189 100.0
Glyma.06G097000 Glycine max HOM05D007397 ORTHO05D009336 7.2e-88 327.4 190 92.6
Phvul.009G036400 Phaseolus vulgaris HOM05D007397 ORTHO05D009336 3.7e-76 288.5 189 81.0
VMungo1309G1572 Vigna mungo HOM05D007397 ORTHO05D009336 8.3e-76 287.3 189 82.0
Medtr1g115740 Medicago truncatula HOM05D007397 ORTHO05D009336 2.1e-63 246.1 193 71.5
Ca_11323_v3 Cicer arietinum L. HOM05D007397 ORTHO05D009336 1.2e-61 240.4 192 70.3
Haze_16973 Corylus avellana HOM05D007397 ORTHO05D009336 1.3e-60 236.9 202 65.3
Cfa001558 Carpinus fangiana HOM05D007397 ORTHO05D009336 1.2e-58 230.3 189 66.7
Lj5g0010768 Lotus japonicus HOM05D007397 ORTHO05D009336 6.0e-58 228.0 195 68.7
CiPaw.01G279900 Carya illinoinensis HOM05D007397 ORTHO05D009336 7.8e-58 227.6 192 64.1
Psat6g239080 Pisum sativum HOM05D007397 ORTHO05D009336 7.3e-56 221.1 195 66.2
TPR.G10388 Trifolium pratense HOM05D007397 ORTHO05D009336 2.8e-55 219.2 190 65.8
Lalb_Chr06g0164111 Lupinus albus HOM05D007397 ORTHO05D009336 3.6e-55 218.8 183 67.8
FAN03G3257 Fragaria x ananassa HOM05D007397 ORTHO05D009336 1.2e-53 213.8 192 60.9
ClCG09G020320 Citrullus lanatus HOM05D007397 ORTHO05D009336 2.0e-53 213.0 183 64.5
Cpa.g.sc1.304 Carica papaya HOM05D007397 ORTHO05D009336 3.2e-51 205.7 187 63.6
FAN01G1406 Fragaria x ananassa HOM05D007397 ORTHO05D009336 3.2e-51 205.7 192 58.9
MELO3C025487.2 Cucumis melo HOM05D007397 ORTHO05D009336 5.4e-51 204.9 186 62.4
FAN01G1537 Fragaria x ananassa HOM05D007397 ORTHO05D009336 1.2e-50 203.8 192 58.3
GSVIVG01032626001 Vitis vinifera HOM05D007397 ORTHO05D009336 2.1e-50 203.0 200 57.5
SGA_v2.0_scaffold165G38243 Striga asiatica HOM05D007397 ORTHO05D009336 7.8e-50 201.1 185 58.4
CANSAT64G2695 Cannabis sativa HOM05D007397 ORTHO05D009336 1.0e-49 200.7 189 58.2
Carub.0003s1170 Capsella rubella HOM05D007397 ORTHO05D009336 1.7e-49 199.9 186 60.2
Cc02_g08640 Coffea canephora HOM05D007397 ORTHO05D009336 2.3e-49 199.5 201 59.2
CSS0023256 Camellia sinensis var. sinensis HOM05D007397 ORTHO05D009336 3.0e-49 199.1 190 60.5
Sp3g10540 Schrenkiella parvula HOM05D007397 ORTHO05D009336 3.0e-49 199.1 185 58.4
MSTRG.7898 Avicennia marina HOM05D007397 ORTHO05D009336 3.9e-49 198.7 186 57.5
Hma1.2p1_0348F.1_g131665 Hydrangea macrophylla HOM05D007397 ORTHO05D009336 3.9e-49 198.7 192 57.8
Hma1.2p1_0348F.1_g131670 Hydrangea macrophylla HOM05D007397 ORTHO05D009336 3.9e-49 198.7 192 57.8
PGSC0003DMG400011470 Solanum tuberosum HOM05D007397 ORTHO05D009336 8.6e-49 197.6 189 60.3
Oeu044824.1 Olea europaea HOM05D007397 ORTHO05D009336 1.1e-48 197.2 193 57.5
Thhalv10021616m.g Eutrema salsugineum HOM05D007397 ORTHO05D009336 1.5e-48 196.8 182 58.8
TAR320G0002 Trochodendron aralioides HOM05D007397 ORTHO05D009336 1.5e-48 196.8 190 59.5
Aa31sc153G60 Aethionema arabicum HOM05D007397 ORTHO05D009336 2.5e-48 196.1 185 61.6
BraA05t22502Z Brassica rapa HOM05D007397 ORTHO05D009336 3.3e-48 195.7 184 57.1
AL3G23990 Arabidopsis lyrata HOM05D007397 ORTHO05D009336 4.3e-48 195.3 186 58.6
A05p37050 Brassica napus HOM05D007397 ORTHO05D009336 4.3e-48 195.3 182 56.0
Actinidia38224 Actinidia chinensis HOM05D007397 ORTHO05D009336 5.6e-48 194.9 183 59.6
THA.LOC104827311 Tarenaya hassleriana HOM05D007397 ORTHO05D009336 5.6e-48 194.9 186 59.1
Aqoxy5G01687 Aquilegia oxysepala HOM05D007397 ORTHO05D009336 7.3e-48 194.5 191 59.2
AT3G12345 Arabidopsis thaliana HOM05D007397 ORTHO05D009336 9.5e-48 194.1 189 55.0
TWI38G1005 Tripterygium wilfordii HOM05D007397 ORTHO05D009336 9.5e-48 194.1 193 60.6
C05p55480 Brassica napus HOM05D007397 ORTHO05D009336 1.2e-47 193.7 182 55.5
BolC5t34214H Brassica oleracea HOM05D007397 ORTHO05D009336 1.2e-47 193.7 182 55.5
MBI05_g32638_MAGBIO Magnolia biondii HOM05D007397 ORTHO05D009336 1.2e-47 193.7 156 64.7
BcaC05g29269 Brassica carinata HOM05D007397 ORTHO05D009336 1.6e-47 193.4 182 56.6
PGR142G1402 Punica granatum HOM05D007397 ORTHO05D009336 1.6e-47 193.4 189 59.8
Migut.L01413 Erythranthe guttata HOM05D007397 ORTHO05D009336 3.6e-47 192.2 168 60.1
MD07G1184800 Malus domestica HOM05D007397 ORTHO05D009336 3.6e-47 192.2 188 58.0
EL10Ac2g03499 Beta vulgaris HOM05D007397 ORTHO05D009336 4.7e-47 191.8 155 64.5
CARHR086880 Cardamine hirsuta HOM05D007397 ORTHO05D009336 4.7e-47 191.8 183 57.4
Potri.010G213600 Populus trichocarpa HOM05D007397 ORTHO05D009336 6.2e-47 191.4 187 59.4
CsaV3_5G026110 Cucumis sativus L. HOM05D007397 ORTHO05D009336 1.1e-46 190.7 178 60.1
THA.LOC104809886 Tarenaya hassleriana HOM05D007397 ORTHO05D009336 1.4e-46 190.3 185 56.8
QL08p057549 Quercus lobata HOM05D007397 ORTHO05D009336 5.2e-46 188.3 194 55.2
Sopen04g005370 Solanum pennellii HOM05D007397 ORTHO05D009336 5.2e-46 188.3 191 57.1
RcHm_v2.0_Chr1g0365021 Rosa chinensis HOM05D007397 ORTHO05D009336 6.8e-46 188.0 190 57.9
Sabra08G0033900 Salix brachista HOM05D007397 ORTHO05D009336 6.8e-46 188.0 194 57.7
Rhsim09G0155900 Rhododendron simsii HOM05D007397 ORTHO05D009336 1.5e-45 186.8 183 55.7
AUR62042666 Chenopodium quinoa HOM05D007397 ORTHO05D009336 2.0e-45 186.4 179 57.5
Solyc04g010190.1 Solanum lycopersicum HOM05D007397 ORTHO05D009336 1.3e-44 183.7 189 56.1
Thecc.10G062300 Theobroma cacao HOM05D007397 ORTHO05D009336 1.7e-44 183.3 202 55.4
Lj1P929T40 Lonicera japonica HOM05D007397 ORTHO05D009336 2.2e-44 183.0 146 62.3
Sed0011140 Sechium edule HOM05D007397 ORTHO05D009336 2.9e-44 182.6 191 56.5
Gohir.D10G218000 Gossypium hirsutum HOM05D007397 ORTHO05D009336 6.4e-44 181.4 197 57.4
Potri.008G047800 Populus trichocarpa HOM05D007397 ORTHO05D009336 6.4e-44 181.4 196 56.1
Prupe.2G224700 Prunus persica HOM05D007397 ORTHO05D009336 1.1e-43 180.6 188 55.9
Nn2g12828 Nelumbo nucifera HOM05D007397 ORTHO05D009336 1.4e-43 180.3 199 53.3
Lsat_1_v5_gn_2_115220 Lactuca sativa HOM05D005234 ORTHO05D006583 1.9e-43 179.9 174 58.6
Dinv25942 Davidia involucrata HOM05D007397 ORTHO05D009336 4.2e-43 178.7 176 56.8
HanXRQChr14g0460741 Helianthus annuus HOM05D007397 ORTHO05D009336 9.2e-43 177.6 178 57.3
SalBow2G2387 Salvia bowleyana HOM05D007397 ORTHO05D009336 9.2e-43 177.6 179 55.9
unitig_22.g6935 Utricularia gibba HOM05D007397 ORTHO05D009336 2.1e-42 176.4 182 54.4
Sc06g0001870 Simmondsia chinensis HOM05D007397 ORTHO05D009336 2.7e-42 176.0 178 53.9
BcaB04g21083 Brassica carinata HOM05D007397 ORTHO05D009336 4.6e-42 175.3 197 51.3
BcaB04g21085 Brassica carinata HOM05D007397 ORTHO05D009336 4.6e-42 175.3 197 51.3
PSO384G5114 Papaver somniferum HOM05D007397 ORTHO05D009336 4.6e-42 175.3 202 54.5
CAN.G1557.1 Capsicum annuum HOM05D007397 ORTHO05D009336 7.8e-42 174.5 116 75.0
FAN10G1155 Fragaria x ananassa HOM05D007397 ORTHO05D009336 7.8e-42 174.5 180 56.7
Gorai.011G244600 Gossypium raimondii HOM05D007397 ORTHO05D009336 1.7e-41 173.3 197 55.3
DCAR_015250 Daucus carota HOM05D007397 ORTHO05D009336 1.5e-40 170.2 128 66.4
Gohir.A10G209700 Gossypium hirsutum HOM05D007397 ORTHO05D009336 1.5e-40 170.2 134 67.2
ATR0681G332 Amborella trichopoda HOM05D007397 ORTHO05D009336 2.5e-40 169.5 183 51.4
Atru.chr12.591 Acer truncatum HOM05D007397 ORTHO05D009336 4.7e-39 165.2 148 59.5
PSO339G5749 Papaver somniferum HOM05D007397 ORTHO05D009336 8.1e-39 164.5 198 51.5
CDE02G3908 Ceratophyllum demersum HOM05D001333 ORTHO05D001208 6.9e-38 161.4 155 49.7
Manes.10G039600 Manihot esculenta HOM05D007397 ORTHO05D009336 1.5e-37 160.2 93 81.7
AUR62025539 Chenopodium quinoa HOM05D007397 ORTHO05D009336 1.7e-36 156.8 154 57.1
MBI05_g30757_MAGBIO Magnolia biondii HOM05D007397 ORTHO05D009336 1.7e-36 156.8 153 58.2
HPP92_025097 Vanilla planifolia HOM05D007397 ORTHO05D009336 2.9e-36 156.0 185 45.9
COL.COLO4_37769 Corchorus olitorius HOM05D007397 ORTHO05D009336 6.4e-36 154.8 134 63.4
Ciclev10034008m.g Citrus clementina HOM05D007397 ORTHO05D009336 8.4e-36 154.5 89 80.9
Duzib106G0993 Durio zibethinus HOM05D007397 ORTHO05D009336 4.2e-35 152.1 117 69.2
SEGI_38306 Sequoiadendron giganteum HOM05D007397 ORTHO05D009336 9.6e-32 141.0 132 56.8
Peaxi162Scf00135g00025 Petunia axillaris HOM05D007397 ORTHO05D009336 3.6e-31 139.0 88 76.1
Nitab4.5_0007221g0040 Nicotiana tabacum HOM05D007397 ORTHO05D009336 4.8e-31 138.7 189 46.0
ECA238G2043 Erigeron canadensis HOM05D005234 ORTHO05D006583 6.9e-30 134.8 133 57.1
Cfa009156 Carpinus fangiana HOM05D007397 ORTHO05D009336 1.5e-29 133.7 135 60.0
Mapoly0043s0078 Marchantia polymorpha HOM05D007397 ORTHO05D009336 1.1e-27 127.5 134 47.8
Os06g0484500 Oryza sativa ssp. japonica HOM05D007397 ORTHO05D009336 4.6e-26 122.1 150 50.0
SMO229G0021 Selaginella moellendorffii HOM05D007397 ORTHO05D009336 1.3e-25 120.6 128 49.2
Zm00001eb397310 Zea mays HOM05D007397 ORTHO05D009336 7.4e-24 114.8 183 42.6
Nitab4.5_0006737g0020 Nicotiana tabacum HOM05D007397 ORTHO05D009336 1.2e-21 107.5 154 47.4
AagrBONN_evm.TU.Sc2ySwM_368.51 Anthoceros agrestis HOM05D007397 ORTHO05D009336 3.9e-17 92.4 70 58.6
C03p57580 Brassica napus HOM05D007397 ORTHO05D009336 1.1e-16 90.9 114 44.7
Duzib114G0919 Durio zibethinus HOM05D007397 ORTHO05D009336 1.5e-16 90.5 131 45.8
BcaC03g17725 Brassica carinata HOM05D007397 ORTHO05D009336 2.8e-15 86.3 108 45.4
Lsat_1_v5_gn_4_144040 Lactuca sativa HOM05D018034 ORTHO05D019256 2.2e-07 60.1 70 51.4
Lsat_1_v5_gn_5_57621 Lactuca sativa HOM05D018034 ORTHO05D019256 2.2e-07 60.1 70 51.4
Lsat_1_v5_gn_7_115640 Lactuca sativa HOM05D018034 ORTHO05D006583 6.3e-07 58.5 106 39.6
Lsat_1_v5_gn_5_146901 Lactuca sativa HOM05D018034 ORTHO05D019256 2.4e-06 56.6 70 50.0


User provided reference genes

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