Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.04G090900 Glycine max HOM05D006739 ORTHO05D008402 7.7e-83 312.4 240 100.0
Glyma.06G092600 Glycine max HOM05D006739 ORTHO05D008402 5.0e-74 283.1 241 93.8
VMungo1309G0048 Vigna mungo HOM05D006739 ORTHO05D008402 4.7e-64 250.0 240 85.8
Phvul.009G145100 Phaseolus vulgaris HOM05D006739 ORTHO05D008402 6.3e-61 239.6 240 85.4
Lj1g0027306 Lotus japonicus HOM05D006739 ORTHO05D008402 1.2e-35 155.6 249 69.5
QL12p039876 Quercus lobata HOM05D006739 ORTHO05D008402 1.2e-27 129.0 243 60.9
Atru.chr13.953 Acer truncatum HOM05D006739 ORTHO05D008402 6.0e-27 126.7 158 48.1
TAR628G0153 Trochodendron aralioides HOM05D006739 ORTHO05D008402 2.5e-25 121.3 176 42.6
RcHm_v2.0_Chr7g0233521 Rosa chinensis HOM05D006739 ORTHO05D008402 3.3e-25 120.9 252 58.7
Cfa013823 Carpinus fangiana HOM05D006739 ORTHO05D008402 2.8e-24 117.9 177 45.8
CiPaw.08G057600 Carya illinoinensis HOM05D006739 ORTHO05D008402 3.6e-24 117.5 105 62.9
MD08G1206600 Malus domestica HOM05D006739 ORTHO05D008402 2.3e-23 114.8 100 60.0
Ciclev10000605m.g Citrus clementina HOM05D006739 ORTHO05D008402 3.1e-23 114.4 265 54.7
Eucgr.F02164 Eucalyptus grandis HOM05D006739 ORTHO05D008402 3.1e-23 114.4 176 45.5
FvH4_5g34030 Fragaria vesca HOM05D006739 ORTHO05D008402 6.8e-23 113.2 168 44.0
FAN08G0673 Fragaria x ananassa HOM05D006739 ORTHO05D008402 6.8e-23 113.2 168 44.6
FAN18G3137 Fragaria x ananassa HOM05D006739 ORTHO05D008402 6.8e-23 113.2 168 44.0
Dinv44882 Davidia involucrata HOM05D006739 ORTHO05D008402 1.2e-22 112.5 255 59.6
Migut.N00013 Erythranthe guttata HOM05D006739 ORTHO05D008402 1.2e-22 112.5 244 60.7
MD15G1390100 Malus domestica HOM05D006739 ORTHO05D008402 1.2e-22 112.5 100 59.0
Haze_22495 Corylus avellana HOM05D006739 ORTHO05D008402 1.5e-22 112.1 166 47.0
Thecc.08G075400 Theobroma cacao HOM05D006739 ORTHO05D008402 7.6e-22 109.8 239 63.2
CSS0033703 Camellia sinensis var. sinensis HOM05D006739 ORTHO05D008402 1.7e-21 108.6 188 74.5
Sc15g0003370 Simmondsia chinensis HOM05D006739 ORTHO05D008402 1.7e-21 108.6 149 47.0
TWI56G0071 Tripterygium wilfordii HOM05D006739 ORTHO05D008402 2.9e-21 107.8 173 43.4
TAR152G0001 Trochodendron aralioides HOM05D006739 ORTHO05D008402 2.9e-21 107.8 217 58.1
Nitab4.5_0002667g0050 Nicotiana tabacum HOM05D006739 ORTHO05D008402 3.7e-21 107.5 246 60.6
Manes.05G187600 Manihot esculenta HOM05D006739 ORTHO05D008402 4.9e-21 107.1 156 44.2
arahy.Tifrunner.gnm1.ann1.CH37P4 Arachis hypogaea HOM05D006739 ORTHO05D008402 6.4e-21 106.7 171 45.0
COL.COLO4_35303 Corchorus olitorius HOM05D006739 ORTHO05D008402 8.4e-21 106.3 146 44.5
Nitab4.5_0002667g0060 Nicotiana tabacum HOM05D006739 ORTHO05D008402 1.4e-20 105.5 245 57.1
arahy.Tifrunner.gnm1.ann1.M3C1JT Arachis hypogaea HOM05D006739 ORTHO05D008402 2.4e-20 104.8 171 44.4
Prupe.1G539000 Prunus persica HOM05D006739 ORTHO05D008402 5.4e-20 103.6 176 43.8
Hma1.2p1_0010F.1_g006410 Hydrangea macrophylla HOM05D006739 ORTHO05D008402 7.1e-20 103.2 258 55.4
Phvul.008G184000 Phaseolus vulgaris HOM05D006739 ORTHO05D008402 7.1e-20 103.2 107 58.9
Glyma.14G184200 Glycine max HOM05D006739 ORTHO05D008402 1.6e-19 102.1 109 58.7
CSS0036090 Camellia sinensis var. sinensis HOM05D006739 ORTHO05D008402 3.5e-19 100.9 100 56.0
EL10Ac1g00466 Beta vulgaris HOM05D006739 ORTHO05D008402 4.6e-19 100.5 257 57.2
ECA247G1663 Erigeron canadensis HOM05D006739 ORTHO05D008402 4.6e-19 100.5 182 68.1
MBI16_g36544_MAGBIO Magnolia biondii HOM05D006739 ORTHO05D008402 4.6e-19 100.5 193 69.4
Lsat_1_v5_gn_1_781 Lactuca sativa HOM05D006739 ORTHO05D008402 7.8e-19 99.8 184 71.7
Sabra02G0086200 Salix brachista HOM05D006739 ORTHO05D008402 1.0e-18 99.4 156 43.6
AT1G09900 Arabidopsis thaliana HOM05D006739 ORTHO05D008402 1.3e-18 99.0 103 53.4
Sed0004950 Sechium edule HOM05D006739 ORTHO05D008402 1.3e-18 99.0 244 61.9
THA.LOC104816789 Tarenaya hassleriana HOM05D006739 ORTHO05D008402 1.3e-18 99.0 157 44.6
VMungo0647G0534 Vigna mungo HOM05D006739 ORTHO05D008402 1.7e-18 98.6 162 45.7
Potri.002G109500 Populus trichocarpa HOM05D006739 ORTHO05D008402 3.0e-18 97.8 156 44.2
ClCG08G011830 Citrullus lanatus HOM05D006739 ORTHO05D008402 3.9e-18 97.4 238 61.3
BcaC05g24834 Brassica carinata HOM05D006739 ORTHO05D008402 8.6e-18 96.3 200 67.5
AL1G20500 Arabidopsis lyrata HOM05D006739 ORTHO05D008402 1.5e-17 95.5 103 52.4
Duzib093G0111 Durio zibethinus HOM05D006739 ORTHO05D008402 1.5e-17 95.5 242 56.2
BraA06t23875Z Brassica rapa HOM05D006739 ORTHO05D008402 1.9e-17 95.1 101 56.4
Ca_15539_v3 Cicer arietinum L. HOM05D006739 ORTHO05D008402 3.3e-17 94.4 241 60.2
Aqoxy5G01872 Aquilegia oxysepala HOM05D006739 ORTHO05D008402 4.3e-17 94.0 249 55.0
BolC5t29554H Brassica oleracea HOM05D006739 ORTHO05D008402 4.3e-17 94.0 118 49.2
Carub.0001s0928 Capsella rubella HOM05D006739 ORTHO05D008402 4.3e-17 94.0 104 51.9
Psat5g018720 Pisum sativum HOM05D006739 ORTHO05D008402 4.3e-17 94.0 149 43.0
Aa31LG1G4990 Aethionema arabicum HOM05D006739 ORTHO05D008402 7.3e-17 93.2 191 70.2
MSTRG.24837 Avicennia marina HOM05D006739 ORTHO05D008402 7.3e-17 93.2 102 51.0
C05p08020 Brassica napus HOM05D006739 ORTHO05D008402 7.3e-17 93.2 101 55.4
CARHR009960 Cardamine hirsuta HOM05D006739 ORTHO05D008402 9.6e-17 92.8 108 52.8
Glyma.02G216900 Glycine max HOM05D006739 ORTHO05D008402 1.2e-16 92.4 109 54.1
Sp1g08530 Schrenkiella parvula HOM05D006739 ORTHO05D008402 1.2e-16 92.4 103 51.5
A06p06610 Brassica napus HOM05D006739 ORTHO05D008402 1.6e-16 92.0 140 44.3
TAR381G0861 Trochodendron aralioides HOM05D006739 ORTHO05D008402 6.2e-16 90.1 107 48.6
Gorai.010G032500 Gossypium raimondii HOM05D006739 ORTHO05D008402 8.1e-16 89.7 233 59.7
HanXRQChr11g0324241 Helianthus annuus HOM05D006739 ORTHO05D008402 8.1e-16 89.7 55 69.1
Oeu020282.1 Olea europaea HOM05D006739 ORTHO05D008402 1.1e-15 89.4 151 75.5
Ca_05489_v3 Cicer arietinum L. HOM05D006739 ORTHO05D008402 1.4e-15 89.0 122 46.7
Ca_29619_v3 Cicer arietinum L. HOM05D006739 ORTHO05D008402 1.4e-15 89.0 122 46.7
Duzib116G0618 Durio zibethinus HOM05D006739 ORTHO05D008402 1.4e-15 89.0 148 39.9
Gohir.D06G029600 Gossypium hirsutum HOM05D006739 ORTHO05D008402 1.4e-15 89.0 195 68.2
Gohir.A06G030375 Gossypium hirsutum HOM05D006739 ORTHO05D008402 1.8e-15 88.6 233 59.2
Phvul.008G183900 Phaseolus vulgaris HOM05D006739 ORTHO05D008402 1.8e-15 88.6 109 54.1
PSO700G0042 Papaver somniferum HOM05D006739 ORTHO05D008402 2.4e-15 88.2 193 68.4
PSO761G0270 Papaver somniferum HOM05D006739 ORTHO05D008402 2.4e-15 88.2 171 74.3
VMungo0647G1229 Vigna mungo HOM05D006739 ORTHO05D008402 2.4e-15 88.2 121 50.4
Peaxi162Scf01212g00003 Petunia axillaris HOM05D006739 ORTHO05D008402 3.1e-15 87.8 95 49.5
Ah.05g171720 Amaranthus hybridus HOM05D006739 ORTHO05D008402 6.8e-15 86.7 259 53.3
Sopen06g003030 Solanum pennellii HOM05D006739 ORTHO05D008402 6.8e-15 86.7 169 73.4
DCAR_019326 Daucus carota HOM05D006739 ORTHO05D008402 8.9e-15 86.3 100 45.0
PGSC0003DMG400014713 Solanum tuberosum HOM05D006739 ORTHO05D008402 8.9e-15 86.3 169 73.4
PGSC0003DMG400027357 Solanum tuberosum HOM05D006739 ORTHO05D008402 8.9e-15 86.3 169 73.4
AUR62019126 Chenopodium quinoa HOM05D006739 ORTHO05D008402 1.2e-14 85.9 149 77.9
MELO3C011106.2 Cucumis melo HOM05D006739 ORTHO05D008402 2.0e-14 85.1 262 55.3
Rhsim07G0214200 Rhododendron simsii HOM05D006739 ORTHO05D008402 2.6e-14 84.7 167 41.9
SalBow5G4649 Salvia bowleyana HOM05D006739 ORTHO05D008402 2.2e-13 81.6 145 80.0
Actinidia10267 Actinidia chinensis HOM05D006739 ORTHO05D008402 3.8e-13 80.9 178 48.9
Glyma.14G184300 Glycine max HOM05D006739 ORTHO05D008402 3.8e-13 80.9 148 41.2
AUR62014385 Chenopodium quinoa HOM05D006739 ORTHO05D008402 6.4e-13 80.1 95 46.3
CsaV3_2G030450 Cucumis sativus L. HOM05D006739 ORTHO05D008402 2.4e-12 78.2 132 85.6
CDE07G2071 Ceratophyllum demersum HOM05D006739 ORTHO05D008402 7.1e-12 76.6 126 41.3
Hund26854 Selenicereus undatus HOM05D006739 ORTHO05D008402 9.3e-12 76.3 139 38.8
Hund26833 Selenicereus undatus HOM05D006739 ORTHO05D008402 1.6e-11 75.5 95 47.4
PGR042G0142 Punica granatum HOM05D006739 ORTHO05D008402 2.7e-11 74.7 61 62.3
CAN.G941.26 Capsicum annuum HOM05D006739 ORTHO05D008402 7.8e-11 73.2 131 86.3
CDE04G0064 Ceratophyllum demersum HOM05D006739 ORTHO05D008402 7.8e-11 73.2 98 45.9
Hund26842 Selenicereus undatus HOM05D006739 ORTHO05D008402 7.8e-11 73.2 96 44.8
vmacro04630 Vaccinium macrocarpon HOM05D006739 ORTHO05D008402 1.0e-10 72.8 168 36.3
Hund26853 Selenicereus undatus HOM05D006739 ORTHO05D008402 1.7e-10 72.0 96 43.8
TPR.G12357 Trifolium pratense HOM05D006739 ORTHO05D008402 1.7e-10 72.0 147 36.1
ATR0800G015 Amborella trichopoda HOM05D006739 ORTHO05D008402 3.0e-10 71.2 120 41.7
CDE06G1140 Ceratophyllum demersum HOM05D002753 ORTHO05D003097 3.0e-10 71.2 98 44.9
DCAR_012846 Daucus carota HOM05D006739 ORTHO05D008402 3.0e-10 71.2 101 44.6
Hund26855 Selenicereus undatus HOM05D006739 ORTHO05D008402 6.6e-10 70.1 102 43.1
Actinidia19611 Actinidia chinensis HOM05D006739 ORTHO05D008402 8.7e-10 69.7 149 38.3
TPR.G15758 Trifolium pratense HOM05D000069 ORTHO05D001849 5.6e-09 67.0 145 33.1
CANSAT25G1844 Cannabis sativa HOM05D006739 ORTHO05D008402 1.4e-07 62.4 52 55.8
SGA_v2.0_scaffold123G33426 Striga asiatica HOM05D006739 ORTHO05D008402 2.4e-07 61.6 43 62.8


User provided reference genes

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