Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.04G089600 Glycine max HOM05D005492 ORTHO05D006911 8.7e-104 380.2 176 100.0
Glyma.06G091400 Glycine max HOM05D005492 ORTHO05D006911 2.8e-102 375.2 176 98.9
VMungo1309G2191 Vigna mungo HOM05D005492 ORTHO05D006911 5.3e-101 370.9 176 98.3
arahy.Tifrunner.gnm1.ann1.7IN1UY Arachis hypogaea HOM05D005492 ORTHO05D006911 1.2e-100 369.8 176 97.7
arahy.Tifrunner.gnm1.ann1.EMS59G Arachis hypogaea HOM05D005492 ORTHO05D006911 1.2e-100 369.8 176 97.7
MD15G1393200 Malus domestica HOM05D005492 ORTHO05D006911 6.5e-99 364.0 176 94.3
Psat5g017920 Pisum sativum HOM05D005492 ORTHO05D006911 6.5e-99 364.0 176 95.5
TWI12G1341 Tripterygium wilfordii HOM05D005492 ORTHO05D006911 6.5e-99 364.0 172 95.9
Lj1g0026792 Lotus japonicus HOM05D005492 ORTHO05D006911 8.5e-99 363.6 172 95.9
Medtr3g111110 Medicago truncatula HOM05D005492 ORTHO05D006911 8.5e-99 363.6 176 96.0
CiPaw.15G151700 Carya illinoinensis HOM05D005492 ORTHO05D006911 1.1e-98 363.2 176 94.9
CANSAT35G2015 Cannabis sativa HOM05D005492 ORTHO05D006911 1.9e-98 362.5 176 94.9
Gohir.D06G028400 Gossypium hirsutum HOM05D005492 ORTHO05D006911 2.5e-98 362.1 176 94.9
Lalb_Chr08g0242711 Lupinus albus HOM05D005492 ORTHO05D006911 2.5e-98 362.1 176 94.3
CsaV3_3G048290 Cucumis sativus L. HOM05D005492 ORTHO05D006911 3.2e-98 361.7 172 94.8
Gohir.A05G264075 Gossypium hirsutum HOM05D005492 ORTHO05D006911 3.2e-98 361.7 172 94.8
Gohir.D05G266500 Gossypium hirsutum HOM05D005492 ORTHO05D006911 3.2e-98 361.7 172 94.8
Gorai.009G278400 Gossypium raimondii HOM05D005492 ORTHO05D006911 3.2e-98 361.7 172 94.8
Ca_15548_v3 Cicer arietinum L. HOM05D005492 ORTHO05D006911 4.2e-98 361.3 176 94.9
Sabra02G0084500 Salix brachista HOM05D005492 ORTHO05D006911 4.2e-98 361.3 172 95.3
Eucgr.F00462 Eucalyptus grandis HOM05D005492 ORTHO05D006911 5.5e-98 360.9 176 94.9
Gohir.A06G029400 Gossypium hirsutum HOM05D005492 ORTHO05D006911 5.5e-98 360.9 176 94.3
Manes.18G054601 Manihot esculenta HOM05D005492 ORTHO05D006911 5.5e-98 360.9 176 93.8
QL12p040192 Quercus lobata HOM05D005492 ORTHO05D006911 5.5e-98 360.9 175 94.9
MD08G1209200 Malus domestica HOM05D005492 ORTHO05D006911 7.2e-98 360.5 172 93.6
Potri.002G107600 Populus trichocarpa HOM05D005492 ORTHO05D006911 9.4e-98 360.1 172 94.8
TWI32G1091 Tripterygium wilfordii HOM05D005492 ORTHO05D006911 9.4e-98 360.1 172 94.8
Ciclev10002666m.g Citrus clementina HOM05D005492 ORTHO05D006911 1.2e-97 359.8 172 94.2
Gorai.010G031300 Gossypium raimondii HOM05D005492 ORTHO05D006911 1.2e-97 359.8 176 94.3
Cfa020694 Carpinus fangiana HOM05D005492 ORTHO05D006911 1.6e-97 359.4 176 94.9
Haze_18999 Corylus avellana HOM05D005492 ORTHO05D006911 1.6e-97 359.4 176 94.9
RcHm_v2.0_Chr7g0232851 Rosa chinensis HOM05D005492 ORTHO05D006911 1.6e-97 359.4 172 93.6
TPR.G12370 Trifolium pratense HOM05D005492 ORTHO05D006911 1.6e-97 359.4 176 94.9
Cpa.g.sc160.3 Carica papaya HOM05D005492 ORTHO05D006911 2.7e-97 358.6 176 94.3
COL.COLO4_35339 Corchorus olitorius HOM05D005492 ORTHO05D006911 2.7e-97 358.6 176 93.8
Dinv44895 Davidia involucrata HOM05D005492 ORTHO05D006911 3.6e-97 358.2 172 94.2
Thecc.08G078100 Theobroma cacao HOM05D005492 ORTHO05D006911 3.6e-97 358.2 172 93.0
FAN04G2818 Fragaria x ananassa HOM05D005492 ORTHO05D006911 4.6e-97 357.8 172 92.4
Dinv22020 Davidia involucrata HOM05D005492 ORTHO05D006911 6.1e-97 357.5 172 94.2
Prupe.1G541400 Prunus persica HOM05D005492 ORTHO05D006911 6.1e-97 357.5 172 93.0
PGR083G0175 Punica granatum HOM05D005492 ORTHO05D006911 6.1e-97 357.5 176 93.2
vmacro04619 Vaccinium macrocarpon HOM05D005492 ORTHO05D006911 6.1e-97 357.5 172 93.0
Hma1.2p1_1548F.1_g290020 Hydrangea macrophylla HOM05D005492 ORTHO05D006911 1.0e-96 356.7 172 93.0
Duzib041G0144 Durio zibethinus HOM05D005492 ORTHO05D006911 1.8e-96 355.9 172 93.0
FAN08G0693 Fragaria x ananassa HOM05D005492 ORTHO05D006911 1.8e-96 355.9 172 92.4
FAN18G0360 Fragaria x ananassa HOM05D005492 ORTHO05D006911 1.8e-96 355.9 172 92.4
Carub.0001s2610 Capsella rubella HOM05D005492 ORTHO05D006911 3.0e-96 355.1 172 91.3
CARHR027130 Cardamine hirsuta HOM05D005492 ORTHO05D006911 3.9e-96 354.8 172 91.3
THA.LOC104800327 Tarenaya hassleriana HOM05D005492 ORTHO05D006911 3.9e-96 354.8 176 92.0
AL1G40960 Arabidopsis lyrata HOM05D005492 ORTHO05D006911 5.1e-96 354.4 172 91.3
AT1G27530 Arabidopsis thaliana HOM05D005492 ORTHO05D006911 5.1e-96 354.4 172 91.3
TAR628G0115 Trochodendron aralioides HOM05D005492 ORTHO05D006911 5.1e-96 354.4 171 93.0
MSTRG.24417 Avicennia marina HOM05D005492 ORTHO05D006911 6.7e-96 354.0 176 90.3
CAN.G723.31 Capsicum annuum HOM05D005492 ORTHO05D006911 6.7e-96 354.0 172 93.0
Duzib041G0066 Durio zibethinus HOM05D005492 ORTHO05D006911 6.7e-96 354.0 172 92.4
CSS0048416 Camellia sinensis var. sinensis HOM05D005492 ORTHO05D006911 8.8e-96 353.6 172 93.0
Actinidia10257 Actinidia chinensis HOM05D005492 ORTHO05D006911 1.1e-95 353.2 172 92.4
Actinidia19266 Actinidia chinensis HOM05D005492 ORTHO05D006911 1.1e-95 353.2 172 91.9
vmacro21373 Vaccinium macrocarpon HOM05D005492 ORTHO05D006911 1.1e-95 353.2 176 92.0
Duzib116G0911 Durio zibethinus HOM05D005492 ORTHO05D006911 1.5e-95 352.8 177 91.0
MBI16_g26726_MAGBIO Magnolia biondii HOM05D005492 ORTHO05D006911 1.5e-95 352.8 176 91.5
Thhalv10008910m.g Eutrema salsugineum HOM05D005492 ORTHO05D006911 3.3e-95 351.7 172 90.7
Nitab4.5_0000377g0170 Nicotiana tabacum HOM05D005492 ORTHO05D006911 3.3e-95 351.7 172 91.9
Nitab4.5_0005557g0040 Nicotiana tabacum HOM05D005492 ORTHO05D006911 3.3e-95 351.7 172 91.9
Aqoxy5G01947 Aquilegia oxysepala HOM05D005492 ORTHO05D006911 4.4e-95 351.3 176 92.6
Sed0023469 Sechium edule HOM05D005492 ORTHO05D006911 5.7e-95 350.9 172 91.3
Sp1g23790 Schrenkiella parvula HOM05D005492 ORTHO05D006911 7.4e-95 350.5 172 90.1
Solyc04g076890.4 Solanum lycopersicum HOM05D005492 ORTHO05D006911 7.4e-95 350.5 172 91.3
Sopen04g030660 Solanum pennellii HOM05D005492 ORTHO05D006911 7.4e-95 350.5 172 91.3
PGSC0003DMG400006380 Solanum tuberosum HOM05D005492 ORTHO05D006911 7.4e-95 350.5 172 91.3
C07p17680 Brassica napus HOM05D005492 ORTHO05D006911 9.7e-95 350.1 172 90.7
Oeu002945.1 Olea europaea HOM05D005492 ORTHO05D006911 9.7e-95 350.1 176 90.9
SGA_v2.0_scaffold28G11869 Striga asiatica HOM05D005492 ORTHO05D006911 9.7e-95 350.1 176 89.8
GSVIVG01009242001 Vitis vinifera HOM05D005492 ORTHO05D006911 1.3e-94 349.7 172 91.9
BolC3t19680H Brassica oleracea HOM05D005492 ORTHO05D006911 1.7e-94 349.4 172 90.1
Oeu026363.1 Olea europaea HOM05D005492 ORTHO05D006911 1.7e-94 349.4 176 90.9
A07p11710 Brassica napus HOM05D005492 ORTHO05D006911 2.2e-94 349.0 172 90.1
A08p26210 Brassica napus HOM05D005492 ORTHO05D006911 2.2e-94 349.0 172 90.1
BolC7t42275H Brassica oleracea HOM05D005492 ORTHO05D006911 2.2e-94 349.0 172 90.1
BraA07t28956Z Brassica rapa HOM05D005492 ORTHO05D006911 2.2e-94 349.0 172 90.1
BraA08t34572Z Brassica rapa HOM05D005492 ORTHO05D006911 2.2e-94 349.0 172 90.1
BcaC01g06944 Brassica carinata HOM05D005492 ORTHO05D006911 2.8e-94 348.6 172 89.5
PSO210G2227 Papaver somniferum HOM05D005492 ORTHO05D006911 2.8e-94 348.6 176 91.5
PSO761G0095 Papaver somniferum HOM05D005492 ORTHO05D006911 2.8e-94 348.6 176 91.5
C03p74220 Brassica napus HOM05D005492 ORTHO05D006911 3.7e-94 348.2 172 89.5
CDE04G0412 Ceratophyllum demersum HOM05D005492 ORTHO05D006911 3.7e-94 348.2 176 90.3
Cc10_g08150 Coffea canephora HOM05D005492 ORTHO05D006911 4.8e-94 347.8 172 91.9
Lsat_1_v5_gn_9_81101 Lactuca sativa HOM05D005492 ORTHO05D006911 4.8e-94 347.8 172 91.3
Lj4A81T75 Lonicera japonica HOM05D005492 ORTHO05D006911 4.8e-94 347.8 172 91.3
BcaC01g01601 Brassica carinata HOM05D005492 ORTHO05D006911 6.3e-94 347.4 172 89.5
unitig_8.g4867 Utricularia gibba HOM05D002193 ORTHO05D002631 6.3e-94 347.4 169 90.5
HanXRQChr01g0001771 Helianthus annuus HOM05D005492 ORTHO05D006911 8.2e-94 347.1 172 91.3
Ah.00g000130 Amaranthus hybridus HOM05D005492 ORTHO05D006911 1.1e-93 346.7 172 90.7
BcaC05g26754 Brassica carinata HOM05D005492 ORTHO05D006911 1.1e-93 346.7 172 89.5
Migut.N02829 Erythranthe guttata HOM05D005492 ORTHO05D006911 1.1e-93 346.7 176 88.1
Migut.O00437 Erythranthe guttata HOM05D005492 ORTHO05D006911 1.1e-93 346.7 176 88.1
Atru.BG.248.p Acer truncatum HOM05D005492 ORTHO05D006911 1.4e-93 346.3 172 91.3
Rhsim07G0214900 Rhododendron simsii HOM05D005492 ORTHO05D006911 1.4e-93 346.3 172 91.3
BcaC06g35300 Brassica carinata HOM05D005492 ORTHO05D006911 1.8e-93 345.9 172 89.5
AUR62035696 Chenopodium quinoa HOM05D005492 ORTHO05D006911 3.1e-93 345.1 175 88.6
Aa31LG7G10120 Aethionema arabicum HOM05D005492 ORTHO05D006911 4.1e-93 344.7 175 90.3
BcaB03g13980 Brassica carinata HOM05D005492 ORTHO05D006911 4.1e-93 344.7 172 89.0
Sc02g0008380 Simmondsia chinensis HOM05D005492 ORTHO05D006911 5.3e-93 344.4 172 90.7
AUR62035408 Chenopodium quinoa HOM05D005492 ORTHO05D006911 6.9e-93 344.0 175 88.0
ECA232G4293 Erigeron canadensis HOM05D005492 ORTHO05D006911 3.4e-92 341.7 172 89.5
TAR381G0934 Trochodendron aralioides HOM05D005492 ORTHO05D006911 2.9e-91 338.6 172 90.7
MSTRG.22188 Avicennia marina HOM05D005492 ORTHO05D006911 3.8e-91 338.2 172 90.1
HPP92_010753 Vanilla planifolia HOM05D005492 ORTHO05D006911 1.4e-88 329.7 172 86.0
SEGI_29138 Sequoiadendron giganteum HOM05D005492 ORTHO05D006911 6.7e-88 327.4 173 83.8
Hund05232 Selenicereus undatus HOM05D005492 ORTHO05D006911 4.8e-86 321.2 241 66.0
ATR0767G107 Amborella trichopoda HOM05D005492 ORTHO05D006911 7.0e-85 317.4 169 84.0
Os10g0205200 Oryza sativa ssp. japonica HOM05D005492 ORTHO05D006911 1.6e-84 316.2 169 82.8
Zm00001eb010950 Zea mays HOM05D005492 ORTHO05D006911 4.5e-84 314.7 175 79.4
Mapoly0013s0107 Marchantia polymorpha HOM05D005492 ORTHO05D006911 3.2e-82 308.5 176 77.3
ClCG11G014860 Citrullus lanatus HOM05D005492 ORTHO05D006911 5.5e-82 307.8 147 93.2
Peaxi162Scf00626g00718 Petunia axillaris HOM05D005492 ORTHO05D006911 1.3e-78 296.6 178 79.8
CBR_g37394 Chara braunii HOM05D005492 ORTHO05D006911 6.3e-78 294.3 170 75.9
Pp3c16_2350 Physcomitrium patens HOM05D005492 ORTHO05D006911 7.0e-77 290.8 173 72.8
Phvul.009G146200 Phaseolus vulgaris HOM05D005492 ORTHO05D006911 2.9e-75 285.4 131 97.7
Cfa015905 Carpinus fangiana HOM05D005492 ORTHO05D000088 1.8e-72 276.2 172 78.5
PRCOL_00001807 Prasinoderma coloniale HOM05D005492 ORTHO05D006911 2.3e-72 275.8 165 70.9
DCAR_009548 Daucus carota HOM05D005492 ORTHO05D006911 1.5e-71 273.1 132 92.4
TAR381G1662 Trochodendron aralioides HOM05D005492 ORTHO05D006911 2.0e-71 272.7 131 92.4
Cre02.g142350 Chlamydomonas reinhardtii HOM05D005492 ORTHO05D006911 3.2e-66 255.4 164 67.7
Atru.chr13.934 Acer truncatum HOM05D005492 ORTHO05D006911 1.4e-64 250.0 125 90.4
MELO3C003490.2 Cucumis melo HOM05D005492 ORTHO05D006911 2.0e-60 236.1 124 86.3
FvH4_5g33720 Fragaria vesca HOM05D005492 ORTHO05D006911 1.1e-58 230.3 112 92.0
Duzib093G0511 Durio zibethinus HOM05D005492 ORTHO05D006911 4.4e-55 218.4 116 82.8
THA.LOC104807850 Tarenaya hassleriana HOM05D005492 ORTHO05D006911 9.8e-55 217.2 125 78.4
MBI16_g14677_MAGBIO Magnolia biondii HOM05D005492 ORTHO05D006911 1.7e-54 216.5 114 86.8
Haze_27628 Corylus avellana HOM05D005492 ORTHO05D006911 6.4e-54 214.5 171 56.1
AagrBONN_evm.TU.Sc2ySwM_369.477 Anthoceros agrestis HOM05D005492 ORTHO05D006911 3.0e-51 205.7 112 77.7
Prupe.7G085600 Prunus persica HOM05D005492 ORTHO05D006911 4.3e-50 201.8 104 87.5
Nn2g14030 Nelumbo nucifera HOM05D005492 ORTHO05D006911 6.4e-46 188.0 142 66.9
CSS0004398 Camellia sinensis var. sinensis HOM05D005492 ORTHO05D006911 1.0e-43 180.6 91 89.0
MD08G1145300 Malus domestica HOM05D005492 ORTHO05D006911 6.4e-38 161.4 88 83.0
Dinv07042 Davidia involucrata HOM05D005492 ORTHO05D185078 1.5e-34 150.2 174 50.6
MD16G1251000 Malus domestica HOM05D005492 ORTHO05D245813 1.6e-33 146.7 109 66.1
MD05G1007500 Malus domestica HOM05D005492 ORTHO05D006911 1.7e-30 136.7 114 60.5
Nn5g29750 Nelumbo nucifera HOM05D005492 ORTHO05D006911 2.3e-27 126.3 63 88.9
MD00G1203800 Malus domestica HOM05D005492 ORTHO05D247194 4.0e-24 115.5 92 59.8


User provided reference genes

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