Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.04G084800 Glycine max HOM05D007429 ORTHO05D003505 4.6e-43 177.6 94 100.0
Glyma.06G086300 Glycine max HOM05D007429 ORTHO05D003505 3.6e-40 167.9 94 93.6
Phvul.009G110300 Phaseolus vulgaris HOM05D007429 ORTHO05D003505 4.9e-37 157.5 94 88.3
Lj1g0025254 Lotus japonicus HOM05D007429 ORTHO05D003505 9.3e-28 126.7 94 74.5
Medtr3g109720 Medicago truncatula HOM05D007429 ORTHO05D003505 1.2e-27 126.3 95 78.9
TPR.G15111 Trifolium pratense HOM05D007429 ORTHO05D003505 1.2e-27 126.3 94 77.7
Thecc.09G045900 Theobroma cacao HOM05D007429 ORTHO05D003505 1.1e-25 119.8 94 71.3
Gorai.009G049400 Gossypium raimondii HOM05D007429 ORTHO05D003505 6.2e-24 114.0 94 68.1
Duzib187G1405 Durio zibethinus HOM05D007429 ORTHO05D003505 5.3e-23 110.9 94 67.0
MELO3C003465.2 Cucumis melo HOM05D007429 ORTHO05D003505 2.6e-22 108.6 94 67.0
ClCG11G015140 Citrullus lanatus HOM05D007429 ORTHO05D003505 4.5e-22 107.8 94 68.1
CSS0002972 Camellia sinensis var. sinensis HOM05D007429 ORTHO05D003505 5.8e-22 107.5 94 66.0
CsaV3_3G048540 Cucumis sativus L. HOM05D007429 ORTHO05D003505 5.8e-22 107.5 94 67.0
Gohir.D08G270600 Gossypium hirsutum HOM05D007429 ORTHO05D003505 5.8e-22 107.5 96 68.8
Atru.chr7.2081 Acer truncatum HOM05D007429 ORTHO05D003505 1.7e-21 105.9 96 65.6
EL10Ac2g04004 Beta vulgaris HOM05D007429 ORTHO05D003505 8.4e-21 103.6 98 65.3
Sabra06G0186000 Salix brachista HOM05D007429 ORTHO05D003505 8.4e-21 103.6 94 62.8
Duzib168G1390 Durio zibethinus HOM05D007429 ORTHO05D003505 1.4e-20 102.8 83 66.3
Dinv23374 Davidia involucrata HOM05D007429 ORTHO05D003505 1.9e-20 102.4 98 65.3
Potri.006G237800 Populus trichocarpa HOM05D007429 ORTHO05D003505 2.5e-20 102.1 94 61.7
Actinidia13337 Actinidia chinensis HOM05D007429 ORTHO05D003505 4.2e-20 101.3 97 61.9
VMungo1309G0862 Vigna mungo HOM05D007429 ORTHO05D003505 4.2e-20 101.3 81 67.9
Manes.16G075000 Manihot esculenta HOM05D007429 ORTHO05D003505 7.1e-20 100.5 96 64.6
THA.LOC104811265 Tarenaya hassleriana HOM05D007429 ORTHO05D003505 7.1e-20 100.5 94 63.8
Actinidia14679 Actinidia chinensis HOM05D007429 ORTHO05D003505 1.2e-19 99.8 94 61.7
Sopen08g020350 Solanum pennellii HOM05D007429 ORTHO05D003505 1.6e-19 99.4 94 63.8
Eucgr.C00555 Eucalyptus grandis HOM05D007429 ORTHO05D003505 2.1e-19 99.0 94 59.6
Eucgr.C00601 Eucalyptus grandis HOM05D007429 ORTHO05D003505 2.1e-19 99.0 94 59.6
MD08G1113300 Malus domestica HOM05D007429 ORTHO05D003505 2.1e-19 99.0 94 62.8
MD15G1092600 Malus domestica HOM05D007429 ORTHO05D003505 2.1e-19 99.0 94 62.8
Sp6g31990 Schrenkiella parvula HOM05D007429 ORTHO05D003505 2.1e-19 99.0 95 64.2
CiPaw.08G026200 Carya illinoinensis HOM05D007429 ORTHO05D003505 3.5e-19 98.2 96 61.5
AUR62042440 Chenopodium quinoa HOM05D007429 ORTHO05D003505 3.5e-19 98.2 95 62.1
PGSC0003DMG402029142 Solanum tuberosum HOM05D007429 ORTHO05D003505 3.5e-19 98.2 94 62.8
Aqoxy7G01463 Aquilegia oxysepala HOM05D007429 ORTHO05D003505 4.6e-19 97.8 100 61.0
Gohir.D05G048100 Gossypium hirsutum HOM05D007429 ORTHO05D003505 4.6e-19 97.8 85 64.7
AT5G11630 Arabidopsis thaliana HOM05D007429 ORTHO05D003505 6.0e-19 97.4 95 63.2
arahy.Tifrunner.gnm1.ann1.ZH3G1A Arachis hypogaea HOM05D007429 ORTHO05D003505 7.9e-19 97.1 118 52.5
A02p01120 Brassica napus HOM05D007429 ORTHO05D003505 7.9e-19 97.1 95 64.2
BraA02t05091Z Brassica rapa HOM05D007429 ORTHO05D003505 7.9e-19 97.1 95 64.2
Oeu030718.1 Olea europaea HOM05D007429 ORTHO05D003505 7.9e-19 97.1 95 61.1
A10p26140 Brassica napus HOM05D007429 ORTHO05D003505 1.0e-18 96.7 95 65.3
BraA10t44673Z Brassica rapa HOM05D007429 ORTHO05D003505 1.0e-18 96.7 95 65.3
AUR62009266 Chenopodium quinoa HOM05D007429 ORTHO05D003505 1.0e-18 96.7 95 61.1
Lsat_1_v5_gn_6_22640 Lactuca sativa HOM05D007429 ORTHO05D003505 1.0e-18 96.7 94 62.8
FAN27G3027 Fragaria x ananassa HOM05D007429 ORTHO05D003505 1.3e-18 96.3 94 63.8
BcaB08g37037 Brassica carinata HOM05D007429 ORTHO05D003505 1.8e-18 95.9 95 65.3
BcaC03g13383 Brassica carinata HOM05D007429 ORTHO05D003505 1.8e-18 95.9 95 63.2
BcaC04g19209 Brassica carinata HOM05D007429 ORTHO05D003505 1.8e-18 95.9 95 64.2
C02p05300 Brassica napus HOM05D007429 ORTHO05D003505 1.8e-18 95.9 95 63.2
BolC2t06478H Brassica oleracea HOM05D007429 ORTHO05D003505 1.8e-18 95.9 95 63.2
BolC9t59348H Brassica oleracea HOM05D007429 ORTHO05D003505 1.8e-18 95.9 95 64.2
Carub.0006s1011 Capsella rubella HOM05D007429 ORTHO05D003505 1.8e-18 95.9 95 62.1
Dinv27908 Davidia involucrata HOM05D007429 ORTHO05D003505 1.8e-18 95.9 97 60.8
Solyc08g066520.3 Solanum lycopersicum HOM05D007429 ORTHO05D003505 1.8e-18 95.9 92 62.0
AL6G22340 Arabidopsis lyrata HOM05D007429 ORTHO05D003505 2.3e-18 95.5 95 62.1
C09p65190 Brassica napus HOM05D007429 ORTHO05D003505 3.0e-18 95.1 95 64.2
Aa31LG3G15560 Aethionema arabicum HOM05D007429 ORTHO05D003505 3.9e-18 94.7 95 62.1
Gohir.A05G046400 Gossypium hirsutum HOM05D007429 ORTHO05D003505 3.9e-18 94.7 84 67.9
arahy.Tifrunner.gnm1.ann1.R0MHDP Arachis hypogaea HOM05D007429 ORTHO05D003505 6.7e-18 94.0 118 50.0
Ciclev10010039m.g Citrus clementina HOM05D007429 ORTHO05D003505 6.7e-18 94.0 83 65.1
Nn8g39115 Nelumbo nucifera HOM05D007429 ORTHO05D003505 6.7e-18 94.0 85 63.5
CSS0037511 Camellia sinensis var. sinensis HOM05D007429 ORTHO05D003505 1.1e-17 93.2 99 59.6
Gohir.A08G249800 Gossypium hirsutum HOM05D007429 ORTHO05D003505 2.5e-17 92.0 85 67.1
TWI34G0747 Tripterygium wilfordii HOM05D007429 ORTHO05D003505 2.5e-17 92.0 94 62.8
Lalb_Chr23g0269661 Lupinus albus HOM05D007429 ORTHO05D003505 3.3e-17 91.7 86 64.0
RcHm_v2.0_Chr6g0306421 Rosa chinensis HOM05D007429 ORTHO05D003505 4.3e-17 91.3 94 63.8
Hund19504 Selenicereus undatus HOM05D007429 ORTHO05D003505 5.7e-17 90.9 95 61.1
FvH4_2g35460 Fragaria vesca HOM05D007429 ORTHO05D003505 9.7e-17 90.1 83 63.9
FAN20G1676 Fragaria x ananassa HOM05D002792 ORTHO05D003039 1.6e-16 89.4 88 63.6
Cfa013372 Carpinus fangiana HOM05D007429 ORTHO05D003505 2.2e-16 89.0 96 57.3
HanXRQChr02g0050601 Helianthus annuus HOM05D007429 ORTHO05D003505 2.8e-16 88.6 96 59.4
Sabra06G0186100 Salix brachista HOM05D008609 ORTHO05D010987 3.7e-16 88.2 85 60.0
TWI63G1379 Tripterygium wilfordii HOM05D007429 ORTHO05D003505 3.7e-16 88.2 83 63.9
Sc09g0009340 Simmondsia chinensis HOM05D007429 ORTHO05D003505 4.8e-16 87.8 94 57.4
CARHR187590 Cardamine hirsuta HOM05D007429 ORTHO05D003505 1.4e-15 86.3 96 60.4
Thhalv10005203m.g Eutrema salsugineum HOM05D007429 ORTHO05D003505 1.4e-15 86.3 94 62.8
Gorai.004G288500 Gossypium raimondii HOM05D007429 ORTHO05D003505 2.4e-15 85.5 77 67.5
Prupe.1G447500 Prunus persica HOM05D007429 ORTHO05D003505 2.4e-15 85.5 83 62.7
Thhalv10015136m.g Eutrema salsugineum HOM05D007429 ORTHO05D003505 4.1e-15 84.7 84 64.3
GSVIVG01035615001 Vitis vinifera HOM05D007429 ORTHO05D003505 5.3e-15 84.3 85 64.7
Sed0003359 Sechium edule HOM05D007429 ORTHO05D003505 6.9e-15 84.0 85 58.8
PSO173G0075 Papaver somniferum HOM05D007429 ORTHO05D003505 9.0e-15 83.6 83 59.0
PSO824G0083 Papaver somniferum HOM05D007429 ORTHO05D003505 9.0e-15 83.6 83 59.0
Nn6g35292 Nelumbo nucifera HOM05D007429 ORTHO05D003505 1.5e-14 82.8 83 59.0
PGR031G3761 Punica granatum HOM05D007429 ORTHO05D003505 1.5e-14 82.8 83 60.2
CANSAT25G2095 Cannabis sativa HOM05D007429 ORTHO05D003505 3.4e-14 81.6 83 55.4
Cc08_g09700 Coffea canephora HOM05D007429 ORTHO05D003505 4.5e-14 81.3 91 56.0
CDE02G4418 Ceratophyllum demersum HOM05D007429 ORTHO05D003505 7.7e-14 80.5 87 56.3
CiPaw.07G203700 Carya illinoinensis HOM05D007429 ORTHO05D003505 1.0e-13 80.1 85 58.8
ECA233G1441 Erigeron canadensis HOM05D007429 ORTHO05D003505 1.0e-13 80.1 96 54.2
Ca_15587_v3 Cicer arietinum L. HOM05D002792 ORTHO05D003039 1.3e-13 79.7 55 80.0
Lalb_Chr08g0243031 Lupinus albus HOM05D007429 ORTHO05D003505 2.9e-13 78.6 47 83.0
CARHR201590 Cardamine hirsuta HOM05D007429 ORTHO05D003505 3.8e-13 78.2 84 59.5
SGA_v2.0_scaffold163G38070 Striga asiatica HOM05D007429 ORTHO05D003505 6.5e-13 77.4 131 43.5
DCAR_000754 Daucus carota HOM05D002792 ORTHO05D003039 1.9e-12 75.9 47 83.0
CDE04G0746 Ceratophyllum demersum HOM05D007429 ORTHO05D003505 2.5e-12 75.5 87 52.9
Migut.E01531 Erythranthe guttata HOM05D007429 ORTHO05D003505 9.4e-12 73.6 94 50.0
Cfa013373 Carpinus fangiana HOM05D007429 ORTHO05D003505 4.6e-11 71.2 47 78.7
Manes.07G073601 Manihot esculenta HOM05D007429 ORTHO05D003505 7.9e-11 70.5 85 55.3
MBI01_g42895_MAGBIO Magnolia biondii HOM05D007429 ORTHO05D003505 3.9e-10 68.2 45 77.8
arahy.Tifrunner.gnm1.ann1.QV68FE Arachis hypogaea HOM05D007429 ORTHO05D003505 5.1e-10 67.8 88 51.1
Cpa.g.sc29.168 Carica papaya HOM05D006762 ORTHO05D003505 2.0e-09 65.9 109 45.0
Potri.017G068600 Populus trichocarpa HOM05D006762 ORTHO05D003505 2.5e-09 65.5 100 42.0
GSVIVG01006992001 Vitis vinifera HOM05D006762 ORTHO05D003505 9.7e-09 63.5 103 42.7
Aa31csc22G110 Aethionema arabicum HOM05D006762 ORTHO05D003505 2.2e-08 62.4 93 46.2
Nitab4.5_0001501g0020 Nicotiana tabacum HOM05D006762 ORTHO05D003505 3.7e-08 61.6 95 46.3
TAR629G0824 Trochodendron aralioides HOM05D006762 ORTHO05D003505 4.8e-08 61.2 91 47.3
BcaC06g31384 Brassica carinata HOM05D006762 ORTHO05D003505 6.3e-08 60.8 40 72.5
BcaC06g34251 Brassica carinata HOM05D006762 ORTHO05D003505 6.3e-08 60.8 40 72.5
C07p31100 Brassica napus HOM05D006762 ORTHO05D003505 6.3e-08 60.8 40 72.5
FAN08G1018 Fragaria x ananassa HOM05D006762 ORTHO05D003505 6.3e-08 60.8 98 44.9
GSVIVG01004713001 Vitis vinifera HOM05D006762 ORTHO05D003505 6.3e-08 60.8 103 41.7
A02p31340 Brassica napus HOM05D006762 ORTHO05D003505 8.2e-08 60.5 40 72.5
C02p48680 Brassica napus HOM05D006762 ORTHO05D003505 8.2e-08 60.5 40 72.5
BolC2t10960H Brassica oleracea HOM05D006762 ORTHO05D003505 8.2e-08 60.5 40 72.5
BraA02t08136Z Brassica rapa HOM05D006762 ORTHO05D003505 8.2e-08 60.5 40 72.5
Medtr4g100820 Medicago truncatula HOM05D006762 ORTHO05D003505 8.2e-08 60.5 99 44.4
Aqoxy7G00783 Aquilegia oxysepala HOM05D006762 ORTHO05D003505 1.1e-07 60.1 71 56.3
AL7G37400 Arabidopsis lyrata HOM05D006762 ORTHO05D003505 1.8e-07 59.3 40 72.5
Nitab4.5_0000882g0040 Nicotiana tabacum HOM05D006762 ORTHO05D003505 1.8e-07 59.3 82 50.0
Sp2g12170 Schrenkiella parvula HOM05D006762 ORTHO05D003505 1.8e-07 59.3 40 72.5
BcaC06g31382 Brassica carinata HOM05D006762 ORTHO05D003505 2.4e-07 58.9 40 70.0
FAN04G0434 Fragaria x ananassa HOM05D006762 ORTHO05D003505 2.4e-07 58.9 98 43.9
Manes.01G081200 Manihot esculenta HOM05D006762 ORTHO05D003505 2.4e-07 58.9 111 40.5
SalBow6G0204 Salvia bowleyana HOM05D006762 ORTHO05D003505 2.4e-07 58.9 84 45.2
ClCG10G002600 Citrullus lanatus HOM05D006762 ORTHO05D003505 3.1e-07 58.5 91 39.6
FAN18G2762 Fragaria x ananassa HOM05D006762 ORTHO05D003505 3.1e-07 58.5 98 43.9
HanXRQChr03g0087771 Helianthus annuus HOM05D006762 ORTHO05D003505 3.1e-07 58.5 92 47.8
Phvul.003G221200 Phaseolus vulgaris HOM05D006762 ORTHO05D003505 3.1e-07 58.5 87 46.0
Sabra16G0215100 Salix brachista HOM05D006762 ORTHO05D003505 3.1e-07 58.5 99 40.4
A06p45070 Brassica napus HOM05D006762 ORTHO05D003505 5.3e-07 57.8 39 71.8
COL.COLO4_37166 Corchorus olitorius HOM05D006762 ORTHO05D003505 5.3e-07 57.8 47 63.8
FAN13G0097 Fragaria x ananassa HOM05D000502 ORTHO05D000356 6.9e-07 57.4 96 42.7
Lalb_Chr09g0330061 Lupinus albus HOM05D006762 ORTHO05D003505 6.9e-07 57.4 92 44.6
SalBow6G1716 Salvia bowleyana HOM05D006762 ORTHO05D003505 6.9e-07 57.4 102 43.1
arahy.Tifrunner.gnm1.ann1.YI4YN9 Arachis hypogaea HOM05D006762 ORTHO05D003505 9.1e-07 57.0 50 60.0
Ciclev10023003m.g Citrus clementina HOM05D006762 ORTHO05D003505 9.1e-07 57.0 102 43.1
QL04p035820 Quercus lobata HOM05D006762 ORTHO05D003505 9.1e-07 57.0 90 43.3
RcHm_v2.0_Chr7g0203511 Rosa chinensis HOM05D006762 ORTHO05D003505 9.1e-07 57.0 92 46.7
ATR0705G084 Amborella trichopoda HOM05D007429 ORTHO05D003505 1.2e-06 56.6 86 44.2
ATR0315G039 Amborella trichopoda HOM05D003477 ORTHO05D004043 1.5e-06 56.2 97 41.2
Migut.A01106 Erythranthe guttata HOM05D006762 ORTHO05D003505 1.5e-06 56.2 100 40.0
vmacro21548 Vaccinium macrocarpon HOM05D006762 ORTHO05D003505 1.5e-06 56.2 93 39.8
BcaC03g16962 Brassica carinata HOM05D006762 ORTHO05D003505 2.0e-06 55.8 37 73.0
Oeu020431.1 Olea europaea HOM05D006762 ORTHO05D003505 2.6e-06 55.5 92 42.4
Sed0021009 Sechium edule HOM05D006762 ORTHO05D003505 2.6e-06 55.5 84 41.7
Ca_21971_v3 Cicer arietinum L. HOM05D006762 ORTHO05D003505 3.4e-06 55.1 91 49.5
MELO3C013933.2 Cucumis melo HOM05D006762 ORTHO05D003505 3.4e-06 55.1 99 41.4
AL8G10530 Arabidopsis lyrata HOM05D006762 ORTHO05D003505 4.5e-06 54.7 37 73.0
CANSAT21G1567 Cannabis sativa HOM05D006762 ORTHO05D003505 4.5e-06 54.7 81 43.2
CAN.G1058.38 Capsicum annuum HOM05D006762 ORTHO05D003505 4.5e-06 54.7 99 43.4
CDE12G0636 Ceratophyllum demersum HOM05D006762 ORTHO05D003505 4.5e-06 54.7 78 46.2
AUR62007089 Chenopodium quinoa HOM05D006762 ORTHO05D003505 4.5e-06 54.7 43 67.4
AUR62019952 Chenopodium quinoa HOM05D006762 ORTHO05D003505 4.5e-06 54.7 43 67.4
BolC7t43652H Brassica oleracea HOM05D006762 ORTHO05D003505 5.9e-06 54.3 36 72.2
BraA06t27376Z Brassica rapa HOM05D006762 ORTHO05D003505 5.9e-06 54.3 36 72.2
Lj4g0004620 Lotus japonicus HOM05D006762 ORTHO05D003505 5.9e-06 54.3 93 41.9
Potri.001G333800 Populus trichocarpa HOM05D006762 ORTHO05D003505 5.9e-06 54.3 89 43.8
QL12p012005 Quercus lobata HOM05D006762 ORTHO05D003505 5.9e-06 54.3 94 41.5
PGR031G2035 Punica granatum HOM05D006762 ORTHO05D003505 7.7e-06 53.9 83 42.2
PGSC0003DMG400004817 Solanum tuberosum HOM05D006762 ORTHO05D003505 7.7e-06 53.9 98 42.9


User provided reference genes

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