Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.04G084600 Glycine max HOM05D002792 ORTHO05D003039 2.5e-56 221.9 112 100.0
Glyma.06G086200 Glycine max HOM05D002792 ORTHO05D003039 1.8e-46 189.1 105 89.5
Glyma.14G143300 Glycine max HOM05D002792 ORTHO05D003039 3.6e-42 174.9 105 86.7
Phvul.009G110200 Phaseolus vulgaris HOM05D002792 ORTHO05D003039 4.8e-39 164.5 105 81.0
Lj1g0023402 Lotus japonicus HOM05D002792 ORTHO05D003039 4.5e-37 157.9 105 76.2
arahy.Tifrunner.gnm1.ann1.GFJ9I4 Arachis hypogaea HOM05D002792 ORTHO05D003039 1.3e-36 156.4 101 80.2
arahy.Tifrunner.gnm1.ann1.FW97GV Arachis hypogaea HOM05D002792 ORTHO05D003039 2.9e-36 155.2 101 79.2
Psat5g021080 Pisum sativum HOM05D002792 ORTHO05D003039 1.4e-35 152.9 93 81.7
Medtr3g109700 Medicago truncatula HOM05D002792 ORTHO05D003039 7.2e-35 150.6 100 80.0
Lalb_Chr08g0243041 Lupinus albus HOM05D002792 ORTHO05D003039 3.0e-33 145.2 100 77.0
CiPaw.08G026100 Carya illinoinensis HOM05D002792 ORTHO05D003039 1.3e-31 139.8 97 76.3
TPR.G15097 Trifolium pratense HOM05D002792 ORTHO05D003039 2.6e-29 132.1 85 77.6
Ciclev10009570m.g Citrus clementina HOM05D002792 ORTHO05D003039 5.9e-29 131.0 105 65.7
QL12p041309 Quercus lobata HOM05D002792 ORTHO05D003039 5.9e-29 131.0 88 76.1
Manes.03G059000 Manihot esculenta HOM05D002792 ORTHO05D003039 5.0e-28 127.9 105 65.7
FAN15G1596 Fragaria x ananassa HOM05D002792 ORTHO05D003039 1.1e-27 126.7 107 64.5
RcHm_v2.0_Chr6g0306411 Rosa chinensis HOM05D002792 ORTHO05D003039 3.2e-27 125.2 107 63.6
FAN20G1676 Fragaria x ananassa HOM05D002792 ORTHO05D003039 3.6e-26 121.7 107 63.6
Prupe.1G447600 Prunus persica HOM05D002792 ORTHO05D003039 3.6e-26 121.7 105 62.9
FvH4_2g35470 Fragaria vesca HOM05D002792 ORTHO05D003039 4.7e-26 121.3 107 63.6
TWI34G0935 Tripterygium wilfordii HOM05D002792 ORTHO05D003039 4.7e-26 121.3 99 64.6
Atru.chr7.2082 Acer truncatum HOM05D002792 ORTHO05D003039 6.1e-26 120.9 107 61.7
MELO3C003464.2 Cucumis melo HOM05D002792 ORTHO05D003039 1.0e-25 120.2 98 67.3
CsaV3_3G048550 Cucumis sativus L. HOM05D002792 ORTHO05D003039 1.0e-25 120.2 98 67.3
THA.LOC104803806 Tarenaya hassleriana HOM05D002792 ORTHO05D003039 1.0e-25 120.2 91 64.8
Eucgr.C00600 Eucalyptus grandis HOM05D002792 ORTHO05D003039 1.8e-25 119.4 99 60.6
Thecc.09G045800 Theobroma cacao HOM05D002792 ORTHO05D003039 2.3e-25 119.0 105 64.8
TAR626G1718 Trochodendron aralioides HOM05D002792 ORTHO05D003039 3.0e-25 118.6 96 64.6
Sed0001182 Sechium edule HOM05D002792 ORTHO05D003039 3.9e-25 118.2 99 62.6
Dinv27907 Davidia involucrata HOM05D002792 ORTHO05D003039 5.2e-25 117.9 87 65.5
Actinidia30279 Actinidia chinensis HOM05D002792 ORTHO05D003039 8.8e-25 117.1 97 66.0
CANSAT25G1031 Cannabis sativa HOM05D002792 ORTHO05D003039 8.8e-25 117.1 93 68.8
Gorai.009G049500 Gossypium raimondii HOM05D002792 ORTHO05D003039 5.7e-24 114.4 105 61.0
Lj8A578G16 Lonicera japonica HOM05D002792 ORTHO05D003039 5.7e-24 114.4 92 66.3
Eucgr.C00554 Eucalyptus grandis HOM05D002792 ORTHO05D003039 9.7e-24 113.6 99 59.6
Hma1.2p1_0049F.1_g028510 Hydrangea macrophylla HOM05D002792 ORTHO05D003039 9.7e-24 113.6 108 57.4
Oeu043885.1 Olea europaea HOM05D002792 ORTHO05D003039 1.3e-23 113.2 105 61.0
SalBow1G0964 Salvia bowleyana HOM05D002792 ORTHO05D003039 1.7e-23 112.8 99 61.6
MD15G1092700 Malus domestica HOM05D002792 ORTHO05D003039 3.7e-23 111.7 90 65.6
ClCG11G015150 Citrullus lanatus HOM05D002792 ORTHO05D003039 4.8e-23 111.3 99 64.6
Potri.006G237900 Populus trichocarpa HOM05D002792 ORTHO05D003039 8.2e-23 110.5 100 61.0
Aa31sc131G50 Aethionema arabicum HOM05D002792 ORTHO05D003039 1.4e-22 109.8 97 58.8
PGSC0003DMG400002231 Solanum tuberosum HOM05D002792 ORTHO05D003039 1.4e-22 109.8 96 59.4
Hund19508 Selenicereus undatus HOM05D002792 ORTHO05D003039 1.8e-22 109.4 107 57.9
Eucgr.C02937 Eucalyptus grandis HOM05D002792 ORTHO05D003039 2.4e-22 109.0 92 60.9
Solyc08g066540.3 Solanum lycopersicum HOM05D002792 ORTHO05D003039 2.4e-22 109.0 90 61.1
Thhalv10027598m.g Eutrema salsugineum HOM05D002792 ORTHO05D003039 3.1e-22 108.6 99 56.6
Peaxi162Scf00227g00109 Petunia axillaris HOM05D002792 ORTHO05D003039 3.1e-22 108.6 101 55.4
Sc23g0005200 Simmondsia chinensis HOM05D002792 ORTHO05D003039 9.1e-22 107.1 106 56.6
Sopen08g020380 Solanum pennellii HOM05D002792 ORTHO05D003039 9.1e-22 107.1 98 55.1
A01p05380 Brassica napus HOM05D002792 ORTHO05D003039 1.2e-21 106.7 99 56.6
BraA01t00512Z Brassica rapa HOM05D002792 ORTHO05D003039 1.2e-21 106.7 99 56.6
Cc08_g09690 Coffea canephora HOM05D002792 ORTHO05D003039 1.2e-21 106.7 99 57.6
Nitab4.5_0001515g0040 Nicotiana tabacum HOM05D002792 ORTHO05D003039 1.2e-21 106.7 101 58.4
BcaC09g52089 Brassica carinata HOM05D002792 ORTHO05D003039 1.6e-21 106.3 99 56.6
BolC1t00560H Brassica oleracea HOM05D002792 ORTHO05D003039 2.0e-21 105.9 105 56.2
vmacro11056 Vaccinium macrocarpon HOM05D002792 ORTHO05D003039 2.0e-21 105.9 104 57.7
CSS0012947 Camellia sinensis var. sinensis HOM05D002792 ORTHO05D003039 3.5e-21 105.1 86 68.6
CAN.G400.15 Capsicum annuum HOM05D002792 ORTHO05D003039 3.5e-21 105.1 93 58.1
Carub.0007s0759 Capsella rubella HOM05D002792 ORTHO05D003039 4.5e-21 104.8 99 53.5
Nitab4.5_0003794g0060 Nicotiana tabacum HOM05D002792 ORTHO05D003039 4.5e-21 104.8 100 57.0
C01p05800 Brassica napus HOM05D002792 ORTHO05D003039 1.0e-20 103.6 99 54.5
AL7G18810 Arabidopsis lyrata HOM05D002792 ORTHO05D003039 1.3e-20 103.2 105 51.4
Sp7g30670 Schrenkiella parvula HOM05D002792 ORTHO05D003039 1.3e-20 103.2 99 54.5
PGR031G0555 Punica granatum HOM05D002792 ORTHO05D003039 1.7e-20 102.8 97 57.7
DCAR_000754 Daucus carota HOM05D002792 ORTHO05D003039 2.2e-20 102.4 98 54.1
Nn2g11610 Nelumbo nucifera HOM05D002792 ORTHO05D003039 2.2e-20 102.4 104 51.9
Rhsim02G0176900 Rhododendron simsii HOM05D002792 ORTHO05D003039 6.5e-20 100.9 104 56.7
Sabra06G0186200 Salix brachista HOM05D002792 ORTHO05D003039 2.5e-19 99.0 113 53.1
AT4G32900 Arabidopsis thaliana HOM05D002792 ORTHO05D003039 3.2e-19 98.6 105 50.5
Migut.E01530 Erythranthe guttata HOM05D002792 ORTHO05D003039 3.2e-19 98.6 88 60.2
PSO210G0529 Papaver somniferum HOM05D002792 ORTHO05D003039 4.2e-19 98.2 105 52.4
PSO210G7550 Papaver somniferum HOM05D002792 ORTHO05D003039 5.5e-19 97.8 105 52.4
EL10Ac2g04008 Beta vulgaris HOM05D002792 ORTHO05D003039 7.2e-19 97.4 95 56.8
HanXRQChr16g0509381 Helianthus annuus HOM05D002792 ORTHO05D003039 7.2e-19 97.4 98 56.1
Lsat_1_v5_gn_5_33680 Lactuca sativa HOM05D002792 ORTHO05D003039 1.2e-18 96.7 88 61.4
AUR62042437 Chenopodium quinoa HOM05D002792 ORTHO05D003039 1.6e-18 96.3 97 54.6
CARHR240900 Cardamine hirsuta HOM05D002792 ORTHO05D003039 2.1e-18 95.9 99 48.5
AUR62009270 Chenopodium quinoa HOM05D002792 ORTHO05D003039 3.6e-18 95.1 92 57.6
GSVIVG01035616001 Vitis vinifera HOM05D002792 ORTHO05D003039 4.7e-18 94.7 95 54.7
ATR0705G086 Amborella trichopoda HOM05D002792 ORTHO05D003039 8.0e-18 94.0 89 56.2
Aqoxy7G03895 Aquilegia oxysepala HOM05D002792 ORTHO05D003039 1.4e-17 93.2 90 52.2
unitig_37.g12923 Utricularia gibba HOM05D002792 ORTHO05D003039 2.3e-17 92.4 89 55.1
Ah.09g228070 Amaranthus hybridus HOM05D002792 ORTHO05D003039 4.0e-17 91.7 92 54.3
SEGI_08017 Sequoiadendron giganteum HOM05D002792 ORTHO05D003039 4.1e-14 81.6 97 51.5
Os05g0520200 Oryza sativa ssp. japonica HOM05D002792 ORTHO05D003039 5.3e-14 81.3 101 47.5
CDE05G0140 Ceratophyllum demersum HOM05D002792 ORTHO05D003039 9.1e-14 80.5 97 45.4
HPP92_006373 Vanilla planifolia HOM05D000103 ORTHO05D000049 4.5e-13 78.2 99 43.4
ECA246G3749 Erigeron canadensis HOM05D002792 ORTHO05D003039 5.9e-13 77.8 103 44.7
CSS0041878 Camellia sinensis var. sinensis HOM05D002792 ORTHO05D003039 1.6e-10 69.7 86 48.8
CSS0048808 Camellia sinensis var. sinensis HOM05D002792 ORTHO05D003039 1.6e-10 69.7 53 64.2
CSS0011685 Camellia sinensis var. sinensis HOM05D002792 ORTHO05D003039 2.7e-10 68.9 53 64.2
CSS0034746 Camellia sinensis var. sinensis HOM05D002792 ORTHO05D003039 2.7e-10 68.9 53 64.2
CSS0039761 Camellia sinensis var. sinensis HOM05D002792 ORTHO05D003039 2.7e-10 68.9 53 64.2
CSS0043613 Camellia sinensis var. sinensis HOM05D002792 ORTHO05D003039 2.7e-10 68.9 53 64.2
CSS0021625 Camellia sinensis var. sinensis HOM05D002792 ORTHO05D003039 3.6e-10 68.6 42 76.2
CSS0002691 Camellia sinensis var. sinensis HOM05D002792 ORTHO05D003039 4.7e-10 68.2 53 64.2
Lj8C574G4 Lonicera japonica HOM05D002792 ORTHO05D003039 3.0e-09 65.5 48 58.3
CSS0027278 Camellia sinensis var. sinensis HOM05D002792 ORTHO05D003039 4.0e-09 65.1 53 62.3
SMO230G0072 Selaginella moellendorffii HOM05D002792 ORTHO05D003039 6.8e-09 64.3 101 39.6
Mapoly0110s0033 Marchantia polymorpha HOM05D002792 ORTHO05D003039 1.7e-07 59.7 112 35.7
AagrBONN_evm.TU.Sc2ySwM_228.4156 Anthoceros agrestis HOM05D002792 ORTHO05D003039 1.1e-06 57.0 112 32.1
Pp3c6_14950 Physcomitrium patens HOM05D002792 ORTHO05D003039 5.4e-06 54.7 71 46.5


User provided reference genes

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