Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.04G082500 Glycine max HOM05D005302 ORTHO05D006422 2.1e-304 1048.1 490 100.0
Glyma.06G084100 Glycine max HOM05D005302 ORTHO05D006422 4.4e-278 960.7 490 92.0
Phvul.009G108200 Phaseolus vulgaris HOM05D005302 ORTHO05D006422 1.9e-265 918.7 490 87.3
VMungo1309G1003 Vigna mungo HOM05D005302 ORTHO05D006422 1.1e-260 902.9 490 86.1
Medtr3g110160 Medicago truncatula HOM05D005302 ORTHO05D006422 2.5e-241 838.6 473 82.5
Psat5g022320 Pisum sativum HOM05D005302 ORTHO05D006422 2.6e-238 828.6 505 77.0
Ca_15604_v3 Cicer arietinum L. HOM05D005302 ORTHO05D006422 4.4e-238 827.8 502 78.7
Lalb_Chr08g0243151 Lupinus albus HOM05D005302 ORTHO05D006422 7.5e-238 827.0 493 78.7
FvH4_2g35770 Fragaria vesca HOM05D005302 ORTHO05D006422 3.3e-233 811.6 484 77.1
Lj1g0022106 Lotus japonicus HOM05D005302 ORTHO05D006422 7.3e-233 810.4 425 86.4
RcHm_v2.0_Chr6g0306001 Rosa chinensis HOM05D005302 ORTHO05D006422 2.8e-232 808.5 490 76.9
arahy.Tifrunner.gnm1.ann1.P7Z4SB Arachis hypogaea HOM05D005302 ORTHO05D006422 8.1e-232 807.0 425 85.9
PGR044G1364 Punica granatum HOM05D005302 ORTHO05D006422 1.8e-231 805.8 468 78.4
arahy.Tifrunner.gnm1.ann1.R6A5BY Arachis hypogaea HOM05D005302 ORTHO05D006422 5.2e-231 804.3 441 83.4
CiPaw.08G024700 Carya illinoinensis HOM05D005302 ORTHO05D006422 1.5e-230 802.7 465 77.6
FAN27G3010 Fragaria x ananassa HOM05D005302 ORTHO05D006422 7.1e-228 793.9 484 76.0
MD15G1095400 Malus domestica HOM05D005302 ORTHO05D006422 1.6e-227 792.7 472 76.9
Prupe.1G450300 Prunus persica HOM05D005302 ORTHO05D006422 4.6e-227 791.2 494 75.3
Actinidia13324 Actinidia chinensis HOM05D005302 ORTHO05D006422 2.3e-226 788.9 446 79.8
Rhsim02G0179400 Rhododendron simsii HOM05D005302 ORTHO05D006422 5.6e-225 784.3 446 80.0
Dinv14245 Davidia involucrata HOM05D005302 ORTHO05D006422 3.6e-224 781.6 439 78.1
Nn2g11666 Nelumbo nucifera HOM05D005302 ORTHO05D006422 1.4e-223 779.6 438 80.4
Manes.16G072000 Manihot esculenta HOM05D005302 ORTHO05D006422 5.2e-223 777.7 504 71.4
CiPaw.07G205300 Carya illinoinensis HOM05D005302 ORTHO05D006422 8.9e-223 776.9 433 80.6
Gorai.009G050600 Gossypium raimondii HOM05D005302 ORTHO05D006422 3.4e-222 775.0 468 74.8
MD08G1115600 Malus domestica HOM05D005302 ORTHO05D006422 5.8e-222 774.2 480 75.0
TAR624G0168 Trochodendron aralioides HOM05D005302 ORTHO05D006422 2.9e-221 771.9 442 78.7
Gohir.D05G049300 Gossypium hirsutum HOM05D005302 ORTHO05D006422 3.8e-221 771.5 468 74.4
Eucgr.C02909 Eucalyptus grandis HOM05D005302 ORTHO05D006422 8.4e-221 770.4 428 79.9
CSS0024291 Camellia sinensis var. sinensis HOM05D005302 ORTHO05D006422 3.2e-220 768.5 447 77.9
CSS0027627 Camellia sinensis var. sinensis HOM05D005302 ORTHO05D006422 3.2e-220 768.5 447 77.9
Potri.018G040200 Populus trichocarpa HOM05D005302 ORTHO05D006422 7.1e-220 767.3 495 72.5
TWI34G0390 Tripterygium wilfordii HOM05D005302 ORTHO05D006422 1.2e-219 766.5 490 71.8
Hma1.2p1_0393F.1_g143080 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 2.7e-219 765.4 471 74.5
Atru.chr7.2133 Acer truncatum HOM05D005302 ORTHO05D006422 1.1e-217 760.0 454 74.4
Haze_21877 Corylus avellana HOM05D005302 ORTHO05D006422 1.5e-217 759.6 481 72.6
Cc08_g09240 Coffea canephora HOM05D005302 ORTHO05D006422 1.9e-217 759.2 433 78.1
CANSAT25G0630 Cannabis sativa HOM05D005302 ORTHO05D006422 3.3e-217 758.4 454 74.9
CsaV3_2G030970 Cucumis sativus L. HOM05D005302 ORTHO05D006422 3.3e-217 758.4 465 74.0
QL12p029391 Quercus lobata HOM05D005302 ORTHO05D006422 5.6e-217 757.7 523 69.4
GSVIVG01035645001 Vitis vinifera HOM05D005302 ORTHO05D006422 9.6e-217 756.9 475 72.2
MELO3C011150.2 Cucumis melo HOM05D005302 ORTHO05D006422 3.6e-216 755.0 465 74.0
Thecc.09G042800 Theobroma cacao HOM05D005302 ORTHO05D006422 4.8e-216 754.6 433 76.2
FAN20G2881 Fragaria x ananassa HOM05D005302 ORTHO05D006422 6.2e-216 754.2 517 70.6
Duzib150G0232 Durio zibethinus HOM05D005302 ORTHO05D006422 5.3e-215 751.1 480 70.8
Aqoxy7G03804 Aquilegia oxysepala HOM05D005302 ORTHO05D006422 9.0e-215 750.4 454 74.4
COL.COLO4_18671 Corchorus olitorius HOM05D005302 ORTHO05D006422 4.4e-214 748.0 472 72.5
Migut.A00220 Erythranthe guttata HOM05D005302 ORTHO05D006422 5.8e-214 747.7 475 72.4
EL10Ac2g04046 Beta vulgaris HOM05D005302 ORTHO05D006422 2.9e-213 745.3 473 72.7
ECA246G0277 Erigeron canadensis HOM05D005302 ORTHO05D006422 2.9e-213 745.3 436 76.1
Ciclev10008169m.g Citrus clementina HOM05D005302 ORTHO05D006422 6.4e-213 744.2 461 72.0
FAN15G3230 Fragaria x ananassa HOM05D005302 ORTHO05D006422 7.1e-212 740.7 514 68.7
Sed0007027 Sechium edule HOM05D005302 ORTHO05D006422 7.1e-212 740.7 425 77.2
MSTRG.11705 Avicennia marina HOM05D005302 ORTHO05D006422 9.3e-212 740.3 486 71.2
Gohir.A05G047400 Gossypium hirsutum HOM05D005302 ORTHO05D006422 1.2e-211 740.0 447 74.5
Gohir.A07G022700 Gossypium hirsutum HOM05D005302 ORTHO05D006422 1.2e-211 740.0 471 72.2
PSO210G0275 Papaver somniferum HOM05D005302 ORTHO05D006422 3.5e-211 738.4 438 74.7
PSO210G3865 Papaver somniferum HOM05D005302 ORTHO05D006422 3.5e-211 738.4 438 74.4
Sabra18G0040100 Salix brachista HOM05D005302 ORTHO05D006422 1.0e-210 736.9 496 71.0
Sp7g30530 Schrenkiella parvula HOM05D005302 ORTHO05D006422 1.7e-210 736.1 486 69.1
AUR62009303 Chenopodium quinoa HOM05D005302 ORTHO05D006422 3.0e-210 735.3 475 71.6
Gohir.D07G026100 Gossypium hirsutum HOM05D005302 ORTHO05D006422 3.9e-210 734.9 471 71.3
Gorai.001G027200 Gossypium raimondii HOM05D005302 ORTHO05D006422 5.1e-210 734.6 471 71.3
CARHR240760 Cardamine hirsuta HOM05D005302 ORTHO05D006422 6.6e-210 734.2 484 70.0
HanXRQChr08g0236291 Helianthus annuus HOM05D005302 ORTHO05D006422 1.1e-209 733.4 434 76.0
SGA_v2.0_scaffold103G29944 Striga asiatica HOM05D005302 ORTHO05D006422 1.5e-209 733.0 453 73.3
Peaxi162Scf00822g00210 Petunia axillaris HOM05D005302 ORTHO05D006422 1.9e-209 732.6 427 74.7
PGSC0003DMG400029051 Solanum tuberosum HOM05D005302 ORTHO05D006422 2.5e-209 732.3 435 75.4
SalBow4G1479 Salvia bowleyana HOM05D005302 ORTHO05D006422 1.3e-208 729.9 451 73.2
CAN.G21.50 Capsicum annuum HOM05D005302 ORTHO05D006422 1.6e-208 729.6 438 74.0
Thhalv10025006m.g Eutrema salsugineum HOM05D005302 ORTHO05D006422 3.6e-208 728.4 476 69.7
Nitab4.5_0010908g0010 Nicotiana tabacum HOM05D005302 ORTHO05D006422 4.0e-207 724.9 434 73.0
Sopen08g022330 Solanum pennellii HOM05D005302 ORTHO05D006422 4.0e-207 724.9 481 69.4
BolC7t46379H Brassica oleracea HOM05D005302 ORTHO05D006422 5.3e-207 724.5 446 72.6
C07p59340 Brassica napus HOM05D005302 ORTHO05D006422 9.0e-207 723.8 446 72.6
AT4G32770 Arabidopsis thaliana HOM05D005302 ORTHO05D006422 1.5e-206 723.0 473 69.3
Carub.0007s0772 Capsella rubella HOM05D005302 ORTHO05D006422 1.5e-206 723.0 474 69.6
Solyc08g068570.4 Solanum lycopersicum HOM05D005302 ORTHO05D006422 2.0e-206 722.6 481 69.2
Lj8C588T0 Lonicera japonica HOM05D005302 ORTHO05D006422 7.6e-206 720.7 466 72.3
A03p61580 Brassica napus HOM05D005302 ORTHO05D006422 9.9e-206 720.3 447 72.7
BraA03t15200Z Brassica rapa HOM05D005302 ORTHO05D006422 9.9e-206 720.3 447 72.7
LjContig00226g0022694 Lotus japonicus HOM05D005302 ORTHO05D006422 9.9e-206 720.3 380 86.1
LjContig00518g0000858 Lotus japonicus HOM05D005302 ORTHO05D006422 9.9e-206 720.3 380 86.1
Lsat_1_v5_gn_5_33600 Lactuca sativa HOM05D005302 ORTHO05D006422 3.8e-205 718.4 447 72.3
DCAR_003119 Daucus carota HOM05D005302 ORTHO05D006422 2.4e-204 715.7 450 72.0
AL7G18970 Arabidopsis lyrata HOM05D005302 ORTHO05D006422 4.2e-204 714.9 451 70.5
Aa31LG2G17190 Aethionema arabicum HOM05D005302 ORTHO05D006422 1.1e-201 706.8 428 72.7
ClCG08G012300 Citrullus lanatus HOM05D005302 ORTHO05D006422 3.7e-200 701.8 465 70.1
CDE08G0186 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 6.2e-200 701.0 437 70.0
Os02g0276500 Oryza sativa ssp. japonica HOM05D005302 ORTHO05D006422 3.4e-198 695.3 425 72.9
Lj1g0000494 Lotus japonicus HOM05D005302 ORTHO05D006422 6.5e-197 691.0 380 84.2
unitig_32.g11070 Utricularia gibba HOM05D005302 ORTHO05D006422 3.2e-196 688.7 443 69.1
ATR0315G120 Amborella trichopoda HOM05D005302 ORTHO05D006422 4.6e-195 684.9 434 68.7
Oeu036363.2 Olea europaea HOM05D005302 ORTHO05D006422 1.3e-192 676.8 428 73.8
THA.LOC104803808 Tarenaya hassleriana HOM05D005302 ORTHO05D006422 2.8e-192 675.6 441 71.2
MBI04_g05261_MAGBIO Magnolia biondii HOM05D005302 ORTHO05D006422 3.7e-192 675.2 570 57.4
CDE05G0893 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 3.4e-190 668.7 460 64.1
Sc23g0005290 Simmondsia chinensis HOM05D005302 ORTHO05D006422 2.9e-189 665.6 386 77.7
Nitab4.5_0000513g0060 Nicotiana tabacum HOM05D005302 ORTHO05D006422 5.5e-188 661.4 471 65.0
Hund19525 Selenicereus undatus HOM05D005302 ORTHO05D006422 4.6e-187 658.3 462 67.3
AUR62041718 Chenopodium quinoa HOM05D005302 ORTHO05D006422 6.1e-187 657.9 465 66.9
Cpa.g.sc7.259 Carica papaya HOM05D005302 ORTHO05D006422 3.0e-186 655.6 378 76.5
Lj1g0015489 Lotus japonicus HOM05D005302 ORTHO05D006422 6.9e-183 644.4 425 73.2
Ah.16g105570 Amaranthus hybridus HOM05D005302 ORTHO05D006422 6.7e-178 627.9 370 75.1
Cfa013357 Carpinus fangiana HOM05D005302 ORTHO05D006422 3.7e-176 622.1 428 67.1
HPP92_005269 Vanilla planifolia HOM05D005302 ORTHO05D006422 1.2e-174 617.1 429 67.1
Cfa013434 Carpinus fangiana HOM05D005302 ORTHO05D006422 2.2e-173 612.8 354 77.4
AagrBONN_evm.TU.Sc2ySwM_368.1981 Anthoceros agrestis HOM05D005302 ORTHO05D006422 4.2e-172 608.6 418 65.3
Cfa013356 Carpinus fangiana HOM05D005302 ORTHO05D006422 3.3e-169 599.0 325 80.3
vmacro11066 Vaccinium macrocarpon HOM05D005302 ORTHO05D006422 2.4e-167 592.8 408 69.1
Pp3c7_470 Physcomitrium patens HOM05D005302 ORTHO05D006422 5.3e-167 591.7 463 60.5
Mapoly0027s0036 Marchantia polymorpha HOM05D005302 ORTHO05D006422 3.5e-166 589.0 435 60.9
Haze_21992 Corylus avellana HOM05D005302 ORTHO05D006422 4.5e-166 588.6 518 57.3
Lj1g0026118 Lotus japonicus HOM05D005302 ORTHO05D006422 5.2e-162 575.1 426 67.6
Pp3c20_5100 Physcomitrium patens HOM05D005302 ORTHO05D006422 4.1e-151 538.9 429 57.6
Zm00001eb237270 Zea mays HOM05D005302 ORTHO05D006422 4.7e-147 525.4 321 71.3
SMO351G0603 Selaginella moellendorffii HOM05D005302 ORTHO05D006422 6.1e-147 525.0 396 58.1
CBR_g222 Chara braunii HOM05D005302 ORTHO05D006422 3.2e-135 486.1 427 55.5
Cc07_g15020 Coffea canephora HOM05D005302 ORTHO05D006422 3.2e-135 486.1 269 79.2
Hma1.2p1_1884F.1_g306470 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 6.8e-122 441.8 256 78.1
Cre01.g013801 Chlamydomonas reinhardtii HOM05D005302 ORTHO05D006422 6.4e-104 382.1 448 42.2
Lj7A704G80 Lonicera japonica HOM05D005302 ORTHO05D006422 3.0e-101 373.2 218 73.4
Hma1.2p1_1884F.1_g306480 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 6.7e-85 318.9 184 76.1
Glyma.04G082300 Glycine max HOM05D005302 ORTHO05D006422 1.2e-78 298.1 193 79.3
Lj7A704G81 Lonicera japonica HOM05D005302 ORTHO05D006422 2.8e-75 287.0 162 79.0
MCO11G337 Micromonas commoda HOM05D005302 ORTHO05D006422 2.0e-73 280.8 426 40.4
Hma1.2p1_0393F.1_g143070 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 5.9e-65 252.7 148 73.6
CDE05G2043 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 8.8e-61 238.8 392 36.0
SEGI_29042 Sequoiadendron giganteum HOM05D005302 ORTHO05D006422 7.7e-57 225.7 110 87.3
Hma1.2p1_0393F.1_g143090 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 2.7e-54 217.2 172 63.4
FAN24G1627 Fragaria x ananassa HOM05D005302 ORTHO05D006422 6.3e-51 206.1 118 79.7
SEGI_31241 Sequoiadendron giganteum HOM05D005302 ORTHO05D006422 1.8e-50 204.5 148 57.4
Sabra18G0041600 Salix brachista HOM05D005302 ORTHO05D006422 4.8e-43 179.9 110 74.5
Potri.006G240100 Populus trichocarpa HOM05D005302 ORTHO05D006422 8.5e-40 169.1 185 48.1
SEGI_07805 Sequoiadendron giganteum HOM05D005302 ORTHO05D006422 7.5e-36 156.0 135 57.0
arahy.Tifrunner.gnm1.ann1.B6YE6K Arachis hypogaea HOM05D005302 ORTHO05D006422 8.3e-35 152.5 188 45.2
CDE05G1694 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 4.1e-18 97.1 61 67.2
Sabra18G0041700 Salix brachista HOM05D005302 ORTHO05D006422 3.0e-16 90.9 60 65.0
BcaC09g52073 Brassica carinata HOM05D002602 ORTHO05D002661 3.6e-06 57.4 41 56.1


User provided reference genes

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