Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.04G077000 Glycine max HOM05D003201 ORTHO05D008914 3.5e-194 681.4 339 100.0
VMungo1309G0938 Vigna mungo HOM05D003201 ORTHO05D008914 2.8e-151 538.9 412 71.1
Glyma.06G078200 Glycine max HOM05D003201 ORTHO05D008914 4.1e-142 508.4 277 90.6
TPR.G12401 Trifolium pratense HOM05D003201 ORTHO05D008914 6.6e-132 474.6 277 84.1
Psat5g023760 Pisum sativum HOM05D003201 ORTHO05D008914 7.5e-128 461.1 281 81.5
Lj1g0010900 Lotus japonicus HOM05D003201 ORTHO05D008914 7.0e-126 454.5 278 81.3
arahy.Tifrunner.gnm1.ann1.6BLG7S Arachis hypogaea HOM05D003201 ORTHO05D008914 2.8e-122 442.6 302 73.2
arahy.Tifrunner.gnm1.ann1.N5J460 Arachis hypogaea HOM05D003201 ORTHO05D008914 1.8e-121 439.9 309 71.2
Lalb_Chr11g0064231 Lupinus albus HOM05D003201 ORTHO05D008914 6.8e-121 438.0 296 75.0
Ca_15643_v3 Cicer arietinum L. HOM05D000163 ORTHO05D000219 5.6e-115 418.3 264 77.3
Phvul.009G102800 Phaseolus vulgaris HOM05D003201 ORTHO05D008914 6.0e-109 398.3 204 91.2
Cpa.g.sc30.52 Carica papaya HOM05D003201 ORTHO05D008914 3.0e-100 369.4 278 64.7
GSVIVG01035604001 Vitis vinifera HOM05D003201 ORTHO05D008914 6.2e-98 361.7 278 65.1
QL12p025722 Quercus lobata HOM05D003201 ORTHO05D008914 1.8e-97 360.1 282 63.5
CiPaw.07G210300 Carya illinoinensis HOM05D003201 ORTHO05D008914 5.3e-97 358.6 279 63.1
Manes.02G219100 Manihot esculenta HOM05D003201 ORTHO05D008914 5.8e-96 355.1 278 63.3
CANSAT54G1971 Cannabis sativa HOM05D003201 ORTHO05D008914 3.8e-95 352.4 279 61.3
CsaV3_2G031270 Cucumis sativus L. HOM05D003201 ORTHO05D008914 6.4e-95 351.7 280 61.4
MELO3C011176.2 Cucumis melo HOM05D003201 ORTHO05D008914 2.4e-94 349.7 278 61.9
Thecc.03G318200 Theobroma cacao HOM05D003201 ORTHO05D008914 3.2e-94 349.4 280 63.2
ClCG08G012570 Citrullus lanatus HOM05D003201 ORTHO05D008914 9.3e-94 347.8 277 61.0
Duzib084G1420 Durio zibethinus HOM05D003201 ORTHO05D008914 9.3e-94 347.8 284 62.3
CSS0009288 Camellia sinensis var. sinensis HOM05D003201 ORTHO05D008914 9.6e-91 337.8 281 60.1
CSS0050223 Camellia sinensis var. sinensis HOM05D003201 ORTHO05D008914 1.3e-90 337.4 281 60.1
Gohir.D12G205000 Gossypium hirsutum HOM05D003201 ORTHO05D008914 2.8e-90 336.3 282 58.9
Nitab4.5_0000391g0210 Nicotiana tabacum HOM05D003201 ORTHO05D008914 1.4e-89 334.0 287 55.7
MD15G1105100 Malus domestica HOM05D003201 ORTHO05D008914 1.8e-89 333.6 280 60.0
Migut.E00069 Erythranthe guttata HOM05D003201 ORTHO05D008914 3.1e-89 332.8 282 59.6
CAN.G964.23 Capsicum annuum HOM05D003201 ORTHO05D008914 4.0e-89 332.4 286 57.7
Gohir.A12G202300 Gossypium hirsutum HOM05D003201 ORTHO05D008914 6.9e-89 331.6 282 57.8
Gorai.008G219900 Gossypium raimondii HOM05D003201 ORTHO05D008914 6.9e-89 331.6 282 58.5
Nitab4.5_0012553g0020 Nicotiana tabacum HOM05D003201 ORTHO05D008914 6.9e-89 331.6 277 57.4
Sopen05g007740 Solanum pennellii HOM05D003201 ORTHO05D008914 3.4e-88 329.3 287 56.4
Peaxi162Scf00314g00636 Petunia axillaris HOM05D003201 ORTHO05D008914 1.7e-87 327.0 283 58.0
Prupe.1G456900 Prunus persica HOM05D003201 ORTHO05D008914 1.7e-87 327.0 275 60.7
Hund03239 Selenicereus undatus HOM05D003201 ORTHO05D008914 2.2e-87 326.6 283 59.4
EL10Ac8g19259 Beta vulgaris HOM05D003201 ORTHO05D008914 2.9e-87 326.2 283 59.4
PGSC0003DMG402028340 Solanum tuberosum HOM05D003201 ORTHO05D008914 6.4e-87 325.1 287 55.7
Aqoxy7G00979 Aquilegia oxysepala HOM05D003201 ORTHO05D008914 2.4e-86 323.2 291 57.7
Solyc05g012940.4 Solanum lycopersicum HOM05D003201 ORTHO05D008914 2.4e-86 323.2 277 57.4
Sp7g18670 Schrenkiella parvula HOM05D003201 ORTHO05D008914 3.2e-86 322.8 278 59.4
RcHm_v2.0_Chr6g0305311 Rosa chinensis HOM05D003201 ORTHO05D008914 4.2e-86 322.4 280 57.9
SalBow8G4280 Salvia bowleyana HOM05D003201 ORTHO05D008914 4.2e-86 322.4 279 55.9
AL7G33570 Arabidopsis lyrata HOM05D003201 ORTHO05D008914 5.4e-86 322.0 278 59.0
Thhalv10025951m.g Eutrema salsugineum HOM05D003201 ORTHO05D008914 5.4e-86 322.0 278 57.6
BraA01t01146Z Brassica rapa HOM05D003201 ORTHO05D008914 7.1e-86 321.6 290 57.2
Cc11_g12550 Coffea canephora HOM05D003201 ORTHO05D008914 7.1e-86 321.6 282 59.2
Actinidia29333 Actinidia chinensis HOM05D003201 ORTHO05D008914 9.3e-86 321.2 278 57.2
AT4G20325 Arabidopsis thaliana HOM05D003201 ORTHO05D008914 9.3e-86 321.2 278 57.9
Ciclev10016172m.g Citrus clementina HOM05D003201 ORTHO05D008914 9.3e-86 321.2 283 58.7
FvH4_2g36540 Fragaria vesca HOM05D003201 ORTHO05D008914 9.3e-86 321.2 282 57.8
Carub.0007s2085 Capsella rubella HOM05D003201 ORTHO05D008914 1.2e-85 320.9 278 59.4
AUR62028026 Chenopodium quinoa HOM05D003201 ORTHO05D008914 1.6e-85 320.5 283 56.9
BcaNung03501 Brassica carinata HOM05D003201 ORTHO05D008914 2.7e-85 319.7 278 57.9
C07p50860 Brassica napus HOM05D000936 ORTHO05D008914 2.7e-85 319.7 278 57.9
CARHR227150 Cardamine hirsuta HOM05D003201 ORTHO05D008914 2.7e-85 319.7 281 58.4
THA.LOC104811993 Tarenaya hassleriana HOM05D003201 ORTHO05D008914 2.7e-85 319.7 275 58.5
C01p14340 Brassica napus HOM05D003201 ORTHO05D008914 3.5e-85 319.3 277 57.8
SGA_v2.0_scaffold45G16974 Striga asiatica HOM05D003201 ORTHO05D008914 3.5e-85 319.3 276 57.2
BolC1t01393H Brassica oleracea HOM05D000280 ORTHO05D004510 4.6e-85 318.9 294 56.1
Dinv37468 Davidia involucrata HOM05D003201 ORTHO05D008914 4.6e-85 318.9 218 68.3
BraA03t14319Z Brassica rapa HOM05D003201 ORTHO05D008914 1.8e-84 317.0 273 59.3
BcaC06g30651 Brassica carinata HOM05D003201 ORTHO05D008914 2.3e-84 316.6 278 57.9
Potri.006G280600 Populus trichocarpa HOM05D003201 ORTHO05D008914 3.9e-84 315.8 279 60.9
A01p12040 Brassica napus HOM05D003201 ORTHO05D008914 6.7e-84 315.1 275 58.2
DCAR_002183 Daucus carota HOM05D003201 ORTHO05D008914 6.7e-84 315.1 277 58.1
BolC7t45584H Brassica oleracea HOM05D000936 ORTHO05D008914 1.1e-83 314.3 278 57.6
Eucgr.E04307 Eucalyptus grandis HOM05D003201 ORTHO05D008914 1.9e-83 313.5 278 58.3
FAN15G0760 Fragaria x ananassa HOM05D003201 ORTHO05D008914 4.3e-83 312.4 282 56.7
A03p52400 Brassica napus HOM05D000936 ORTHO05D008914 5.6e-83 312.0 278 57.6
Aa31LG6G2740 Aethionema arabicum HOM05D003201 ORTHO05D008914 2.8e-82 309.7 277 57.8
TWI18G0285 Tripterygium wilfordii HOM05D003201 ORTHO05D008914 3.7e-82 309.3 269 58.0
PSO782G1293 Papaver somniferum HOM05D003201 ORTHO05D008914 5.8e-80 302.0 276 56.5
Atru.BG.264.p Acer truncatum HOM05D003201 ORTHO05D008914 3.8e-79 299.3 266 56.8
HanXRQChr15g0468831 Helianthus annuus HOM05D003201 ORTHO05D008914 4.9e-79 298.9 279 54.5
PGR042G2091 Punica granatum HOM05D003201 ORTHO05D008914 4.6e-77 292.4 283 55.1
Rhsim07G0174100 Rhododendron simsii HOM05D003201 ORTHO05D008914 8.7e-76 288.1 372 44.6
ECA233G2337 Erigeron canadensis HOM05D004148 ORTHO05D004709 3.3e-75 286.2 255 56.1
BcaNung03722 Brassica carinata HOM05D000936 ORTHO05D001411 2.8e-74 283.1 278 53.2
Lsat_1_v5_gn_5_73181 Lactuca sativa HOM05D003201 ORTHO05D008914 5.3e-73 278.9 268 52.6
FAN20G1097 Fragaria x ananassa HOM05D000163 ORTHO05D008914 1.1e-70 271.2 252 56.0
AUR62020698 Chenopodium quinoa HOM05D003201 ORTHO05D008914 2.5e-70 270.0 283 51.6
ATR0686G110 Amborella trichopoda HOM05D003201 ORTHO05D008914 2.7e-69 266.5 239 55.6
HPP92_024271 Vanilla planifolia HOM05D003201 ORTHO05D008914 5.1e-68 262.3 253 54.5
Sabra06G0217200 Salix brachista HOM05D002037 ORTHO05D005261 1.3e-66 257.7 259 52.9
Sc23g0004340 Simmondsia chinensis HOM05D003201 ORTHO05D008914 6.9e-65 251.9 209 57.4
SEGI_35572 Sequoiadendron giganteum HOM05D003201 ORTHO05D008914 4.2e-62 242.7 279 46.2
vmacro05085 Vaccinium macrocarpon HOM05D003201 ORTHO05D008914 2.3e-60 236.9 497 33.8
TAR636G2614 Trochodendron aralioides HOM05D003201 ORTHO05D008914 5.1e-60 235.7 157 67.5
Potri.006G281101 Populus trichocarpa HOM05D003201 ORTHO05D008914 7.2e-54 215.3 165 65.5
Sed0017242 Sechium edule HOM05D003201 ORTHO05D008914 1.2e-53 214.5 186 63.4
Phvul.009G102700 Phaseolus vulgaris HOM05D003201 ORTHO05D008914 1.1e-51 208.0 340 42.6
FAN27G2114 Fragaria x ananassa HOM05D000163 ORTHO05D000219 3.3e-51 206.5 220 53.2
Mapoly0037s0034 Marchantia polymorpha HOM05D003201 ORTHO05D008914 3.7e-50 203.0 225 45.8
unitig_32.g11042 Utricularia gibba HOM05D003201 ORTHO05D008914 5.3e-49 199.1 219 48.4
AagrBONN_evm.TU.Sc2ySwM_344.2003 Anthoceros agrestis HOM05D003201 ORTHO05D008914 3.5e-48 196.4 214 43.9
SHI31610 Sapria himalayana HOM05D003201 ORTHO05D008914 1.8e-41 174.1 110 68.2
SMO115G0061 Selaginella moellendorffii HOM05D003201 ORTHO05D008914 7.0e-41 172.2 209 38.8
Pp3c10_22770 Physcomitrium patens HOM05D003201 ORTHO05D008914 5.9e-40 169.1 182 44.0
Zm00001eb079750 Zea mays HOM05D003201 ORTHO05D008914 1.1e-38 164.9 186 50.5
Nn7g38306 Nelumbo nucifera HOM05D003201 ORTHO05D008914 1.2e-32 144.8 108 59.3
MD08G1125300 Malus domestica HOM05D003201 ORTHO05D008914 6.8e-28 129.0 123 52.8
CDE05G1961 Ceratophyllum demersum HOM05D003201 ORTHO05D008914 8.8e-28 128.6 142 51.4
TPR.G12326 Trifolium pratense HOM05D003201 ORTHO05D008914 1.3e-26 124.8 86 69.8
Phvul.009G103000 Phaseolus vulgaris HOM05D003201 ORTHO05D008914 4.1e-25 119.8 90 66.7
Os04g0476400 Oryza sativa ssp. japonica HOM05D003201 ORTHO05D008914 1.0e-23 115.2 95 56.8
COL.COLO4_10365 Corchorus olitorius HOM05D003201 ORTHO05D008914 1.9e-22 110.9 176 40.3
Hma1.2p1_1357F.1_g277905 Hydrangea macrophylla HOM05D003201 ORTHO05D008914 1.7e-18 97.8 70 61.4
CBR_g23989 Chara braunii HOM05D003201 ORTHO05D008914 2.3e-15 87.4 68 52.9
PRCOL_00004174 Prasinoderma coloniale HOM05D003201 ORTHO05D008914 1.1e-09 68.6 198 26.8
Cre07.g320800 Chlamydomonas reinhardtii HOM05D003201 ORTHO05D008914 2.4e-09 67.4 68 41.2


User provided reference genes

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