Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.04G075600 Glycine max HOM05D021496 ORTHO05D022761 1.7e-51 205.7 104 100.0
Glyma.06G076800 Glycine max HOM05D021496 ORTHO05D022761 9.0e-40 166.8 104 83.7
VMungo1143G0002 Vigna mungo HOM05D021496 ORTHO05D022761 6.9e-32 140.6 100 69.0
Phvul.009G101400 Phaseolus vulgaris HOM05D021496 ORTHO05D022761 1.2e-28 129.8 100 69.0
Lj1g0012048 Lotus japonicus HOM05D021496 ORTHO05D022761 1.0e-27 126.7 99 62.6
Lalb_Chr08g0243531 Lupinus albus HOM05D021496 ORTHO05D022761 1.9e-13 79.3 94 50.0
RcHm_v2.0_Chr6g0305001 Rosa chinensis HOM05D001798 ORTHO05D005040 8.2e-09 63.9 111 34.2
Manes.03G004000 Manihot esculenta HOM05D001798 ORTHO05D005040 1.1e-08 63.5 90 43.3
ClCG06G013270 Citrullus lanatus HOM05D001798 ORTHO05D005040 4.1e-08 61.6 101 39.6
QL12p025154 Quercus lobata HOM05D001798 ORTHO05D005040 4.1e-08 61.6 98 44.9
Duzib170G0014 Durio zibethinus HOM05D001798 ORTHO05D005040 6.9e-08 60.8 98 41.8
COL.COLO4_19032 Corchorus olitorius HOM05D001798 ORTHO05D005040 9.1e-08 60.5 99 41.4
FAN20G2332 Fragaria x ananassa HOM05D001798 ORTHO05D005040 9.1e-08 60.5 103 35.9
Manes.16G135500 Manihot esculenta HOM05D001798 ORTHO05D005040 2.0e-07 59.3 96 40.6
Potri.018G094100 Populus trichocarpa HOM05D001798 ORTHO05D005040 2.6e-07 58.9 98 39.8
CSS0007301 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 3.4e-07 58.5 111 39.6
Duzib168G0008 Durio zibethinus HOM05D001798 ORTHO05D005040 4.5e-07 58.2 97 39.2
MSTRG.26226 Avicennia marina HOM05D001798 ORTHO05D005040 5.9e-07 57.8 101 40.6
Haze_21745 Corylus avellana HOM05D001798 ORTHO05D005040 5.9e-07 57.8 96 40.6
Duzib187G0913 Durio zibethinus HOM05D001798 ORTHO05D005040 7.7e-07 57.4 97 39.2
Thecc.09G007300 Theobroma cacao HOM05D001798 ORTHO05D005040 7.7e-07 57.4 63 46.0
Atru.chr7.661 Acer truncatum HOM05D001798 ORTHO05D005040 1.0e-06 57.0 101 38.6
Glyma.13G095700 Glycine max HOM05D001798 ORTHO05D005040 1.0e-06 57.0 108 38.9
Dinv41255 Davidia involucrata HOM05D001798 ORTHO05D004054 1.3e-06 56.6 99 41.4
CiPaw.07G191500 Carya illinoinensis HOM05D001798 ORTHO05D005040 1.7e-06 56.2 109 39.4
Glyma.17G064300 Glycine max HOM05D001798 ORTHO05D005040 1.7e-06 56.2 109 38.5
MELO3C017469.2 Cucumis melo HOM05D001798 ORTHO05D005040 2.2e-06 55.8 100 35.0
FAN22G0641 Fragaria x ananassa HOM05D001798 ORTHO05D005040 2.2e-06 55.8 113 38.1
RcHm_v2.0_Chr1g0336341 Rosa chinensis HOM05D001798 ORTHO05D005040 2.2e-06 55.8 110 32.7
Manes.14G151300 Manihot esculenta HOM05D001798 ORTHO05D005040 2.9e-06 55.5 101 37.6
Prupe.1G087800 Prunus persica HOM05D001798 ORTHO05D005040 3.8e-06 55.1 101 39.6
FAN15G2712 Fragaria x ananassa HOM05D001798 ORTHO05D005040 5.0e-06 54.7 108 32.4
CSS0005198 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 6.5e-06 54.3 108 38.0
CSS0011185 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 6.5e-06 54.3 108 38.0
Haze_21741 Corylus avellana HOM05D001798 ORTHO05D005040 6.5e-06 54.3 95 41.1
Haze_21742 Corylus avellana HOM05D001798 ORTHO05D005040 6.5e-06 54.3 95 41.1
CsaV3_1G031530 Cucumis sativus L. HOM05D001798 ORTHO05D005040 6.5e-06 54.3 100 33.0
MD12G1161200 Malus domestica HOM05D001798 ORTHO05D005040 6.5e-06 54.3 101 39.6
Thecc.09G171700 Theobroma cacao HOM05D001798 ORTHO05D005040 6.5e-06 54.3 96 37.5
FvH4_4g09360 Fragaria vesca HOM05D001798 ORTHO05D005040 8.5e-06 53.9 113 38.9
Psat4g011600 Pisum sativum HOM05D001798 ORTHO05D005040 8.5e-06 53.9 114 37.7


User provided reference genes

Program Settings