Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.04G070800 Glycine max HOM05D007522 ORTHO05D009518 1.5e-39 165.6 79 100.0
Glyma.06G072500 Glycine max HOM05D007522 ORTHO05D009518 1.8e-16 89.0 51 86.3
Lj1g0002015 Lotus japonicus HOM05D007522 ORTHO05D009518 1.2e-15 86.3 52 82.7
VMungo1309G1471 Vigna mungo HOM05D007522 ORTHO05D009518 1.5e-15 85.9 76 60.5
arahy.Tifrunner.gnm1.ann1.EE81AI Arachis hypogaea HOM05D007522 ORTHO05D009518 2.6e-15 85.1 61 65.6
arahy.Tifrunner.gnm1.ann1.J4BCXN Arachis hypogaea HOM05D007522 ORTHO05D009518 2.6e-15 85.1 61 65.6
Phvul.009G097000 Phaseolus vulgaris HOM05D007522 ORTHO05D009518 3.4e-15 84.7 55 78.2
Ca_15704_v3 Cicer arietinum L. HOM05D000186 ORTHO05D001124 1.3e-14 82.8 53 77.4
VMungo1309G0092 Vigna mungo HOM05D007522 ORTHO05D009518 2.2e-14 82.0 52 76.9
Sabra06G0193900 Salix brachista HOM05D007522 ORTHO05D009518 3.8e-14 81.3 71 56.3
TPR.G34679 Trifolium pratense HOM05D007522 ORTHO05D009518 4.9e-14 80.9 51 78.4
Cpa.g.sc91.26 Carica papaya HOM05D007522 ORTHO05D009518 8.4e-14 80.1 54 66.7
FvH4_2g30000 Fragaria vesca HOM05D007522 ORTHO05D009518 8.4e-14 80.1 62 58.1
FAN24G0147 Fragaria x ananassa HOM05D007522 ORTHO05D009518 1.4e-13 79.3 53 67.9
FAN15G2839 Fragaria x ananassa HOM05D007522 ORTHO05D009518 1.9e-13 79.0 62 58.1
RcHm_v2.0_Chr6g0312911 Rosa chinensis HOM05D007522 ORTHO05D009518 4.2e-13 77.8 62 56.5
Duzib187G1360 Durio zibethinus HOM05D007522 ORTHO05D009518 5.4e-13 77.4 62 61.3
Medtr3g108530 Medicago truncatula HOM05D007522 ORTHO05D009518 5.4e-13 77.4 59 64.4
Potri.006G247900 Populus trichocarpa HOM05D007522 ORTHO05D009518 7.1e-13 77.0 61 60.7
GSVIVG01035795001 Vitis vinifera HOM05D007522 ORTHO05D009518 7.1e-13 77.0 62 59.7
MD15G1116400 Malus domestica HOM05D007522 ORTHO05D009518 9.3e-13 76.6 62 54.8
Gohir.A13G204200 Gossypium hirsutum HOM05D007522 ORTHO05D009518 1.6e-12 75.9 51 68.6
Gohir.D13G209500 Gossypium hirsutum HOM05D007522 ORTHO05D009518 1.6e-12 75.9 51 68.6
Gorai.013G238600 Gossypium raimondii HOM05D007522 ORTHO05D009518 1.6e-12 75.9 51 68.6
MD08G1138500 Malus domestica HOM05D007522 ORTHO05D009518 1.6e-12 75.9 62 54.8
Prupe.1G467900 Prunus persica HOM05D007522 ORTHO05D009518 1.6e-12 75.9 62 54.8
Sed0015375 Sechium edule HOM05D007522 ORTHO05D009518 1.6e-12 75.9 51 66.7
QL12p031480 Quercus lobata HOM05D007522 ORTHO05D009518 4.6e-12 74.3 61 55.7
COL.COLO4_24044 Corchorus olitorius HOM05D007522 ORTHO05D009518 1.0e-11 73.2 57 61.4
CsaV3_2G031690 Cucumis sativus L. HOM05D007522 ORTHO05D009518 1.0e-11 73.2 61 55.7
Nn8g39310 Nelumbo nucifera HOM05D007522 ORTHO05D009518 1.8e-11 72.4 51 68.6
Manes.03G065616 Manihot esculenta HOM05D007522 ORTHO05D009518 3.0e-11 71.6 51 66.7
Actinidia13430 Actinidia chinensis HOM05D007522 ORTHO05D009518 1.1e-10 69.7 61 54.1
Atru.chr7.2341 Acer truncatum HOM05D007522 ORTHO05D009518 1.9e-10 68.9 52 61.5
CiPaw.07G218500 Carya illinoinensis HOM05D007522 ORTHO05D009518 2.5e-10 68.6 61 54.1
Lalb_Chr08g0243841 Lupinus albus HOM05D007522 ORTHO05D009518 2.5e-10 68.6 52 67.3
MELO3C011219.2 Cucumis melo HOM05D007522 ORTHO05D009518 3.3e-10 68.2 61 52.5
Ciclev10009234m.g Citrus clementina HOM05D007522 ORTHO05D009518 1.3e-09 66.2 61 52.5
TAR383G0977 Trochodendron aralioides HOM05D007522 ORTHO05D009518 1.3e-09 66.2 51 62.7
C01p06400 Brassica napus HOM05D007522 ORTHO05D009518 4.8e-09 64.3 68 42.6
BolC1t00636H Brassica oleracea HOM05D007522 ORTHO05D009518 4.8e-09 64.3 68 42.6
Aa31LG4G11730 Aethionema arabicum HOM05D007522 ORTHO05D009518 1.4e-08 62.8 58 48.3
BcaC09g52047 Brassica carinata HOM05D007522 ORTHO05D009518 1.4e-08 62.8 51 51.0
A01p05830 Brassica napus HOM05D007522 ORTHO05D009518 1.4e-08 62.8 51 52.9
PSO782G1743 Papaver somniferum HOM05D007522 ORTHO05D009518 1.8e-08 62.4 62 46.8
THA.LOC104819887 Tarenaya hassleriana HOM05D007522 ORTHO05D009518 1.8e-08 62.4 51 52.9
CSS0007980 Camellia sinensis var. sinensis HOM05D007522 ORTHO05D009518 2.4e-08 62.0 61 52.5
BraA01t00551Z Brassica rapa HOM05D007522 ORTHO05D009518 3.1e-08 61.6 51 51.0
HanXRQChr13g0402121 Helianthus annuus HOM05D007522 ORTHO05D009518 6.9e-08 60.5 51 60.8
AL7G19200 Arabidopsis lyrata HOM05D007522 ORTHO05D009518 9.0e-08 60.1 61 42.6
CANSAT11G2673 Cannabis sativa HOM05D007522 ORTHO05D009518 9.0e-08 60.1 79 41.8
Cc11_g01290 Coffea canephora HOM05D007522 ORTHO05D009518 9.0e-08 60.1 52 53.8
PSO063G3677 Papaver somniferum HOM05D007522 ORTHO05D009518 1.5e-07 59.3 55 49.1
AT4G32560 Arabidopsis thaliana HOM05D007522 ORTHO05D009518 3.4e-07 58.2 61 39.3
Eucgr.C02850 Eucalyptus grandis HOM05D007522 ORTHO05D009518 4.5e-07 57.8 58 46.6
PGR044G0714 Punica granatum HOM05D007522 ORTHO05D009518 4.5e-07 57.8 51 51.0
ECA233G0736 Erigeron canadensis HOM05D007522 ORTHO05D009518 5.8e-07 57.4 51 56.9
Sp7g30340 Schrenkiella parvula HOM05D007522 ORTHO05D009518 5.8e-07 57.4 51 49.0
Carub.0007s0799 Capsella rubella HOM05D007522 ORTHO05D009518 7.6e-07 57.0 61 41.0
Sopen06g006080 Solanum pennellii HOM05D007522 ORTHO05D009518 9.9e-07 56.6 61 49.2
Eucgr.C02839 Eucalyptus grandis HOM05D007522 ORTHO05D009518 1.3e-06 56.2 58 44.8
Thhalv10025779m.g Eutrema salsugineum HOM05D007522 ORTHO05D009518 1.7e-06 55.8 51 47.1
Solyc06g011403.1 Solanum lycopersicum HOM05D007522 ORTHO05D009518 1.7e-06 55.8 61 47.5
CARHR240530 Cardamine hirsuta HOM05D007522 ORTHO05D009518 2.2e-06 55.5 51 45.1
Oeu014660.1 Olea europaea HOM05D007522 ORTHO05D009518 2.2e-06 55.5 51 54.9
ATR0083G062 Amborella trichopoda HOM05D007522 ORTHO05D009518 2.9e-06 55.1 60 45.0
AUR62024852 Chenopodium quinoa HOM05D007522 ORTHO05D009518 6.4e-06 53.9 52 53.8
Lsat_1_v5_gn_6_22860 Lactuca sativa HOM05D007522 ORTHO05D009518 6.4e-06 53.9 51 52.9


User provided reference genes

Program Settings