Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.04G070700 Glycine max HOM05D007522 ORTHO05D009518 1.0e-70 270.0 141 100.0
Glyma.06G072500 Glycine max HOM05D007522 ORTHO05D009518 1.0e-54 216.9 134 84.3
VMungo1309G1471 Vigna mungo HOM05D007522 ORTHO05D009518 1.5e-45 186.4 133 75.2
Phvul.009G097000 Phaseolus vulgaris HOM05D007522 ORTHO05D009518 2.8e-44 182.2 128 75.0
Lalb_Chr08g0243841 Lupinus albus HOM05D007522 ORTHO05D009518 3.2e-40 168.7 134 66.4
arahy.Tifrunner.gnm1.ann1.J4BCXN Arachis hypogaea HOM05D007522 ORTHO05D009518 1.9e-37 159.5 134 61.9
Lj1g0002015 Lotus japonicus HOM05D007522 ORTHO05D009518 7.4e-37 157.5 136 61.8
Ca_15704_v3 Cicer arietinum L. HOM05D000186 ORTHO05D001124 3.7e-36 155.2 129 64.3
TPR.G34679 Trifolium pratense HOM05D007522 ORTHO05D009518 2.4e-35 152.5 134 57.5
Medtr3g108530 Medicago truncatula HOM05D007522 ORTHO05D009518 6.9e-35 151.0 136 59.6
Psat0s1782g0120 Pisum sativum HOM05D007522 ORTHO05D009518 3.2e-32 142.1 117 60.7
arahy.Tifrunner.gnm1.ann1.EE81AI Arachis hypogaea HOM05D007522 ORTHO05D009518 5.3e-27 124.8 100 63.0
Haze_21613 Corylus avellana HOM05D007522 ORTHO05D009518 2.0e-26 122.9 126 52.4
QL12p031480 Quercus lobata HOM05D007522 ORTHO05D009518 2.6e-26 122.5 128 50.8
CiPaw.07G218500 Carya illinoinensis HOM05D007522 ORTHO05D009518 9.4e-24 114.0 130 49.2
Thecc.09G145600 Theobroma cacao HOM05D007522 ORTHO05D009518 7.9e-23 110.9 128 46.9
COL.COLO4_24044 Corchorus olitorius HOM05D007522 ORTHO05D009518 1.0e-22 110.5 133 45.9
TAR383G0977 Trochodendron aralioides HOM05D007522 ORTHO05D009518 1.0e-22 110.5 132 45.5
Gohir.D13G209500 Gossypium hirsutum HOM05D007522 ORTHO05D009518 6.7e-22 107.8 133 46.6
Gohir.A13G204200 Gossypium hirsutum HOM05D007522 ORTHO05D009518 1.5e-21 106.7 133 45.9
PGR044G0714 Punica granatum HOM05D007522 ORTHO05D009518 2.6e-21 105.9 133 45.1
Dinv30202 Davidia involucrata HOM05D007522 ORTHO05D009518 4.4e-21 105.1 129 45.7
Gorai.013G238600 Gossypium raimondii HOM05D007522 ORTHO05D009518 7.4e-21 104.4 127 46.5
FvH4_2g30000 Fragaria vesca HOM05D007522 ORTHO05D009518 9.7e-21 104.0 137 42.3
FAN27G1610 Fragaria x ananassa HOM05D007522 ORTHO05D009518 9.7e-21 104.0 137 42.3
Potri.006G247900 Populus trichocarpa HOM05D007522 ORTHO05D009518 1.7e-20 103.2 131 46.6
CARHR240530 Cardamine hirsuta HOM05D007522 ORTHO05D009518 2.2e-20 102.8 128 45.3
CSS0007980 Camellia sinensis var. sinensis HOM05D007522 ORTHO05D009518 3.7e-20 102.1 128 45.3
FAN15G2839 Fragaria x ananassa HOM05D007522 ORTHO05D009518 3.7e-20 102.1 137 41.6
RcHm_v2.0_Chr6g0312911 Rosa chinensis HOM05D007522 ORTHO05D009518 6.3e-20 101.3 137 41.6
FAN24G0147 Fragaria x ananassa HOM05D007522 ORTHO05D009518 8.2e-20 100.9 137 41.6
Rhsim02G0189000 Rhododendron simsii HOM05D007522 ORTHO05D009518 8.2e-20 100.9 128 43.8
Eucgr.L02345 Eucalyptus grandis HOM05D007522 ORTHO05D009518 1.8e-19 99.8 124 42.7
THA.LOC104819887 Tarenaya hassleriana HOM05D007522 ORTHO05D009518 1.8e-19 99.8 132 41.7
Oeu014660.1 Olea europaea HOM05D007522 ORTHO05D009518 3.1e-19 99.0 127 42.5
AL7G19200 Arabidopsis lyrata HOM05D007522 ORTHO05D009518 5.3e-19 98.2 132 43.9
Eucgr.C02854 Eucalyptus grandis HOM05D007522 ORTHO05D009518 5.3e-19 98.2 125 41.6
MD08G1138600 Malus domestica HOM05D007522 ORTHO05D009518 5.3e-19 98.2 129 45.0
Prupe.1G467900 Prunus persica HOM05D007522 ORTHO05D009518 5.3e-19 98.2 132 43.2
Carub.0007s0799 Capsella rubella HOM05D007522 ORTHO05D009518 6.9e-19 97.8 132 43.2
Thhalv10025779m.g Eutrema salsugineum HOM05D007522 ORTHO05D009518 9.1e-19 97.4 132 43.2
Eucgr.C02839 Eucalyptus grandis HOM05D007522 ORTHO05D009518 1.2e-18 97.1 125 40.0
Eucgr.C02843 Eucalyptus grandis HOM05D007522 ORTHO05D009518 2.0e-18 96.3 125 40.8
Sabra06G0193900 Salix brachista HOM05D007522 ORTHO05D009518 2.0e-18 96.3 130 43.1
C01p06400 Brassica napus HOM05D007522 ORTHO05D009518 3.4e-18 95.5 130 46.2
BolC1t00636H Brassica oleracea HOM05D007522 ORTHO05D009518 3.4e-18 95.5 130 46.2
Sp7g30340 Schrenkiella parvula HOM05D007522 ORTHO05D009518 5.9e-18 94.7 128 42.2
Aa31LG4G11730 Aethionema arabicum HOM05D007522 ORTHO05D009518 2.2e-17 92.8 148 40.5
Manes.03G065616 Manihot esculenta HOM05D007522 ORTHO05D009518 2.2e-17 92.8 129 41.9
Actinidia13430 Actinidia chinensis HOM05D007522 ORTHO05D009518 3.8e-17 92.0 127 41.7
BraA01t00551Z Brassica rapa HOM05D007522 ORTHO05D009518 3.8e-17 92.0 130 44.6
GSVIVG01035795001 Vitis vinifera HOM05D007522 ORTHO05D009518 3.8e-17 92.0 128 36.7
BcaC09g52047 Brassica carinata HOM05D007522 ORTHO05D009518 6.5e-17 91.3 130 43.8
A01p05830 Brassica napus HOM05D007522 ORTHO05D009518 6.5e-17 91.3 130 44.6
MSTRG.25867 Avicennia marina HOM05D007522 ORTHO05D009518 8.5e-17 90.9 127 41.7
Eucgr.C02850 Eucalyptus grandis HOM05D007522 ORTHO05D009518 1.1e-16 90.5 124 38.7
MD15G1116400 Malus domestica HOM05D007522 ORTHO05D009518 1.9e-16 89.7 131 39.7
AT4G32560 Arabidopsis thaliana HOM05D007522 ORTHO05D009518 4.2e-16 88.6 128 40.6
MELO3C011219.2 Cucumis melo HOM05D007522 ORTHO05D009518 4.2e-16 88.6 132 40.2
CsaV3_2G031690 Cucumis sativus L. HOM05D007522 ORTHO05D009518 9.4e-16 87.4 128 41.4
Cfa021321 Carpinus fangiana HOM05D007522 ORTHO05D009518 4.7e-15 85.1 97 46.4
Ciclev10009234m.g Citrus clementina HOM05D007522 ORTHO05D009518 4.7e-15 85.1 127 39.4
Sed0015375 Sechium edule HOM05D007522 ORTHO05D009518 1.0e-14 84.0 129 36.4
Migut.A00284 Erythranthe guttata HOM05D007522 ORTHO05D009518 1.4e-14 83.6 127 39.4
Peaxi162Scf00267g00097 Petunia axillaris HOM05D007522 ORTHO05D009518 6.7e-14 81.3 133 40.6
HanXRQChr13g0402121 Helianthus annuus HOM05D007522 ORTHO05D009518 2.0e-13 79.7 132 34.8
Duzib187G1360 Durio zibethinus HOM05D007522 ORTHO05D009518 1.3e-12 77.0 90 45.6
EL10Ac2g02553 Beta vulgaris HOM05D007522 ORTHO05D009518 6.3e-12 74.7 130 35.4
Cc11_g01290 Coffea canephora HOM05D007522 ORTHO05D009518 8.2e-12 74.3 115 39.1
ATR0083G062 Amborella trichopoda HOM05D007522 ORTHO05D009518 1.8e-11 73.2 133 30.8
ECA233G0736 Erigeron canadensis HOM05D007522 ORTHO05D009518 3.1e-11 72.4 132 34.1
Lsat_1_v5_gn_6_22860 Lactuca sativa HOM05D007522 ORTHO05D009518 3.1e-11 72.4 110 40.0
Sopen06g006080 Solanum pennellii HOM05D007522 ORTHO05D009518 1.6e-10 70.1 131 33.6
vmacro11126 Vaccinium macrocarpon HOM05D007522 ORTHO05D009518 2.6e-10 69.3 90 41.1
PSO782G1743 Papaver somniferum HOM05D007522 ORTHO05D009518 4.5e-10 68.6 128 39.1
Solyc06g011403.1 Solanum lycopersicum HOM05D007522 ORTHO05D009518 4.5e-10 68.6 131 32.8
AagrBONN_evm.TU.Sc2ySwM_117.2977 Anthoceros agrestis HOM05D007522 ORTHO05D009518 3.8e-09 65.5 120 33.3
PSO063G3677 Papaver somniferum HOM05D007522 ORTHO05D009518 3.8e-09 65.5 128 37.5
Aqoxy2G01954 Aquilegia oxysepala HOM05D007522 ORTHO05D009518 1.9e-08 63.2 137 31.4
Atru.chr7.2341 Acer truncatum HOM05D007522 ORTHO05D009518 5.5e-08 61.6 73 45.2
Glyma.17G090400 Glycine max HOM05D000059 ORTHO05D022504 1.2e-07 60.5 38 89.5
CANSAT11G2673 Cannabis sativa HOM05D007522 ORTHO05D009518 2.7e-07 59.3 86 41.9
Mapoly0015s0053 Marchantia polymorpha HOM05D007522 ORTHO05D009518 3.6e-07 58.9 120 30.8
Pp3c10_19840 Physcomitrium patens HOM05D007522 ORTHO05D009518 1.0e-06 57.4 120 29.2


User provided reference genes

Program Settings