Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.04G070000 Glycine max HOM05D007454 ORTHO05D009382 4.0e-81 304.7 151 100.0
Glyma.06G072000 Glycine max HOM05D007454 ORTHO05D009382 6.9e-65 250.8 151 84.1
Phvul.009G096400 Phaseolus vulgaris HOM05D007454 ORTHO05D009382 1.8e-52 209.5 152 74.3
VMungo1309G0733 Vigna mungo HOM05D007454 ORTHO05D009382 2.5e-38 162.5 122 68.9
Lj1g0018180 Lotus japonicus HOM05D007454 ORTHO05D009382 1.5e-32 143.3 168 53.6
arahy.Tifrunner.gnm1.ann1.AC8RV3 Arachis hypogaea HOM05D007454 ORTHO05D009382 1.7e-31 139.8 159 54.1
Medtr3g107890 Medicago truncatula HOM05D007454 ORTHO05D009382 1.7e-31 139.8 161 51.6
arahy.Tifrunner.gnm1.ann1.X4UCF1 Arachis hypogaea HOM05D007454 ORTHO05D009382 2.9e-31 139.0 159 54.7
Lalb_Chr23g0268861 Lupinus albus HOM05D007454 ORTHO05D009382 8.8e-28 127.5 161 50.9
Ca_15708_v3 Cicer arietinum L. HOM05D007454 ORTHO05D009382 4.4e-27 125.2 165 46.7
TPR.G27330 Trifolium pratense HOM05D007454 ORTHO05D009382 2.4e-25 119.4 174 46.6
CiPaw.08G014500 Carya illinoinensis HOM05D007454 ORTHO05D009382 2.5e-22 109.4 154 40.9
CiPaw.07G219000 Carya illinoinensis HOM05D007454 ORTHO05D009382 6.7e-20 101.3 157 43.3
CSS0001844 Camellia sinensis var. sinensis HOM05D007454 ORTHO05D009382 1.1e-19 100.5 150 41.3
QL12p031592 Quercus lobata HOM05D007454 ORTHO05D009382 2.0e-19 99.8 151 41.7
Potri.006G248300 Populus trichocarpa HOM05D007454 ORTHO05D009382 7.4e-19 97.8 151 41.7
TPR.G34694 Trifolium pratense HOM05D007454 ORTHO05D009382 1.3e-18 97.1 162 45.1
Solyc08g067630.3 Solanum lycopersicum HOM05D007454 ORTHO05D009382 2.2e-18 96.3 143 42.7
Manes.03G018900 Manihot esculenta HOM05D007454 ORTHO05D009382 3.7e-18 95.5 149 42.3
Prupe.1G471000 Prunus persica HOM05D007454 ORTHO05D009382 4.8e-18 95.1 149 44.3
Atru.chr7.2345 Acer truncatum HOM05D007454 ORTHO05D009382 6.3e-18 94.7 156 43.6
Actinidia13275 Actinidia chinensis HOM05D007454 ORTHO05D009382 6.3e-18 94.7 152 38.2
Gorai.007G350400 Gossypium raimondii HOM05D007454 ORTHO05D009382 8.2e-18 94.4 149 41.6
Gohir.A11G304800 Gossypium hirsutum HOM05D007454 ORTHO05D009382 1.1e-17 94.0 149 41.6
Nitab4.5_0000125g0360 Nicotiana tabacum HOM05D007454 ORTHO05D009382 1.4e-17 93.6 149 40.3
Rhsim02G0189300 Rhododendron simsii HOM05D007454 ORTHO05D009382 2.4e-17 92.8 150 43.3
COL.COLO4_24027 Corchorus olitorius HOM05D007454 ORTHO05D009382 3.1e-17 92.4 152 38.2
Cfa013203 Carpinus fangiana HOM05D007454 ORTHO05D009382 7.0e-17 91.3 151 43.7
Nitab4.5_0003201g0010 Nicotiana tabacum HOM05D007454 ORTHO05D009382 7.0e-17 91.3 149 40.3
HanXRQChr01g0030031 Helianthus annuus HOM05D007454 ORTHO05D009382 1.2e-16 90.5 151 37.7
Haze_21608 Corylus avellana HOM05D007454 ORTHO05D009382 1.6e-16 90.1 151 41.1
FAN27G1093 Fragaria x ananassa HOM05D007454 ORTHO05D009382 1.6e-16 90.1 146 40.4
Gohir.D11G320200 Gossypium hirsutum HOM05D007454 ORTHO05D009382 2.0e-16 89.7 149 41.6
Manes.16G117700 Manihot esculenta HOM05D007454 ORTHO05D009382 2.0e-16 89.7 156 42.3
FAN15G1931 Fragaria x ananassa HOM05D007454 ORTHO05D009382 4.5e-16 88.6 146 41.8
PGSC0003DMG400002261 Solanum tuberosum HOM05D007454 ORTHO05D009382 4.5e-16 88.6 126 42.9
Sabra06G0194300 Salix brachista HOM05D007454 ORTHO05D009382 5.9e-16 88.2 153 41.2
Nn2g11862 Nelumbo nucifera HOM05D007454 ORTHO05D009382 1.0e-15 87.4 157 34.4
FvH4_2g29860 Fragaria vesca HOM05D007454 ORTHO05D009382 1.3e-15 87.0 146 40.4
FAN20G1122 Fragaria x ananassa HOM05D007454 ORTHO05D009382 1.3e-15 87.0 146 39.7
MD15G1117600 Malus domestica HOM05D007454 ORTHO05D009382 1.3e-15 87.0 150 40.0
Thecc.09G146500 Theobroma cacao HOM05D007454 ORTHO05D009382 1.3e-15 87.0 149 36.9
Lsat_1_v5_gn_1_45380 Lactuca sativa HOM05D007454 ORTHO05D009382 1.7e-15 86.7 154 35.7
Dinv11595 Davidia involucrata HOM05D007454 ORTHO05D009382 2.2e-15 86.3 119 46.2
FAN24G1693 Fragaria x ananassa HOM05D007454 ORTHO05D009382 2.2e-15 86.3 146 40.4
RcHm_v2.0_Chr6g0298931 Rosa chinensis HOM05D007454 ORTHO05D009382 3.8e-15 85.5 146 40.4
Actinidia29311 Actinidia chinensis HOM05D007454 ORTHO05D009382 5.0e-15 85.1 148 35.1
EL10Ac2g02557 Beta vulgaris HOM05D007454 ORTHO05D009382 8.5e-15 84.3 160 36.2
Cpa.g.sc603.1 Carica papaya HOM05D007454 ORTHO05D009382 8.5e-15 84.3 152 39.5
TWI34G0809 Tripterygium wilfordii HOM05D007454 ORTHO05D009382 8.5e-15 84.3 155 38.1
TAR383G0100 Trochodendron aralioides HOM05D007454 ORTHO05D009382 1.9e-14 83.2 157 38.2
Psat5g027000 Pisum sativum HOM05D007454 ORTHO05D009382 2.5e-14 82.8 68 61.8
CAN.G506.13 Capsicum annuum HOM05D007454 ORTHO05D009382 3.2e-14 82.4 143 39.9
ECA248G0251 Erigeron canadensis HOM05D007454 ORTHO05D009382 5.5e-14 81.6 152 38.2
Aqoxy7G01923 Aquilegia oxysepala HOM05D007454 ORTHO05D009382 1.6e-13 80.1 147 39.5
CARHR115660 Cardamine hirsuta HOM05D007454 ORTHO05D009382 2.1e-13 79.7 161 33.5
Cc11_g01380 Coffea canephora HOM05D007454 ORTHO05D009382 2.7e-13 79.3 158 37.3
Duzib150G0674 Durio zibethinus HOM05D007454 ORTHO05D009382 2.7e-13 79.3 115 42.6
Migut.A00288 Erythranthe guttata HOM05D007454 ORTHO05D009382 2.7e-13 79.3 148 36.5
AT2G25625 Arabidopsis thaliana HOM05D007454 ORTHO05D009382 3.6e-13 79.0 154 35.7
A04p19830 Brassica napus HOM05D007454 ORTHO05D009382 8.0e-13 77.8 156 34.6
Oeu032495.1 Olea europaea HOM05D007454 ORTHO05D009382 8.0e-13 77.8 147 36.7
BcaC02g08336 Brassica carinata HOM05D007454 ORTHO05D009382 1.0e-12 77.4 156 34.6
C04p55570 Brassica napus HOM05D007454 ORTHO05D009382 1.0e-12 77.4 156 34.6
BolC4t27081H Brassica oleracea HOM05D007454 ORTHO05D009382 1.0e-12 77.4 156 34.6
Ciclev10009811m.g Citrus clementina HOM05D007454 ORTHO05D009382 1.0e-12 77.4 147 34.7
MD08G1140700 Malus domestica HOM05D007454 ORTHO05D009382 1.0e-12 77.4 148 38.5
Hund25693 Selenicereus undatus HOM05D007454 ORTHO05D009382 1.0e-12 77.4 156 37.8
THA.LOC104803822 Tarenaya hassleriana HOM05D007454 ORTHO05D009382 1.0e-12 77.4 153 35.3
BraA04t17571Z Brassica rapa HOM05D007454 ORTHO05D009382 1.8e-12 76.6 156 34.0
Sopen08g021580 Solanum pennellii HOM05D007454 ORTHO05D009382 1.8e-12 76.6 106 42.5
AL4G17110 Arabidopsis lyrata HOM05D007454 ORTHO05D009382 4.0e-12 75.5 154 33.8
Sp4g05200 Schrenkiella parvula HOM05D007454 ORTHO05D009382 5.2e-12 75.1 156 37.2
ClCG05G017140 Citrullus lanatus HOM05D007454 ORTHO05D009382 6.7e-12 74.7 157 38.2
BcaB06g28081 Brassica carinata HOM05D007454 ORTHO05D009382 1.5e-11 73.6 156 33.3
TAR626G1515 Trochodendron aralioides HOM05D007454 ORTHO05D009382 1.5e-11 73.6 148 38.5
DCAR_001472 Daucus carota HOM05D007454 ORTHO05D009382 2.0e-11 73.2 149 33.6
SalBow4G3079 Salvia bowleyana HOM05D007454 ORTHO05D009382 4.4e-11 72.0 63 58.7
Carub.0004s0541 Capsella rubella HOM05D007454 ORTHO05D009382 1.7e-10 70.1 156 32.7
Sed0003243 Sechium edule HOM05D007454 ORTHO05D009382 3.7e-10 68.9 167 32.3
Sed0012550 Sechium edule HOM05D007454 ORTHO05D009382 4.8e-10 68.6 158 36.1
Sc09g0008740 Simmondsia chinensis HOM05D007454 ORTHO05D009382 4.8e-10 68.6 112 37.5
ClCG08G012990 Citrullus lanatus HOM05D007454 ORTHO05D009382 1.1e-09 67.4 153 35.3
Thhalv10000347m.g Eutrema salsugineum HOM05D007454 ORTHO05D009382 1.1e-09 67.4 154 34.4
CsaV3_2G031720 Cucumis sativus L. HOM05D007454 ORTHO05D009382 1.4e-09 67.0 136 36.8
unitig_748.g8205 Utricularia gibba HOM05D007454 ORTHO05D009382 1.4e-09 67.0 149 32.9
CDE07G1568 Ceratophyllum demersum HOM05D007454 ORTHO05D009382 1.8e-09 66.6 135 37.0
Zm00001eb296620 Zea mays HOM05D007454 ORTHO05D009382 2.4e-09 66.2 114 34.2
CsaV3_3G046620 Cucumis sativus L. HOM05D007454 ORTHO05D009382 3.1e-09 65.9 165 32.7
Aa31LG1G8530 Aethionema arabicum HOM05D007454 ORTHO05D009382 1.6e-08 63.5 64 46.9
MELO3C011223.2 Cucumis melo HOM05D007454 ORTHO05D009382 1.6e-08 63.5 115 37.4
MELO3C003676.2 Cucumis melo HOM05D007454 ORTHO05D009382 4.5e-08 62.0 152 32.2
Os05g0575000 Oryza sativa ssp. japonica HOM05D007454 ORTHO05D009382 5.9e-08 61.6 72 40.3
Eucgr.C01807 Eucalyptus grandis HOM05D007454 ORTHO05D009382 7.7e-08 61.2 156 35.3
PSO170G5517 Papaver somniferum HOM05D007454 ORTHO05D009382 4.2e-06 55.5 107 36.4
CDE06G2386 Ceratophyllum demersum HOM05D007454 ORTHO05D009382 5.5e-06 55.1 122 34.4
PSO017G6963 Papaver somniferum HOM05D007454 ORTHO05D009382 9.4e-06 54.3 107 36.4


User provided reference genes

Program Settings