Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.04G049800 Glycine max HOM05D004579 ORTHO05D005376 2.2e-132 475.7 254 100.0
Glyma.06G050800 Glycine max HOM05D004579 ORTHO05D005376 9.9e-125 450.3 254 94.1
Phvul.009G076200 Phaseolus vulgaris HOM05D004579 ORTHO05D005376 1.9e-112 409.5 257 84.8
Ca_15870_v3 Cicer arietinum L. HOM05D004579 ORTHO05D005376 2.1e-98 362.8 256 74.6
VMungo1309G2710 Vigna mungo HOM05D004579 ORTHO05D005376 2.1e-98 362.8 257 77.8
Lj1g0026801 Lotus japonicus HOM05D004579 ORTHO05D005376 3.0e-97 359.0 279 72.4
Psat5g036520 Pisum sativum HOM05D004579 ORTHO05D005376 1.1e-88 330.5 258 72.1
arahy.Tifrunner.gnm1.ann1.C5JVH4 Arachis hypogaea HOM05D004579 ORTHO05D005376 2.8e-87 325.9 257 69.6
arahy.Tifrunner.gnm1.ann1.XC2JTE Arachis hypogaea HOM05D004579 ORTHO05D005376 1.0e-84 317.4 257 69.3
Lalb_Chr22g0355991 Lupinus albus HOM05D004579 ORTHO05D005376 2.0e-77 293.1 259 65.3
Cfa017933 Carpinus fangiana HOM05D004579 ORTHO05D005376 1.7e-76 290.0 256 64.5
Duzib168G1792 Durio zibethinus HOM05D004579 ORTHO05D005376 3.6e-74 282.3 253 63.2
TPR.G13109 Trifolium pratense HOM05D004579 ORTHO05D005376 6.1e-74 281.6 257 65.4
CiPaw.15G041800 Carya illinoinensis HOM05D004579 ORTHO05D005376 2.3e-73 279.6 253 62.5
Glyma.14G092900 Glycine max HOM05D004579 ORTHO05D005376 4.0e-73 278.9 256 64.1
VMungo0647G1140 Vigna mungo HOM05D004579 ORTHO05D005376 3.7e-71 272.3 262 61.8
Lalb_Chr24g0399591 Lupinus albus HOM05D004579 ORTHO05D005376 6.3e-71 271.6 247 64.8
Dinv23423 Davidia involucrata HOM05D004579 ORTHO05D005376 9.1e-70 267.7 255 61.2
QL02p103256 Quercus lobata HOM05D004579 ORTHO05D005376 1.2e-69 267.3 253 62.1
arahy.Tifrunner.gnm1.ann1.Y2NPND Arachis hypogaea HOM05D004579 ORTHO05D005376 1.6e-69 266.9 269 59.9
QL07p000612 Quercus lobata HOM05D004579 ORTHO05D005376 2.0e-69 266.5 255 62.0
Manes.03G046600 Manihot esculenta HOM05D004579 ORTHO05D005376 3.5e-69 265.8 260 56.9
Medtr1g016630 Medicago truncatula HOM05D004579 ORTHO05D005376 1.0e-68 264.2 266 58.3
Psat6g019640 Pisum sativum HOM05D004579 ORTHO05D005376 1.3e-68 263.8 269 56.5
Prupe.1G414900 Prunus persica HOM05D004579 ORTHO05D005376 1.7e-68 263.5 259 58.3
CSS0030937 Camellia sinensis var. sinensis HOM05D004579 ORTHO05D005376 3.8e-68 262.3 254 57.9
Lj5g0003794 Lotus japonicus HOM05D004579 ORTHO05D005376 3.8e-68 262.3 258 60.1
arahy.Tifrunner.gnm1.ann1.A3GFYF Arachis hypogaea HOM05D004579 ORTHO05D005376 8.5e-68 261.2 266 59.8
Atru.chr7.2020 Acer truncatum HOM05D004579 ORTHO05D005376 1.9e-67 260.0 259 58.7
CANSAT25G0619 Cannabis sativa HOM05D004579 ORTHO05D005376 1.9e-67 260.0 259 59.1
MELO3C022510.2 Cucumis melo HOM05D004579 ORTHO05D005376 9.4e-67 257.7 255 58.4
TWI34G1837 Tripterygium wilfordii HOM05D004579 ORTHO05D005376 2.7e-66 256.1 258 58.5
Ca_02416_v3 Cicer arietinum L. HOM05D004579 ORTHO05D005376 8.0e-66 254.6 261 59.0
ClCG06G000280 Citrullus lanatus HOM05D004579 ORTHO05D005376 1.2e-64 250.8 249 57.0
Duzib187G0056 Durio zibethinus HOM05D004579 ORTHO05D005376 2.0e-64 250.0 254 57.9
Haze_18215 Corylus avellana HOM05D004579 ORTHO05D005376 1.3e-63 247.3 318 49.7
Hma1.2p1_1266F.1_g271430 Hydrangea macrophylla HOM05D004579 ORTHO05D005376 2.2e-63 246.5 252 57.5
Thecc.09G051200 Theobroma cacao HOM05D004579 ORTHO05D005376 3.7e-63 245.7 248 59.3
Manes.16G077900 Manihot esculenta HOM05D004579 ORTHO05D005376 6.3e-63 245.0 263 56.7
Gorai.001G023600 Gossypium raimondii HOM05D004579 ORTHO05D005376 2.4e-62 243.0 255 56.1
Gohir.D07G022900 Gossypium hirsutum HOM05D004579 ORTHO05D005376 3.1e-62 242.7 255 56.1
CsaV3_6G006070 Cucumis sativus L. HOM05D004579 ORTHO05D005376 4.1e-62 242.3 254 56.7
FAN15G2153 Fragaria x ananassa HOM05D004579 ORTHO05D005376 2.7e-61 239.6 262 55.0
Cc08_g10350 Coffea canephora HOM05D004579 ORTHO05D005376 1.0e-60 237.7 252 57.5
FAN20G3218 Fragaria x ananassa HOM05D004579 ORTHO05D005376 1.7e-60 236.9 262 54.2
TAR383G0831 Trochodendron aralioides HOM05D004579 ORTHO05D005376 3.8e-60 235.7 257 55.3
Dinv27966 Davidia involucrata HOM05D004579 ORTHO05D005376 5.0e-60 235.3 250 54.8
Rhsim07G0143600 Rhododendron simsii HOM05D004579 ORTHO05D005376 1.9e-59 233.4 264 54.2
Potri.006G232800 Populus trichocarpa HOM05D004579 ORTHO05D005376 3.3e-59 232.6 265 56.2
Gohir.D05G045500 Gossypium hirsutum HOM05D004579 ORTHO05D005376 4.3e-59 232.3 253 57.3
FAN24G0041 Fragaria x ananassa HOM05D004579 ORTHO05D005376 7.3e-59 231.5 263 54.4
Gohir.A05G043900 Gossypium hirsutum HOM05D004579 ORTHO05D005376 7.3e-59 231.5 275 54.2
FAN27G3258 Fragaria x ananassa HOM05D004579 ORTHO05D005376 1.2e-58 230.7 262 53.4
Sabra06G0181300 Salix brachista HOM05D004579 ORTHO05D005376 1.2e-58 230.7 270 54.8
Ciclev10009210m.g Citrus clementina HOM05D004579 ORTHO05D005376 1.6e-58 230.3 265 54.7
TWI63G0708 Tripterygium wilfordii HOM05D004579 ORTHO05D005376 1.6e-58 230.3 264 56.1
HanXRQChr08g0226451 Helianthus annuus HOM05D004579 ORTHO05D005376 2.1e-58 229.9 254 55.5
HanXRQChr08g0226601 Helianthus annuus HOM05D004579 ORTHO05D005376 2.1e-58 229.9 254 55.5
GSVIVG01035344001 Vitis vinifera HOM05D004579 ORTHO05D005376 2.1e-58 229.9 210 61.9
FvH4_2g32180 Fragaria vesca HOM05D004579 ORTHO05D005376 6.1e-58 228.4 263 54.0
Gorai.009G046700 Gossypium raimondii HOM05D004579 ORTHO05D005376 1.4e-57 227.3 249 57.4
DCAR_019057 Daucus carota HOM05D004579 ORTHO05D005376 8.9e-57 224.6 243 53.9
Gohir.A07G022140 Gossypium hirsutum HOM05D004579 ORTHO05D005376 1.2e-56 224.2 220 58.6
PGR031G0410 Punica granatum HOM05D004579 ORTHO05D005376 5.7e-56 221.9 242 55.4
COL.COLO4_21028 Corchorus olitorius HOM05D004579 ORTHO05D005376 7.5e-56 221.5 254 51.6
Lsat_1_v5_gn_6_7421 Lactuca sativa HOM05D004579 ORTHO05D005376 1.4e-54 217.2 264 53.4
Sed0027918 Sechium edule HOM05D004579 ORTHO05D005376 4.1e-54 215.7 253 51.0
MSTRG.11672 Avicennia marina HOM05D004579 ORTHO05D005376 5.4e-54 215.3 254 50.4
Nitab4.5_0000359g0090 Nicotiana tabacum HOM05D004579 ORTHO05D005376 5.4e-54 215.3 242 54.5
Nitab4.5_0008290g0030 Nicotiana tabacum HOM05D004579 ORTHO05D005376 7.0e-54 214.9 242 55.0
Sed0005208 Sechium edule HOM05D004579 ORTHO05D005376 1.2e-53 214.2 255 52.2
Nitab4.5_0006174g0020 Nicotiana tabacum HOM05D004579 ORTHO05D005376 2.7e-53 213.0 242 54.1
TPR.G25353 Trifolium pratense HOM05D004579 ORTHO05D005376 7.8e-53 211.5 135 77.8
Solyc04g080350.4 Solanum lycopersicum HOM05D004579 ORTHO05D005376 5.0e-52 208.8 247 54.3
Peaxi162Scf00436g00719 Petunia axillaris HOM05D004579 ORTHO05D005376 6.6e-52 208.4 246 52.4
HanXRQChr09g0251171 Helianthus annuus HOM05D004579 ORTHO05D005376 1.9e-51 206.8 233 54.9
Sc09g0009680 Simmondsia chinensis HOM05D004579 ORTHO05D005376 2.5e-51 206.5 261 51.3
Actinidia14703 Actinidia chinensis HOM05D004579 ORTHO05D005376 4.3e-51 205.7 196 60.2
MBI01_g16584_MAGBIO Magnolia biondii HOM05D004579 ORTHO05D005376 4.3e-51 205.7 265 46.8
BraA05t21726Z Brassica rapa HOM05D004579 ORTHO05D005376 5.6e-51 205.3 260 51.2
Nn8g38954 Nelumbo nucifera HOM05D004579 ORTHO05D005376 5.6e-51 205.3 256 52.3
Sopen04g033940 Solanum pennellii HOM05D004579 ORTHO05D005376 7.3e-51 204.9 243 53.5
PGSC0003DMG400005151 Solanum tuberosum HOM05D004579 ORTHO05D005376 1.2e-50 204.1 246 53.3
Migut.A00154 Erythranthe guttata HOM05D004579 ORTHO05D005376 1.6e-50 203.8 246 51.6
Eucgr.C00634 Eucalyptus grandis HOM05D004579 ORTHO05D005376 1.6e-50 203.8 253 50.6
CAN.G1226.13 Capsicum annuum HOM05D004579 ORTHO05D005376 2.1e-50 203.4 245 51.4
Thhalv10021403m.g Eutrema salsugineum HOM05D004579 ORTHO05D005376 2.8e-50 203.0 256 49.2
SalBow4G3199 Salvia bowleyana HOM05D004579 ORTHO05D005376 3.6e-50 202.6 253 51.0
TAR626G1184 Trochodendron aralioides HOM05D004579 ORTHO05D005376 3.6e-50 202.6 188 63.8
AT3G20430 Arabidopsis thaliana HOM05D004579 ORTHO05D005376 8.0e-50 201.4 264 50.8
PGR142G1482 Punica granatum HOM05D004579 ORTHO05D005376 1.4e-49 200.7 245 51.0
A05p28470 Brassica napus HOM05D004579 ORTHO05D005376 1.8e-49 200.3 263 49.8
BcaC05g28330 Brassica carinata HOM05D004579 ORTHO05D005376 3.1e-49 199.5 265 47.9
BolC5t33107H Brassica oleracea HOM05D004579 ORTHO05D005376 3.1e-49 199.5 265 47.9
FAN24G1203 Fragaria x ananassa HOM05D004579 ORTHO05D005376 3.1e-49 199.5 263 49.8
C05p43910 Brassica napus HOM05D004579 ORTHO05D005376 8.9e-49 198.0 264 49.2
Hund03357 Selenicereus undatus HOM05D004579 ORTHO05D005376 1.2e-48 197.6 282 47.9
SGA_v2.0_scaffold88G27218 Striga asiatica HOM05D004579 ORTHO05D005376 3.4e-48 196.1 254 47.6
Aqoxy7G00927 Aquilegia oxysepala HOM05D004579 ORTHO05D005376 4.4e-48 195.7 259 48.6
Aa31LG8G7240 Aethionema arabicum HOM05D004579 ORTHO05D005376 9.8e-48 194.5 249 51.4
BcaB06g26108 Brassica carinata HOM05D004579 ORTHO05D005376 3.7e-47 192.6 254 50.4
unitig_736.g22340 Utricularia gibba HOM05D004579 ORTHO05D005376 1.1e-46 191.0 250 43.2
Oeu018654.1 Olea europaea HOM05D004579 ORTHO05D005376 1.9e-46 190.3 171 62.0
Oeu037326.2 Olea europaea HOM05D004579 ORTHO05D005376 1.9e-46 190.3 279 46.6
Sp3g18440 Schrenkiella parvula HOM05D004579 ORTHO05D005376 2.4e-46 189.9 260 50.8
vmacro05280 Vaccinium macrocarpon HOM05D004579 ORTHO05D005376 5.4e-46 188.7 370 39.5
Carub.0003s2037 Capsella rubella HOM05D004579 ORTHO05D005376 3.5e-45 186.0 264 45.8
CARHR096140 Cardamine hirsuta HOM05D004579 ORTHO05D005376 6.0e-45 185.3 253 51.0
THA.LOC104811250 Tarenaya hassleriana HOM05D004579 ORTHO05D005376 7.8e-45 184.9 165 60.0
Ah.11g044630 Amaranthus hybridus HOM05D004579 ORTHO05D005376 5.0e-44 182.2 261 48.7
HPP92_014384 Vanilla planifolia HOM05D004579 ORTHO05D005376 9.5e-43 177.9 250 48.4
AL3G34150 Arabidopsis lyrata HOM05D004579 ORTHO05D005376 3.6e-42 176.0 256 49.2
EL10Ac2g03929 Beta vulgaris HOM05D004579 ORTHO05D005376 6.2e-42 175.3 257 45.1
Nn6g35393 Nelumbo nucifera HOM05D004579 ORTHO05D005376 6.2e-42 175.3 258 48.4
ECA233G0431 Erigeron canadensis HOM05D004579 ORTHO05D005376 8.1e-42 174.9 268 46.3
CDE02G1740 Ceratophyllum demersum HOM05D004579 ORTHO05D005376 2.3e-41 173.3 246 45.1
PSO210G6474 Papaver somniferum HOM05D004579 ORTHO05D005376 2.0e-40 170.2 272 44.1
AUR62022041 Chenopodium quinoa HOM05D004579 ORTHO05D005376 7.5e-40 168.3 175 48.6
CSS0042880 Camellia sinensis var. sinensis HOM05D004579 ORTHO05D005376 4.9e-39 165.6 152 58.6
ATR0789G072 Amborella trichopoda HOM05D004579 ORTHO05D005376 8.3e-39 164.9 253 44.7
Zm00001eb356770 Zea mays HOM05D004579 ORTHO05D005376 1.1e-38 164.5 258 45.3
Hund19474 Selenicereus undatus HOM05D004579 ORTHO05D005376 1.4e-38 164.1 367 37.6
PSO210G6518 Papaver somniferum HOM05D004579 ORTHO05D005376 1.9e-38 163.7 272 43.0
Os01g0559200 Oryza sativa ssp. japonica HOM05D004579 ORTHO05D005376 2.5e-35 153.3 264 43.6
PSO017G1019 Papaver somniferum HOM05D004579 ORTHO05D005376 4.3e-35 152.5 165 50.3
MSTRG.25939 Avicennia marina HOM05D004579 ORTHO05D005376 1.8e-33 147.1 145 53.8
arahy.Tifrunner.gnm1.ann1.E1I8FT Arachis hypogaea HOM05D004579 ORTHO05D005376 3.4e-32 142.9 152 57.2
Cpa.g.sc84.21 Carica papaya HOM05D004579 ORTHO05D005376 2.3e-28 130.2 247 42.9
RcHm_v2.0_Chr6g0310501 Rosa chinensis HOM05D004579 ORTHO05D005376 3.3e-27 126.3 142 50.7
TPR.G25355 Trifolium pratense HOM05D004579 ORTHO05D005376 1.6e-26 124.0 131 61.8
vmacro00165 Vaccinium macrocarpon HOM05D004579 ORTHO05D005376 2.1e-26 123.6 245 38.4
Actinidia18195 Actinidia chinensis HOM05D004579 ORTHO05D005376 1.4e-25 120.9 122 61.5
SEGI_10906 Sequoiadendron giganteum HOM05D004579 ORTHO05D005376 1.4e-25 120.9 242 34.3
AUR62009186 Chenopodium quinoa HOM05D004579 ORTHO05D005376 3.4e-24 116.3 138 44.9
Phvul.001G033700 Phaseolus vulgaris HOM05D004579 ORTHO05D005376 4.2e-22 109.4 154 44.2
PSO063G4337 Papaver somniferum HOM05D004579 ORTHO05D005376 5.4e-22 109.0 243 35.4
PGSC0003DMG400032806 Solanum tuberosum HOM05D004579 ORTHO05D005376 6.6e-20 102.1 70 72.9
Medtr3g104160 Medicago truncatula HOM05D004579 ORTHO05D005376 1.9e-19 100.5 87 66.7
Medtr3g104200 Medicago truncatula HOM05D004579 ORTHO05D005376 7.3e-19 98.6 85 67.1
AagrBONN_evm.TU.Sc2ySwM_117.2939 Anthoceros agrestis HOM05D004579 ORTHO05D005376 6.2e-18 95.5 199 35.7
Hma1.2p1_1944F.1_g308530 Hydrangea macrophylla HOM05D004579 ORTHO05D005376 1.1e-17 94.7 132 43.2
RcHm_v2.0_Chr6g0310491 Rosa chinensis HOM05D004579 ORTHO05D005376 1.1e-17 94.7 125 51.2
Mapoly0091s0021 Marchantia polymorpha HOM05D004579 ORTHO05D005376 9.0e-17 91.7 211 35.1
CBR_g36456 Chara braunii HOM05D004579 ORTHO05D005376 6.4e-15 85.5 160 33.8
Pp3c10_2240 Physcomitrium patens HOM05D004579 ORTHO05D005376 6.4e-15 85.5 104 42.3
arahy.Tifrunner.gnm1.ann1.LJH7P1 Arachis hypogaea HOM05D004579 ORTHO05D005376 9.3e-14 81.6 123 46.3
arahy.Tifrunner.gnm1.ann1.FCA0JR Arachis hypogaea HOM05D004579 ORTHO05D005376 1.2e-13 81.3 89 55.1
QL03p011522 Quercus lobata HOM05D004579 ORTHO05D005376 1.3e-10 71.2 64 56.2
vmacro00163 Vaccinium macrocarpon HOM05D004579 ORTHO05D005376 5.3e-09 65.9 220 32.3
PSO017G0877 Papaver somniferum HOM05D004579 ORTHO05D005376 2.0e-08 63.9 47 61.7
PSO017G5975 Papaver somniferum HOM05D004579 ORTHO05D005376 2.0e-08 63.9 47 61.7
QL03p011519 Quercus lobata HOM05D004579 ORTHO05D005376 5.8e-08 62.4 87 51.7
Rhsim01G0128100 Rhododendron simsii HOM05D033462 ORTHO05D011520 4.2e-06 56.2 130 38.5


User provided reference genes

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