Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.04G047500 Glycine max HOM05D005471 ORTHO05D006170 3.3e-206 721.5 361 100.0
Glyma.06G048400 Glycine max HOM05D005471 ORTHO05D006170 2.1e-184 649.0 401 84.3
Phvul.009G073700 Phaseolus vulgaris HOM05D005471 ORTHO05D006170 1.7e-178 629.4 401 82.3
Medtr3g103350 Medicago truncatula HOM05D005471 ORTHO05D006170 7.4e-166 587.4 395 77.7
TPR.G30210 Trifolium pratense HOM05D005471 ORTHO05D006170 8.2e-165 583.9 397 77.8
Lj1g0028245 Lotus japonicus HOM05D005471 ORTHO05D006170 2.9e-162 575.5 395 76.5
Lalb_Chr11g0063001 Lupinus albus HOM05D005471 ORTHO05D006170 6.5e-162 574.3 401 75.3
Lalb_Chr08g0245201 Lupinus albus HOM05D005471 ORTHO05D006170 3.2e-161 572.0 395 75.9
arahy.Tifrunner.gnm1.ann1.F72CPE Arachis hypogaea HOM05D005471 ORTHO05D006170 6.9e-156 554.3 402 73.9
arahy.Tifrunner.gnm1.ann1.P8GEK4 Arachis hypogaea HOM05D005471 ORTHO05D006170 2.0e-155 552.7 428 69.9
Psat5g045040 Pisum sativum HOM05D005471 ORTHO05D006170 9.4e-153 543.9 395 72.9
VMungo1309G2773 Vigna mungo HOM05D005471 ORTHO05D006170 2.1e-152 542.7 403 73.7
Ca_15890_v3 Cicer arietinum L. HOM05D005471 ORTHO05D006170 4.8e-149 531.6 384 74.5
GSVIVG01009307001 Vitis vinifera HOM05D005471 ORTHO05D006170 5.0e-146 521.5 403 66.7
MD08G1078900 Malus domestica HOM05D005471 ORTHO05D006170 8.5e-146 520.8 403 68.7
Ciclev10001411m.g Citrus clementina HOM05D005471 ORTHO05D006170 1.9e-145 519.6 401 67.6
MD15G1065900 Malus domestica HOM05D005471 ORTHO05D006170 7.2e-145 517.7 403 68.0
Thecc.08G085200 Theobroma cacao HOM05D005471 ORTHO05D006170 7.2e-145 517.7 401 68.6
Cfa013748 Carpinus fangiana HOM05D005471 ORTHO05D006170 1.2e-144 516.9 417 66.9
Gohir.D06G022300 Gossypium hirsutum HOM05D005471 ORTHO05D006170 1.8e-143 513.1 401 68.1
Gorai.010G026900 Gossypium raimondii HOM05D005471 ORTHO05D006170 1.8e-143 513.1 401 68.1
Manes.18G048900 Manihot esculenta HOM05D005471 ORTHO05D006170 2.3e-143 512.7 401 66.6
MELO3C010789.2 Cucumis melo HOM05D005471 ORTHO05D006170 3.0e-143 512.3 395 66.8
Prupe.1G419800 Prunus persica HOM05D005471 ORTHO05D006170 3.0e-143 512.3 393 69.5
Atru.chr13.864 Acer truncatum HOM05D005471 ORTHO05D006170 6.7e-143 511.1 391 67.3
Gohir.A06G025200 Gossypium hirsutum HOM05D005471 ORTHO05D006170 3.3e-142 508.8 401 67.6
FvH4_2g32730 Fragaria vesca HOM05D005471 ORTHO05D006170 4.4e-142 508.4 401 67.6
CiPaw.07G172600 Carya illinoinensis HOM05D005471 ORTHO05D006170 2.2e-141 506.1 418 66.0
Dinv44934 Davidia involucrata HOM05D005471 ORTHO05D006170 2.2e-141 506.1 394 65.7
CsaV3_2G025960 Cucumis sativus L. HOM05D005471 ORTHO05D006170 1.8e-140 503.1 395 65.8
FAN20G2694 Fragaria x ananassa HOM05D005471 ORTHO05D006170 3.1e-140 502.3 404 67.1
Hma1.2p1_1170F.1_g263420 Hydrangea macrophylla HOM05D005471 ORTHO05D006170 3.5e-139 498.8 408 65.7
FAN15G0642 Fragaria x ananassa HOM05D005471 ORTHO05D006170 7.7e-139 497.7 404 66.3
FAN27G0342 Fragaria x ananassa HOM05D005471 ORTHO05D006170 3.8e-138 495.4 418 64.6
COL.COLO4_28470 Corchorus olitorius HOM05D005471 ORTHO05D006170 5.0e-138 495.0 389 68.9
Nn5g30656 Nelumbo nucifera HOM05D005471 ORTHO05D006170 8.5e-138 494.2 396 65.7
RcHm_v2.0_Chr6g0309951 Rosa chinensis HOM05D005471 ORTHO05D006170 1.5e-137 493.4 397 66.5
FAN24G0217 Fragaria x ananassa HOM05D005471 ORTHO05D006170 5.2e-135 485.0 396 66.4
Eucgr.F02230 Eucalyptus grandis HOM05D005471 ORTHO05D006170 1.2e-134 483.8 402 62.7
Gorai.009G221700 Gossypium raimondii HOM05D005471 ORTHO05D006170 1.2e-134 483.8 395 65.3
Manes.05G183100 Manihot esculenta HOM05D005471 ORTHO05D006170 2.0e-134 483.0 395 64.3
Sabra14G0008300 Salix brachista HOM05D005471 ORTHO05D006170 2.0e-134 483.0 422 62.6
Gohir.D05G215000 Gossypium hirsutum HOM05D005471 ORTHO05D006170 5.7e-134 481.5 395 65.1
ClCG08G016670 Citrullus lanatus HOM05D005471 ORTHO05D006170 7.5e-134 481.1 391 64.7
Sed0019663 Sechium edule HOM05D005471 ORTHO05D006170 9.8e-134 480.7 387 64.9
CSS0040686 Camellia sinensis var. sinensis HOM05D005471 ORTHO05D006170 2.2e-133 479.6 401 63.8
Sc02g0008090 Simmondsia chinensis HOM05D005471 ORTHO05D006170 2.4e-132 476.1 403 63.0
TWI12G0997 Tripterygium wilfordii HOM05D005471 ORTHO05D006170 3.1e-132 475.7 398 64.3
Dinv39207 Davidia involucrata HOM05D005471 ORTHO05D006170 5.4e-132 474.9 402 62.2
CiPaw.08G051800 Carya illinoinensis HOM05D005471 ORTHO05D006170 3.5e-131 472.2 417 62.4
Aqoxy6G02473 Aquilegia oxysepala HOM05D005471 ORTHO05D006170 5.0e-130 468.4 399 62.9
Ah.05g166980 Amaranthus hybridus HOM05D005471 ORTHO05D006170 2.5e-129 466.1 402 62.4
Duzib093G1789 Durio zibethinus HOM05D005471 ORTHO05D006170 7.2e-129 464.5 393 63.9
CSS0014765 Camellia sinensis var. sinensis HOM05D005471 ORTHO05D006170 3.0e-127 459.1 403 61.8
MBI16_g27035_MAGBIO Magnolia biondii HOM05D005471 ORTHO05D006170 3.4e-126 455.7 441 57.1
CSS0038926 Camellia sinensis var. sinensis HOM05D005471 ORTHO05D006170 5.7e-126 454.9 430 58.8
ECA232G3342 Erigeron canadensis HOM05D005471 ORTHO05D006170 5.7e-126 454.9 403 61.5
SGA_v2.0_scaffold74G24542 Striga asiatica HOM05D005471 ORTHO05D006170 2.8e-125 452.6 401 61.3
Migut.C00408 Erythranthe guttata HOM05D005471 ORTHO05D006170 3.7e-125 452.2 401 59.4
HanXRQChr09g0254061 Helianthus annuus HOM05D005471 ORTHO05D006170 2.4e-124 449.5 403 60.0
HanXRQChr15g0493081 Helianthus annuus HOM05D005471 ORTHO05D006170 1.2e-123 447.2 399 60.2
THA.LOC104819922 Tarenaya hassleriana HOM05D005471 ORTHO05D006170 3.5e-123 445.7 397 58.9
CARHR283850 Cardamine hirsuta HOM05D005471 ORTHO05D006170 4.5e-123 445.3 394 60.2
Sp2g05030 Schrenkiella parvula HOM05D005471 ORTHO05D006170 2.3e-122 443.0 394 60.4
Sopen04g031200 Solanum pennellii HOM05D005471 ORTHO05D006170 2.3e-122 443.0 396 61.1
PGSC0003DMG400004915 Solanum tuberosum HOM05D005471 ORTHO05D006170 2.3e-122 443.0 396 61.1
Solyc04g077560.3 Solanum lycopersicum HOM05D005471 ORTHO05D006170 3.8e-122 442.2 396 60.9
CDE02G4131 Ceratophyllum demersum HOM05D005471 ORTHO05D006170 6.6e-122 441.4 395 60.8
EL10Ac1g02354 Beta vulgaris HOM05D005471 ORTHO05D006170 8.6e-122 441.0 395 60.3
Gohir.D06G026900 Gossypium hirsutum HOM05D005471 ORTHO05D006170 4.3e-121 438.7 362 66.9
AT1G59520 Arabidopsis thaliana HOM05D005471 ORTHO05D006170 9.5e-121 437.6 394 59.6
BcaC09g49476 Brassica carinata HOM05D005471 ORTHO05D006170 1.6e-120 436.8 394 59.6
Carub.0002s0591 Capsella rubella HOM05D005471 ORTHO05D006170 6.1e-120 434.9 394 59.1
Cc10_g07570 Coffea canephora HOM05D005471 ORTHO05D006170 6.1e-120 434.9 396 57.8
Lj4A753G30 Lonicera japonica HOM05D005471 ORTHO05D006170 5.2e-119 431.8 348 64.7
AUR62035006 Chenopodium quinoa HOM05D005471 ORTHO05D006170 1.2e-118 430.6 365 63.6
PSO017G6379 Papaver somniferum HOM05D005471 ORTHO05D006170 4.4e-118 428.7 395 58.7
Rhsim06G0064300 Rhododendron simsii HOM05D005471 ORTHO05D006170 4.4e-118 428.7 367 63.2
MSTRG.25028 Avicennia marina HOM05D005471 ORTHO05D006170 1.7e-117 426.8 398 58.0
Gohir.A05G211700 Gossypium hirsutum HOM05D005471 ORTHO05D006170 1.7e-117 426.8 395 59.5
A01p28660 Brassica napus HOM05D005471 ORTHO05D006170 1.1e-116 424.1 391 59.1
PSO170G6612 Papaver somniferum HOM05D005471 ORTHO05D006170 1.1e-116 424.1 389 58.6
C01p36310 Brassica napus HOM05D005471 ORTHO05D006170 5.4e-116 421.8 387 59.2
PSO541G0412 Papaver somniferum HOM05D005471 ORTHO05D006170 9.2e-116 421.0 396 59.3
PSO675G5405 Papaver somniferum HOM05D005471 ORTHO05D006170 9.2e-116 421.0 399 58.4
BraA01t03038Z Brassica rapa HOM05D005471 ORTHO05D006170 2.7e-115 419.5 398 58.3
BolC1t03588H Brassica oleracea HOM05D005471 ORTHO05D006170 3.5e-115 419.1 398 58.3
ATR0739G016 Amborella trichopoda HOM05D005471 ORTHO05D006170 1.7e-114 416.8 386 58.0
Aa31LG2G10610 Aethionema arabicum HOM05D005471 ORTHO05D006170 8.0e-112 407.9 383 58.7
Lsat_1_v5_gn_2_90520 Lactuca sativa HOM05D005471 ORTHO05D006170 4.0e-111 405.6 369 62.3
unitig_37.g13113 Utricularia gibba HOM05D005471 ORTHO05D006170 1.2e-110 404.1 405 55.8
BcaC09g49477 Brassica carinata HOM05D005471 ORTHO05D006170 8.3e-109 397.9 387 57.9
Thhalv10023553m.g Eutrema salsugineum HOM05D005471 ORTHO05D006170 9.2e-108 394.4 394 54.6
PGR031G3068 Punica granatum HOM05D005471 ORTHO05D006170 4.6e-107 392.1 402 54.7
HPP92_007709 Vanilla planifolia HOM05D005471 ORTHO05D006170 5.0e-106 388.7 392 55.9
TAR625G0189 Trochodendron aralioides HOM05D005471 ORTHO05D006170 1.7e-101 373.6 243 77.4
Nitab4.5_0001426g0050 Nicotiana tabacum HOM05D005471 ORTHO05D006170 4.9e-101 372.1 432 51.4
Os10g0102900 Oryza sativa ssp. japonica HOM05D005471 ORTHO05D006170 3.2e-100 369.4 388 52.6
Os07g0248800 Oryza sativa ssp. japonica HOM05D005471 ORTHO05D006170 9.2e-100 367.9 388 52.3
Nitab4.5_0006888g0020 Nicotiana tabacum HOM05D005471 ORTHO05D006170 2.1e-99 366.7 392 54.8
DCAR_019346 Daucus carota HOM05D005471 ORTHO05D006170 1.7e-98 363.6 393 51.9
Nitab4.5_0002796g0080 Nicotiana tabacum HOM05D005471 ORTHO05D006170 8.6e-98 361.3 396 53.3
Os04g0183100 Oryza sativa ssp. japonica HOM05D005471 ORTHO05D006170 1.9e-97 360.1 391 51.2
Zm00001eb025640 Zea mays HOM05D005471 ORTHO05D006170 1.1e-95 354.4 392 50.0
BcaB04g20211 Brassica carinata HOM05D005471 ORTHO05D006170 8.4e-93 344.7 366 54.1
Lsat_1_v5_gn_1_56140 Lactuca sativa HOM05D001400 ORTHO05D001795 2.4e-92 343.2 392 51.3
Peaxi162Scf00340g00069 Petunia axillaris HOM05D005471 ORTHO05D006170 1.9e-84 317.0 435 46.2
Potri.014G013500 Populus trichocarpa HOM05D005471 ORTHO05D006170 1.9e-84 317.0 275 61.5
Cpa.g.sc142.57 Carica papaya HOM05D005471 ORTHO05D006170 9.3e-76 288.1 304 52.6
QL12p038448 Quercus lobata HOM05D005471 ORTHO05D006170 8.1e-72 275.0 313 50.5
AagrBONN_evm.TU.Sc2ySwM_368.1412 Anthoceros agrestis HOM05D005471 ORTHO05D006170 3.2e-68 263.1 394 41.4
Mapoly0067s0099 Marchantia polymorpha HOM05D005471 ORTHO05D006170 2.1e-67 260.4 395 43.8
AUR62037460 Chenopodium quinoa HOM05D005471 ORTHO05D006170 2.8e-64 250.0 222 58.6
Pp3c17_20680 Physcomitrium patens HOM05D005471 ORTHO05D006170 1.8e-63 247.3 389 42.2
SMO117G0302 Selaginella moellendorffii HOM05D005471 ORTHO05D006170 6.7e-58 228.8 380 39.5
vmacro21421 Vaccinium macrocarpon HOM05D005471 ORTHO05D006170 6.3e-56 222.2 274 46.7
CBR_g49495 Chara braunii HOM05D005471 ORTHO05D006170 1.8e-55 220.7 425 35.3
vmacro21420 Vaccinium macrocarpon HOM05D005471 ORTHO05D006170 1.3e-50 204.5 144 73.6
DCAR_020058 Daucus carota HOM05D005471 ORTHO05D006170 3.0e-50 203.4 217 50.7
Gohir.D04G027975 Gossypium hirsutum HOM05D005471 ORTHO05D006170 5.9e-38 162.5 109 75.2
Gorai.012G030800 Gossypium raimondii HOM05D005471 ORTHO05D006170 1.7e-37 161.0 109 74.3
Haze_22399 Corylus avellana HOM05D005471 ORTHO05D006170 2.9e-37 160.2 434 32.3
Gohir.D12G192766 Gossypium hirsutum HOM05D005471 ORTHO05D006170 2.9e-37 160.2 109 75.2
Psat5g037200 Pisum sativum HOM05D005471 ORTHO05D006170 2.5e-36 157.1 155 56.1
Haze_22407 Corylus avellana HOM05D005471 ORTHO05D006170 4.2e-36 156.4 281 39.9
Gohir.A12G016250 Gossypium hirsutum HOM05D005471 ORTHO05D006170 2.1e-35 154.1 109 72.5
Phvul.009G072300 Phaseolus vulgaris HOM05D005471 ORTHO05D000997 8.8e-34 148.7 77 93.5
QL12p038454 Quercus lobata HOM05D005471 ORTHO05D006170 2.8e-32 143.7 116 66.4
Cpa.g.sc142.58 Carica papaya HOM05D005471 ORTHO05D006170 7.2e-28 129.0 87 74.7
Peaxi162Scf00448g00027 Petunia axillaris HOM05D005471 ORTHO05D006170 5.2e-26 122.9 124 57.3
Hund05280 Selenicereus undatus HOM05D005471 ORTHO05D006170 5.2e-26 122.9 94 62.8
DCAR_020059 Daucus carota HOM05D005471 ORTHO05D006170 1.8e-23 114.4 96 66.7
Gorai.001G227100 Gossypium raimondii HOM05D005471 ORTHO05D006170 6.8e-18 95.9 67 71.6
Actinidia31832 Actinidia chinensis HOM05D006494 ORTHO05D007787 7.7e-14 82.4 60 63.3
SHI08425 Sapria himalayana HOM05D005471 ORTHO05D006170 1.0e-13 82.0 100 46.0
Phvul.009G072333 Phaseolus vulgaris HOM05D005471 ORTHO05D006170 1.1e-12 78.6 66 62.1
SEGI_08278 Sequoiadendron giganteum HOM05D005471 ORTHO05D006170 9.5e-12 75.5 88 44.3
CAN.G213.23 Capsicum annuum HOM05D005471 ORTHO05D006170 1.2e-11 75.1 67 55.2
SEGI_29276 Sequoiadendron giganteum HOM05D005471 ORTHO05D006170 1.0e-10 72.0 79 51.9
Gohir.D11G128350 Gossypium hirsutum HOM05D005471 ORTHO05D006170 6.8e-10 69.3 50 66.0
Cre07.g320250 Chlamydomonas reinhardtii HOM05D005471 ORTHO05D006170 9.8e-09 65.5 174 29.9


User provided reference genes

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