Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.04G047002 Glycine max HOM05D006117 ORTHO05D007996 3.2e-95 351.7 169 100.0
Glyma.06G047700 Glycine max HOM05D006117 ORTHO05D007996 4.6e-86 321.2 164 93.3
VMungo1309G1718 Vigna mungo HOM05D006117 ORTHO05D007996 2.8e-83 312.0 164 90.2
Phvul.009G073200 Phaseolus vulgaris HOM05D006117 ORTHO05D007996 1.5e-81 306.2 164 89.0
Lj1g0000026 Lotus japonicus HOM05D006117 ORTHO05D007996 5.5e-71 271.2 164 76.2
Psat5g038440 Pisum sativum HOM05D006117 ORTHO05D007996 2.0e-68 262.7 164 73.8
Medtr3g103300 Medicago truncatula HOM05D006117 ORTHO05D007996 4.8e-67 258.1 164 73.2
Lalb_Chr08g0245231 Lupinus albus HOM05D006117 ORTHO05D007996 6.3e-67 257.7 164 73.2
Ca_15895_v3 Cicer arietinum L. HOM05D006117 ORTHO05D007996 1.1e-66 256.9 164 73.8
Lalb_Chr08g0245251 Lupinus albus HOM05D006117 ORTHO05D007996 1.4e-66 256.5 164 71.3
CiPaw.08G051200 Carya illinoinensis HOM05D006117 ORTHO05D007996 1.2e-65 253.4 164 71.3
Cfa013754 Carpinus fangiana HOM05D006117 ORTHO05D007996 4.2e-63 245.0 157 71.3
QL12p038374 Quercus lobata HOM05D006117 ORTHO05D007996 9.4e-63 243.8 164 68.9
arahy.Tifrunner.gnm1.ann1.NM5DTL Arachis hypogaea HOM05D006117 ORTHO05D007996 2.7e-62 242.3 166 71.7
arahy.Tifrunner.gnm1.ann1.6JMM3R Arachis hypogaea HOM05D006117 ORTHO05D007996 4.7e-62 241.5 166 71.7
FvH4_2g32820 Fragaria vesca HOM05D006117 ORTHO05D007996 1.0e-61 240.4 164 67.1
FAN20G1172 Fragaria x ananassa HOM05D006117 ORTHO05D007996 1.8e-61 239.6 164 66.5
FAN27G0951 Fragaria x ananassa HOM05D006117 ORTHO05D007996 1.8e-61 239.6 164 66.5
FAN24G1443 Fragaria x ananassa HOM05D006117 ORTHO05D007996 2.3e-61 239.2 164 66.5
Nitab4.5_0005915g0010 Nicotiana tabacum HOM05D006117 ORTHO05D007996 5.2e-61 238.0 164 67.1
FAN15G1845 Fragaria x ananassa HOM05D006117 ORTHO05D007996 1.1e-60 236.9 164 65.9
Ciclev10001149m.g Citrus clementina HOM05D006117 ORTHO05D007996 1.5e-60 236.5 164 65.9
RcHm_v2.0_Chr6g0309881 Rosa chinensis HOM05D006117 ORTHO05D007996 2.0e-60 236.1 164 65.2
TWI12G0297 Tripterygium wilfordii HOM05D006117 ORTHO05D007996 4.4e-60 235.0 157 70.7
CSS0008179 Camellia sinensis var. sinensis HOM05D006117 ORTHO05D007996 9.7e-60 233.8 157 65.6
CSS0023541 Camellia sinensis var. sinensis HOM05D006117 ORTHO05D007996 9.7e-60 233.8 157 65.6
Prupe.1G420700 Prunus persica HOM05D006117 ORTHO05D007996 9.7e-60 233.8 164 65.2
CSS0025391 Camellia sinensis var. sinensis HOM05D006117 ORTHO05D007996 1.3e-59 233.4 157 65.6
Rhsim06G0063800 Rhododendron simsii HOM05D006117 ORTHO05D007996 1.3e-59 233.4 164 65.2
Thecc.08G085800 Theobroma cacao HOM05D006117 ORTHO05D007996 1.3e-59 233.4 157 66.9
MSTRG.1022 Avicennia marina HOM05D006117 ORTHO05D007996 2.8e-59 232.3 164 64.6
CSS0015427 Camellia sinensis var. sinensis HOM05D006117 ORTHO05D007996 6.3e-59 231.1 157 65.0
CANSAT25G2369 Cannabis sativa HOM05D006117 ORTHO05D007996 6.3e-59 231.1 166 64.5
Manes.05G182800 Manihot esculenta HOM05D006117 ORTHO05D007996 1.4e-58 229.9 164 65.2
Atru.chr13.856 Acer truncatum HOM05D006117 ORTHO05D007996 1.8e-58 229.6 158 67.7
COL.COLO4_28476 Corchorus olitorius HOM05D006117 ORTHO05D007996 1.8e-58 229.6 157 65.6
Peaxi162Scf00028g00273 Petunia axillaris HOM05D006117 ORTHO05D007996 2.4e-58 229.2 164 65.9
TAR628G0216 Trochodendron aralioides HOM05D006117 ORTHO05D007996 7.0e-58 227.6 154 68.2
Solyc05g050710.3 Solanum lycopersicum HOM05D006117 ORTHO05D007996 9.1e-58 227.3 166 65.1
Sopen05g029120 Solanum pennellii HOM05D006117 ORTHO05D007996 9.1e-58 227.3 166 65.1
Lj4C73T15 Lonicera japonica HOM05D006117 ORTHO05D007996 1.2e-57 226.9 164 64.0
Gohir.A05G211300 Gossypium hirsutum HOM05D006117 ORTHO05D007996 1.6e-57 226.5 166 63.3
Potri.014G014400 Populus trichocarpa HOM05D006117 ORTHO05D007996 1.6e-57 226.5 157 66.9
vmacro21425 Vaccinium macrocarpon HOM05D006117 ORTHO05D007996 2.0e-57 226.1 164 62.2
Gohir.D05G214600 Gossypium hirsutum HOM05D006117 ORTHO05D007996 3.5e-57 225.3 157 65.6
Sabra14G0008600 Salix brachista HOM05D006117 ORTHO05D007996 7.7e-57 224.2 157 65.6
SalBow7G4164 Salvia bowleyana HOM05D006117 ORTHO05D007996 7.7e-57 224.2 165 63.6
ECA232G2767 Erigeron canadensis HOM05D006117 ORTHO05D007996 1.0e-56 223.8 164 62.8
Hund05287 Selenicereus undatus HOM05D006117 ORTHO05D007996 1.0e-56 223.8 157 65.6
DCAR_009868 Daucus carota HOM05D006117 ORTHO05D007996 1.7e-56 223.0 154 64.9
Duzib093G0384 Durio zibethinus HOM05D006117 ORTHO05D007996 1.7e-56 223.0 158 65.8
HanXRQChr10g0279141 Helianthus annuus HOM05D006117 ORTHO05D007996 1.7e-56 223.0 164 62.8
PGSC0003DMG400007000 Solanum tuberosum HOM05D006117 ORTHO05D007996 1.7e-56 223.0 164 65.2
MBI16_g39105_MAGBIO Magnolia biondii HOM05D006117 ORTHO05D007996 2.2e-56 222.6 157 67.5
Ah.05g167020 Amaranthus hybridus HOM05D006117 ORTHO05D007996 2.9e-56 222.2 157 63.7
Cc10_g05140 Coffea canephora HOM05D006117 ORTHO05D007996 2.9e-56 222.2 157 64.3
Gorai.009G221300 Gossypium raimondii HOM05D006117 ORTHO05D007996 2.9e-56 222.2 157 64.3
Aqoxy6G02537 Aquilegia oxysepala HOM05D006117 ORTHO05D007996 3.8e-56 221.9 164 64.6
Actinidia10214 Actinidia chinensis HOM05D006117 ORTHO05D007996 6.5e-56 221.1 164 61.6
Lsat_1_v5_gn_9_81040 Lactuca sativa HOM05D006117 ORTHO05D007996 6.5e-56 221.1 164 60.4
CDE07G1235 Ceratophyllum demersum HOM05D006117 ORTHO05D007996 1.1e-55 220.3 164 63.4
AUR62034997 Chenopodium quinoa HOM05D006117 ORTHO05D007996 1.9e-55 219.5 157 64.3
Oeu047247.2 Olea europaea HOM05D006117 ORTHO05D007996 1.9e-55 219.5 167 61.1
CsaV3_6G002500 Cucumis sativus L. HOM05D006117 ORTHO05D007996 9.4e-55 217.2 157 63.7
MELO3C025035.2 Cucumis melo HOM05D006117 ORTHO05D007996 2.7e-54 215.7 157 63.1
CAN.G112.13 Capsicum annuum HOM05D006117 ORTHO05D007996 4.7e-54 214.9 167 63.5
ClCG08G002010 Citrullus lanatus HOM05D006117 ORTHO05D007996 4.7e-54 214.9 157 63.7
Eucgr.F02231 Eucalyptus grandis HOM05D006117 ORTHO05D007996 4.7e-54 214.9 165 61.8
Sed0008074 Sechium edule HOM05D006117 ORTHO05D007996 4.7e-54 214.9 157 63.7
PSO675G0076 Papaver somniferum HOM05D006117 ORTHO05D007996 8.0e-54 214.2 166 62.7
EL10Ac1g02358 Beta vulgaris HOM05D006117 ORTHO05D007996 2.3e-53 212.6 158 61.4
AUR62037469 Chenopodium quinoa HOM05D006117 ORTHO05D007996 8.8e-53 210.7 157 60.5
Nn5g30637 Nelumbo nucifera HOM05D006117 ORTHO05D007996 2.0e-52 209.5 157 63.1
Migut.C00400 Erythranthe guttata HOM05D006117 ORTHO05D007996 1.7e-51 206.5 166 60.8
Sc15g0005470 Simmondsia chinensis HOM05D006117 ORTHO05D007996 2.2e-51 206.1 157 58.0
PGR031G1695 Punica granatum HOM05D006117 ORTHO05D007996 3.7e-51 205.3 170 62.4
ATR0739G041 Amborella trichopoda HOM05D006117 ORTHO05D007996 4.8e-51 204.9 165 58.2
unitig_26.g9869 Utricularia gibba HOM05D006117 ORTHO05D007996 6.3e-51 204.5 165 56.4
Sc15g0005440 Simmondsia chinensis HOM05D006117 ORTHO05D007996 1.4e-50 203.4 157 57.3
THA.LOC104807059 Tarenaya hassleriana HOM05D006117 ORTHO05D007996 7.7e-49 197.6 165 57.6
Thhalv10007681m.g Eutrema salsugineum HOM05D006117 ORTHO05D007996 6.5e-48 194.5 165 58.8
CARHR027100 Cardamine hirsuta HOM05D006117 ORTHO05D007996 1.9e-47 193.0 165 58.2
BcaC06g35298 Brassica carinata HOM05D006117 ORTHO05D007996 1.2e-46 190.3 165 58.2
AL1G40910 Arabidopsis lyrata HOM05D006117 ORTHO05D007996 1.6e-46 189.9 158 61.4
SGA_v2.0_scaffold238G43920 Striga asiatica HOM05D006117 ORTHO05D007996 1.6e-46 189.9 158 57.0
SEGI_31593 Sequoiadendron giganteum HOM05D006117 ORTHO05D007996 2.1e-46 189.5 154 61.0
A07p11730 Brassica napus HOM05D006117 ORTHO05D007996 6.1e-46 188.0 165 57.6
C07p17700 Brassica napus HOM05D006117 ORTHO05D007996 6.1e-46 188.0 165 57.6
BraA07t28958Z Brassica rapa HOM05D006117 ORTHO05D007996 6.1e-46 188.0 165 57.6
Sp1g23730 Schrenkiella parvula HOM05D006117 ORTHO05D007996 6.1e-46 188.0 165 57.0
AT1G27480 Arabidopsis thaliana HOM05D006117 ORTHO05D007996 1.0e-45 187.2 165 57.6
Aa31LG7G10150 Aethionema arabicum HOM05D006117 ORTHO05D007996 2.3e-45 186.0 165 57.0
BcaB03g13981 Brassica carinata HOM05D006117 ORTHO05D007996 2.3e-45 186.0 165 57.0
Carub.0001s2604 Capsella rubella HOM05D006117 ORTHO05D007996 4.0e-45 185.3 140 62.9
Mapoly0123s0013 Marchantia polymorpha HOM05D006117 ORTHO05D007996 6.3e-43 177.9 155 56.1
Os03g0730000 Oryza sativa ssp. japonica HOM05D006117 ORTHO05D007996 6.3e-43 177.9 159 55.3
GSVIVG01009315001 Vitis vinifera HOM05D006117 ORTHO05D007996 4.1e-42 175.3 156 53.2
Pp3c2_14510 Physcomitrium patens HOM05D006117 ORTHO05D007996 1.3e-40 170.2 163 54.0
AagrBONN_evm.TU.Sc2ySwM_344.1796 Anthoceros agrestis HOM05D006117 ORTHO05D007996 1.9e-39 166.4 154 52.6
SMO347G0464 Selaginella moellendorffii HOM05D006117 ORTHO05D007996 5.5e-39 164.9 156 50.6
Zm00001eb025570 Zea mays HOM05D006117 ORTHO05D007996 5.7e-36 154.8 142 47.9
Haze_22413 Corylus avellana HOM05D006117 ORTHO05D007996 1.4e-34 150.2 157 49.7
Os03g0232800 Oryza sativa ssp. japonica HOM05D006117 ORTHO05D007996 2.4e-34 149.4 153 47.7
Zm00001eb124520 Zea mays HOM05D006117 ORTHO05D007996 1.5e-28 130.2 161 42.9
Zm00001eb399490 Zea mays HOM05D006117 ORTHO05D007996 2.9e-27 125.9 157 40.8
Os10g0163370 Oryza sativa ssp. japonica HOM05D006117 ORTHO05D007996 1.9e-26 123.2 136 48.5
Zm00001eb096490 Zea mays HOM05D006117 ORTHO05D007996 6.0e-25 118.2 161 45.3
Os02g0589000 Oryza sativa ssp. japonica HOM05D006117 ORTHO05D007996 5.0e-24 115.2 131 42.7
Zm00001eb096390 Zea mays HOM05D006117 ORTHO05D007996 1.6e-22 110.2 160 42.5
Zm00001eb096400 Zea mays HOM05D006117 ORTHO05D007996 6.2e-22 108.2 160 42.5
Os02g0590400 Oryza sativa ssp. japonica HOM05D006117 ORTHO05D007996 3.4e-20 102.4 137 42.3
Os01g0946300 Oryza sativa ssp. japonica HOM05D006117 ORTHO05D007996 1.1e-18 97.4 132 40.9
Dinv39211 Davidia involucrata HOM05D006117 ORTHO05D007996 1.4e-13 80.5 44 81.8
HPP92_023765 Vanilla planifolia HOM05D006117 ORTHO05D007996 3.0e-08 62.8 35 77.1
Os02g0589700 Oryza sativa ssp. japonica HOM05D006117 ORTHO05D007996 5.6e-07 58.5 68 42.6
PRCOL_00003976 Prasinoderma coloniale HOM05D006117 ORTHO05D007996 9.5e-07 57.8 195 26.7


User provided reference genes

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