Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.04G037500 Glycine max HOM05D006157 ORTHO05D007826 1.5e-107 392.9 207 100.0
Glyma.06G038400 Glycine max HOM05D006157 ORTHO05D007826 1.8e-87 326.2 210 88.1
Phvul.009G063700 Phaseolus vulgaris HOM05D006157 ORTHO05D007826 1.7e-85 319.7 207 82.6
VMungo1309G0335 Vigna mungo HOM05D006157 ORTHO05D007826 2.9e-82 308.9 210 78.6
Ca_13302_v3 Cicer arietinum L. HOM05D006157 ORTHO05D007826 3.3e-70 268.9 205 65.9
Lj5g0002869 Lotus japonicus HOM05D006157 ORTHO05D007826 3.8e-66 255.4 214 61.2
TPR.G13684 Trifolium pratense HOM05D006157 ORTHO05D007826 8.5e-66 254.2 207 63.3
Medtr1g019800 Medicago truncatula HOM05D006157 ORTHO05D007826 4.2e-65 251.9 207 61.8
Glyma.17G243500 Glycine max HOM05D006157 ORTHO05D007826 2.7e-64 249.2 209 67.9
Glyma.14G081800 Glycine max HOM05D006157 ORTHO05D007826 3.6e-64 248.8 208 67.3
Psat6g012720 Pisum sativum HOM05D006157 ORTHO05D007826 8.0e-64 247.7 208 61.5
Phvul.001G020800 Phaseolus vulgaris HOM05D006157 ORTHO05D007826 4.0e-63 245.4 204 66.7
VMungo0647G0691 Vigna mungo HOM05D006157 ORTHO05D007826 4.4e-62 241.9 205 65.4
Lalb_Chr14g0368791 Lupinus albus HOM05D006157 ORTHO05D007826 1.4e-60 236.9 206 58.3
Cfa018525 Carpinus fangiana HOM05D006157 ORTHO05D007826 5.7e-54 214.9 202 55.9
QL02p005407 Quercus lobata HOM05D006157 ORTHO05D007826 7.5e-54 214.5 207 54.1
Haze_17545 Corylus avellana HOM05D006157 ORTHO05D007826 1.8e-52 209.9 202 54.5
Haze_17554 Corylus avellana HOM05D006157 ORTHO05D007826 1.8e-52 209.9 202 54.5
Potri.002G127800 Populus trichocarpa HOM05D006157 ORTHO05D007826 5.9e-51 204.9 206 51.0
Sabra14G0022700 Salix brachista HOM05D006157 ORTHO05D007826 1.5e-49 200.3 207 50.2
CiPaw.15G061800 Carya illinoinensis HOM05D006157 ORTHO05D007826 3.3e-49 199.1 216 50.0
Potri.014G032300 Populus trichocarpa HOM05D006157 ORTHO05D007826 7.2e-49 198.0 207 48.8
TWI56G1258 Tripterygium wilfordii HOM05D006157 ORTHO05D007826 6.1e-48 194.9 210 49.5
Cpa.g.c24415.4 Carica papaya HOM05D006157 ORTHO05D007826 8.9e-47 191.0 205 52.7
Duzib116G0710 Durio zibethinus HOM05D006157 ORTHO05D007826 2.6e-46 189.5 214 48.6
Ciclev10002442m.g Citrus clementina HOM05D006157 ORTHO05D007826 1.7e-45 186.8 202 49.0
CANSAT54G0006 Cannabis sativa HOM05D006157 ORTHO05D007826 2.8e-45 186.0 197 56.9
Manes.18G032700 Manihot esculenta HOM05D006157 ORTHO05D007826 3.7e-45 185.7 205 56.1
Eucgr.F00242 Eucalyptus grandis HOM05D006157 ORTHO05D007826 8.3e-45 184.5 209 54.5
Prupe.1G438800 Prunus persica HOM05D006157 ORTHO05D007826 5.4e-44 181.8 208 50.0
CSS0004131 Camellia sinensis var. sinensis HOM05D006157 ORTHO05D007826 7.0e-44 181.4 226 50.0
Gorai.005G103500 Gossypium raimondii HOM05D006157 ORTHO05D007826 9.2e-44 181.0 209 45.0
Gohir.D02G092100 Gossypium hirsutum HOM05D006157 ORTHO05D007826 2.0e-43 179.9 209 45.0
Gorai.010G017900 Gossypium raimondii HOM05D006157 ORTHO05D007826 2.7e-43 179.5 215 44.7
Gohir.A06G017000 Gossypium hirsutum HOM05D006157 ORTHO05D007826 3.5e-43 179.1 215 44.7
MSTRG.25101 Avicennia marina HOM05D006157 ORTHO05D007826 4.5e-43 178.7 205 52.7
Manes.05G171900 Manihot esculenta HOM05D006157 ORTHO05D007826 4.5e-43 178.7 205 48.8
Manes.05G171901 Manihot esculenta HOM05D006157 ORTHO05D007826 4.5e-43 178.7 205 48.8
Gohir.D06G015100 Gossypium hirsutum HOM05D006157 ORTHO05D007826 5.9e-43 178.3 215 44.7
Gohir.A03G079324 Gossypium hirsutum HOM05D006157 ORTHO05D007826 1.0e-42 177.6 209 44.5
Hma1.2p1_0718F.1_g208450 Hydrangea macrophylla HOM05D006157 ORTHO05D007826 1.7e-42 176.8 199 46.2
MD15G1085000 Malus domestica HOM05D006157 ORTHO05D007826 1.7e-42 176.8 207 46.4
PGR083G2028 Punica granatum HOM05D006157 ORTHO05D007826 2.3e-42 176.4 207 53.6
RcHm_v2.0_Chr6g0307431 Rosa chinensis HOM05D006157 ORTHO05D007826 2.5e-41 172.9 209 51.2
CsaV3_2G028070 Cucumis sativus L. HOM05D006157 ORTHO05D007826 4.3e-41 172.2 206 45.6
Atru.chr13.647 Acer truncatum HOM05D006157 ORTHO05D007826 1.2e-40 170.6 217 46.1
MELO3C010885.2 Cucumis melo HOM05D006157 ORTHO05D007826 1.2e-40 170.6 206 45.6
Sed0006561 Sechium edule HOM05D006157 ORTHO05D007826 1.2e-40 170.6 200 46.5
Dinv35975 Davidia involucrata HOM05D006157 ORTHO05D007826 1.6e-40 170.2 213 50.7
Sed0015883 Sechium edule HOM05D006157 ORTHO05D007826 2.1e-40 169.9 196 46.9
ClCG08G015710 Citrullus lanatus HOM05D006157 ORTHO05D007826 6.1e-40 168.3 195 46.7
FAN15G3536 Fragaria x ananassa HOM05D006157 ORTHO05D007826 1.8e-39 166.8 216 48.1
Actinidia23263 Actinidia chinensis HOM05D006157 ORTHO05D007826 5.2e-39 165.2 215 42.3
FAN20G0621 Fragaria x ananassa HOM05D006157 ORTHO05D007826 4.4e-38 162.2 216 48.6
Nitab4.5_0000686g0050 Nicotiana tabacum HOM05D006157 ORTHO05D007826 7.5e-38 161.4 200 42.0
Nn5g30225 Nelumbo nucifera HOM05D006157 ORTHO05D007826 9.8e-38 161.0 199 50.3
Nitab4.5_0004184g0060 Nicotiana tabacum HOM05D006157 ORTHO05D007890 9.8e-38 161.0 203 41.9
MD08G1103700 Malus domestica HOM05D006157 ORTHO05D007826 2.2e-37 159.8 225 40.9
Nitab4.5_0001101g0070 Nicotiana tabacum HOM05D006157 ORTHO05D007826 1.1e-36 157.5 200 41.5
Peaxi162Scf00064g00125 Petunia axillaris HOM05D006157 ORTHO05D007826 1.1e-36 157.5 204 43.1
FvH4_2g34660 Fragaria vesca HOM05D006157 ORTHO05D007826 2.4e-36 156.4 216 45.4
GSVIVG01009525001 Vitis vinifera HOM05D006157 ORTHO05D007826 1.2e-35 154.1 208 48.6
FAN27G0611 Fragaria x ananassa HOM05D006157 ORTHO05D007826 1.6e-35 153.7 216 47.2
Nitab4.5_0000453g0220 Nicotiana tabacum HOM05D006157 ORTHO05D007890 7.8e-35 151.4 199 41.2
Cc10_g04340 Coffea canephora HOM05D006157 ORTHO05D007826 1.3e-34 150.6 235 40.0
Lj4C53T12 Lonicera japonica HOM05D006157 ORTHO05D007826 3.0e-34 149.4 202 50.5
TAR628G1181 Trochodendron aralioides HOM05D006157 ORTHO05D007826 8.6e-34 147.9 209 46.9
PGSC0003DMG400036180 Solanum tuberosum HOM05D006157 ORTHO05D007826 2.5e-33 146.4 194 39.7
arahy.Tifrunner.gnm1.ann1.HUL940 Arachis hypogaea HOM05D006157 ORTHO05D007826 7.3e-33 144.8 215 45.6
arahy.Tifrunner.gnm1.ann1.R9H0NA Arachis hypogaea HOM05D006157 ORTHO05D007826 7.3e-33 144.8 215 45.6
Lsat_1_v5_gn_4_124041 Lactuca sativa HOM05D006157 ORTHO05D007826 2.1e-32 143.3 216 38.9
Thecc.08G011200 Theobroma cacao HOM05D006157 ORTHO05D007826 2.1e-32 143.3 159 48.4
vmacro21540 Vaccinium macrocarpon HOM05D006157 ORTHO05D007826 3.6e-32 142.5 209 40.7
Peaxi162Scf00528g00414 Petunia axillaris HOM05D006157 ORTHO05D007826 4.7e-32 142.1 198 37.9
THA.LOC104806945 Tarenaya hassleriana HOM05D006157 ORTHO05D007826 6.2e-32 141.7 207 40.1
ECA232G2668 Erigeron canadensis HOM05D006157 ORTHO05D007826 4.0e-31 139.0 216 41.7
Sopen04g032780 Solanum pennellii HOM05D006157 ORTHO05D007826 5.2e-31 138.7 196 40.3
SGA_v2.0_scaffold14G07032 Striga asiatica HOM05D006157 ORTHO05D007826 6.8e-31 138.3 203 43.3
Nn1g05836 Nelumbo nucifera HOM05D006157 ORTHO05D007826 3.4e-30 136.0 210 42.9
Rhsim06G0048100 Rhododendron simsii HOM05D006157 ORTHO05D007826 5.8e-30 135.2 215 44.7
HanXRQChr09g0267931 Helianthus annuus HOM05D006157 ORTHO05D007826 8.3e-29 131.3 220 37.7
MBI02_g17343_MAGBIO Magnolia biondii HOM05D006157 ORTHO05D007826 8.3e-29 131.3 191 40.8
EL10Ac1g01781 Beta vulgaris HOM05D006157 ORTHO05D007826 2.4e-28 129.8 231 36.8
Solyc04g079170.4 Solanum lycopersicum HOM05D006157 ORTHO05D007826 4.1e-28 129.0 190 39.5
Aqoxy6G01361 Aquilegia oxysepala HOM05D006157 ORTHO05D007826 5.4e-28 128.6 208 44.7
Sopen12g030790 Solanum pennellii HOM05D006157 ORTHO05D007826 1.6e-27 127.1 223 35.9
AUR62022432 Chenopodium quinoa HOM05D006157 ORTHO05D007826 3.0e-26 122.9 227 36.1
AUR62039307 Chenopodium quinoa HOM05D006157 ORTHO05D007826 8.6e-26 121.3 218 35.3
DCAR_011305 Daucus carota HOM05D005231 ORTHO05D006387 5.6e-25 118.6 151 45.7
SalBow8G3379 Salvia bowleyana HOM05D006157 ORTHO05D007826 8.1e-24 114.8 208 38.5
Migut.C00597 Erythranthe guttata HOM05D006157 ORTHO05D007826 7.5e-22 108.2 206 35.0
Solyc12g088890.3 Solanum lycopersicum HOM05D006157 ORTHO05D007890 1.3e-21 107.5 168 39.3
Aa31sc924G20 Aethionema arabicum HOM05D006157 ORTHO05D007826 2.9e-21 106.3 208 34.6
A10p06400 Brassica napus HOM05D006157 ORTHO05D007826 1.1e-20 104.4 193 37.8
COL.COLO4_26474 Corchorus olitorius HOM05D006157 ORTHO05D007826 1.1e-20 104.4 206 34.5
Migut.N02699 Erythranthe guttata HOM05D006157 ORTHO05D007826 2.4e-20 103.2 206 31.6
CARHR037020 Cardamine hirsuta HOM05D006157 ORTHO05D007826 4.1e-20 102.4 189 37.0
BcaB07g33839 Brassica carinata HOM05D006157 ORTHO05D007826 1.2e-19 100.9 197 36.5
AL1G53700 Arabidopsis lyrata HOM05D006157 ORTHO05D007826 2.1e-19 100.1 194 38.1
PSO541G3363 Papaver somniferum HOM05D006157 ORTHO05D007826 4.6e-19 99.0 222 38.7
PGSC0003DMG400015419 Solanum tuberosum HOM05D006157 ORTHO05D007826 6.0e-19 98.6 136 38.2
Ah.05g168840 Amaranthus hybridus HOM05D006157 ORTHO05D007826 7.8e-19 98.2 188 36.7
Duzib093G2157 Durio zibethinus HOM05D006157 ORTHO05D007826 1.3e-18 97.4 118 44.9
Thhalv10011797m.g Eutrema salsugineum HOM05D006157 ORTHO05D007826 5.1e-18 95.5 191 36.6
Sp1g34500 Schrenkiella parvula HOM05D006157 ORTHO05D007826 1.5e-17 94.0 180 35.0
SpUn0102_0020 Schrenkiella parvula HOM05D006157 ORTHO05D007826 1.5e-17 94.0 180 35.0
BolSC99t61279H Brassica oleracea HOM05D006157 ORTHO05D007826 3.3e-17 92.8 197 35.5
Actinidia22616 Actinidia chinensis HOM05D006157 ORTHO05D007826 5.6e-17 92.0 169 34.9
C06p01910 Brassica napus HOM05D006157 ORTHO05D007826 7.3e-17 91.7 197 35.5
AT1G47410 Arabidopsis thaliana HOM05D006157 ORTHO05D007826 1.6e-16 90.5 181 35.9
Carub.0001s3622 Capsella rubella HOM05D006157 ORTHO05D007826 4.7e-16 89.0 198 34.8
AUR62019555 Chenopodium quinoa HOM05D006157 ORTHO05D007826 4.7e-16 89.0 161 37.9
Sc02g0007020 Simmondsia chinensis HOM05D006157 ORTHO05D007826 2.0e-14 83.6 216 30.1
BcaC08g42947 Brassica carinata HOM05D006157 ORTHO05D007826 1.7e-13 80.5 99 47.5
CSS0005922 Camellia sinensis var. sinensis HOM05D006157 ORTHO05D007826 8.4e-13 78.2 134 36.6
PSO675G5393 Papaver somniferum HOM05D006157 ORTHO05D007826 4.2e-12 75.9 109 42.2
Zm00001eb315050 Zea mays HOM05D006157 ORTHO05D007826 4.6e-11 72.4 235 27.7
ATR0100G006 Amborella trichopoda HOM05D006157 ORTHO05D007826 2.5e-09 66.6 159 31.4
ATR0100G061 Amborella trichopoda HOM05D006157 ORTHO05D007826 2.1e-08 63.5 159 31.4
unitig_22.g6773 Utricularia gibba HOM05D006157 ORTHO05D007826 3.6e-08 62.8 169 30.2
FvH4_2g34701 Fragaria vesca HOM05D006157 ORTHO05D007826 4.0e-07 59.3 130 36.2
HPP92_027520 Vanilla planifolia HOM05D006157 ORTHO05D007826 4.4e-06 55.8 94 50.0


User provided reference genes

Program Settings