Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.04G035900 Glycine max HOM05D004388 ORTHO05D005106 6.1e-59 230.7 125 100.0
Glyma.06G035900 Glycine max HOM05D004388 ORTHO05D005106 2.2e-53 212.2 126 94.4
Phvul.009G061900 Phaseolus vulgaris HOM05D004388 ORTHO05D005106 6.1e-51 204.1 130 87.7
VMungo1309G1869 Vigna mungo HOM05D004388 ORTHO05D005106 3.7e-48 194.9 128 85.9
Lalb_Chr11g0062471 Lupinus albus HOM05D004388 ORTHO05D005106 1.0e-45 186.8 126 78.6
Lalb_Chr08g0245721 Lupinus albus HOM05D004388 ORTHO05D005106 1.3e-40 169.9 127 71.7
arahy.Tifrunner.gnm1.ann1.2I4SWN Arachis hypogaea HOM05D004388 ORTHO05D005106 2.8e-40 168.7 133 75.2
Lj1g0026402 Lotus japonicus HOM05D004388 ORTHO05D005106 2.7e-38 162.2 128 71.1
GSVIVG01009587001 Vitis vinifera HOM05D004388 ORTHO05D005106 1.2e-33 146.7 125 65.6
Manes.05G168800 Manihot esculenta HOM05D004388 ORTHO05D005106 1.3e-32 143.3 126 64.3
Potri.014G037000 Populus trichocarpa HOM05D004388 ORTHO05D005106 3.7e-32 141.7 125 64.8
Glyma.07G163600 Glycine max HOM05D004388 ORTHO05D005106 8.3e-32 140.6 125 66.4
Cfa018482 Carpinus fangiana HOM05D004388 ORTHO05D005106 3.1e-31 138.7 125 62.4
Sabra09G0082900 Salix brachista HOM05D004388 ORTHO05D005106 3.1e-31 138.7 123 65.0
COL.COLO4_26416 Corchorus olitorius HOM05D004388 ORTHO05D005106 2.0e-30 136.0 132 62.9
TWI56G1138 Tripterygium wilfordii HOM05D004388 ORTHO05D005106 1.3e-29 133.3 127 61.4
Dinv36015 Davidia involucrata HOM05D004388 ORTHO05D005106 2.3e-29 132.5 126 61.9
Manes.15G145400 Manihot esculenta HOM05D004388 ORTHO05D005106 3.8e-29 131.7 125 61.6
Potri.009G108700 Populus trichocarpa HOM05D004388 ORTHO05D005106 3.8e-29 131.7 123 62.6
Thecc.02G028000 Theobroma cacao HOM05D004388 ORTHO05D005106 5.0e-29 131.3 123 63.4
Potri.004G147300 Populus trichocarpa HOM05D004388 ORTHO05D005106 1.1e-28 130.2 122 57.4
Sabra14G0026600 Salix brachista HOM05D004388 ORTHO05D005106 1.1e-28 130.2 125 59.2
TAR376G0986 Trochodendron aralioides HOM05D004388 ORTHO05D005106 1.1e-28 130.2 124 62.1
Gorai.010G015700 Gossypium raimondii HOM05D004388 ORTHO05D005106 1.5e-28 129.8 128 60.9
Gohir.D02G236000 Gossypium hirsutum HOM05D004388 ORTHO05D005106 2.5e-28 129.0 124 62.1
Oeu034076.1 Olea europaea HOM05D004388 ORTHO05D005106 4.3e-28 128.3 121 63.6
Prupe.8G112900 Prunus persica HOM05D004388 ORTHO05D005106 4.3e-28 128.3 128 60.9
THA.LOC104803691 Tarenaya hassleriana HOM05D004388 ORTHO05D005106 4.3e-28 128.3 126 58.7
CiPaw.16G051700 Carya illinoinensis HOM05D004388 ORTHO05D005106 5.6e-28 127.9 122 60.7
Sc15g0006590 Simmondsia chinensis HOM05D004388 ORTHO05D005106 5.6e-28 127.9 125 62.4
ClCG02G005540 Citrullus lanatus HOM05D004388 ORTHO05D005106 7.3e-28 127.5 126 61.9
COL.COLO4_17768 Corchorus olitorius HOM05D004388 ORTHO05D005106 7.3e-28 127.5 125 62.4
Ah.09g229630 Amaranthus hybridus HOM05D004388 ORTHO05D005106 9.5e-28 127.1 126 62.7
Cpa.g.sc64.17 Carica papaya HOM05D004388 ORTHO05D005106 9.5e-28 127.1 124 60.5
MELO3C018419.2 Cucumis melo HOM05D004388 ORTHO05D005106 9.5e-28 127.1 126 61.1
Eucgr.G01518 Eucalyptus grandis HOM05D004388 ORTHO05D005106 9.5e-28 127.1 122 58.2
Glyma.20G008600 Glycine max HOM05D004388 ORTHO05D005106 9.5e-28 127.1 129 62.8
Gorai.002G214600 Gossypium raimondii HOM05D004388 ORTHO05D005106 9.5e-28 127.1 121 63.6
Gorai.005G264100 Gossypium raimondii HOM05D004388 ORTHO05D005106 9.5e-28 127.1 124 61.3
CANSAT25G3863 Cannabis sativa HOM05D004388 ORTHO05D005106 1.2e-27 126.7 125 60.0
Ciclev10030439m.g Citrus clementina HOM05D004388 ORTHO05D005106 1.2e-27 126.7 126 60.3
Gohir.D01G173000 Gossypium hirsutum HOM05D004388 ORTHO05D005106 1.2e-27 126.7 121 63.6
Nn5g29406 Nelumbo nucifera HOM05D004388 ORTHO05D005106 1.2e-27 126.7 127 60.6
QL03p018404 Quercus lobata HOM05D004388 ORTHO05D005106 1.2e-27 126.7 121 62.0
Thecc.08G017000 Theobroma cacao HOM05D004388 ORTHO05D005106 1.2e-27 126.7 128 58.6
Duzib248G0675 Durio zibethinus HOM05D004388 ORTHO05D005106 1.6e-27 126.3 120 60.0
Phvul.003G011200 Phaseolus vulgaris HOM05D004388 ORTHO05D005106 1.6e-27 126.3 125 61.6
FvH4_7g04430 Fragaria vesca HOM05D004388 ORTHO05D005106 2.1e-27 125.9 124 58.1
FAN06G3575 Fragaria x ananassa HOM05D004388 ORTHO05D005106 2.1e-27 125.9 124 58.1
Cc02_g18220 Coffea canephora HOM05D004388 ORTHO05D005106 2.8e-27 125.6 126 59.5
Gohir.A01G181900 Gossypium hirsutum HOM05D004388 ORTHO05D005106 2.8e-27 125.6 120 62.5
FAN06G4461 Fragaria x ananassa HOM05D004388 ORTHO05D005106 3.6e-27 125.2 124 58.1
QL11p039202 Quercus lobata HOM05D004388 ORTHO05D005106 4.7e-27 124.8 121 60.3
Aqoxy6G00936 Aquilegia oxysepala HOM05D004388 ORTHO05D005106 6.1e-27 124.4 129 58.1
CiPaw.05G058500 Carya illinoinensis HOM05D004388 ORTHO05D005106 6.1e-27 124.4 121 61.2
Nn6g32144 Nelumbo nucifera HOM05D004388 ORTHO05D005106 6.1e-27 124.4 129 60.5
EL10Ac1g01755 Beta vulgaris HOM05D004388 ORTHO05D005106 1.0e-26 123.6 127 58.3
CSS0016442 Camellia sinensis var. sinensis HOM05D004388 ORTHO05D005106 1.0e-26 123.6 125 60.8
CSS0020304 Camellia sinensis var. sinensis HOM05D004388 ORTHO05D005106 1.0e-26 123.6 125 60.8
Cfa004944 Carpinus fangiana HOM05D004388 ORTHO05D005106 1.0e-26 123.6 101 68.3
TAR625G0696 Trochodendron aralioides HOM05D004388 ORTHO05D005106 1.0e-26 123.6 110 61.8
Ca_12477_v3 Cicer arietinum L. HOM05D004388 ORTHO05D005106 1.4e-26 123.2 124 59.7
Gohir.A03G214500 Gossypium hirsutum HOM05D004388 ORTHO05D005106 1.4e-26 123.2 124 58.9
MBI16_g31481_MAGBIO Magnolia biondii HOM05D004388 ORTHO05D005106 1.4e-26 123.2 128 56.2
FAN03G2535 Fragaria x ananassa HOM05D004388 ORTHO05D005106 1.8e-26 122.9 123 57.7
CAN.G322.84 Capsicum annuum HOM05D004388 ORTHO05D005106 2.3e-26 122.5 119 63.0
CsaV3_7G010090 Cucumis sativus L. HOM05D004388 ORTHO05D005106 3.0e-26 122.1 126 60.3
FAN10G0172 Fragaria x ananassa HOM05D004388 ORTHO05D005106 3.0e-26 122.1 124 57.3
Peaxi162Scf00684g00563 Petunia axillaris HOM05D004388 ORTHO05D005106 3.0e-26 122.1 123 60.2
VMungo1215G1405 Vigna mungo HOM05D004388 ORTHO05D005106 3.0e-26 122.1 120 60.8
FAN26G1198 Fragaria x ananassa HOM05D004388 ORTHO05D005106 4.0e-26 121.7 123 57.7
FAN28G0470 Fragaria x ananassa HOM05D004388 ORTHO05D005106 4.0e-26 121.7 123 57.7
Lsat_1_v5_gn_7_88020 Lactuca sativa HOM05D004388 ORTHO05D005106 4.0e-26 121.7 124 59.7
Lalb_Chr10g0095391 Lupinus albus HOM05D004388 ORTHO05D005106 4.0e-26 121.7 121 60.3
Nitab4.5_0001401g0180 Nicotiana tabacum HOM05D004388 ORTHO05D005106 4.0e-26 121.7 119 60.5
FvH4_1g27200 Fragaria vesca HOM05D004388 ORTHO05D005106 5.2e-26 121.3 123 56.9
FvH4_2g07330 Fragaria vesca HOM05D004388 ORTHO05D005106 5.2e-26 121.3 123 56.9
FAN24G3543 Fragaria x ananassa HOM05D004388 ORTHO05D005106 5.2e-26 121.3 123 56.9
FAN27G3490 Fragaria x ananassa HOM05D004388 ORTHO05D005106 5.2e-26 121.3 123 56.9
SalBow6G5992 Salvia bowleyana HOM05D004388 ORTHO05D005106 5.2e-26 121.3 120 57.5
Atru.BG.71.p Acer truncatum HOM05D004388 ORTHO05D005106 6.8e-26 120.9 94 69.1
CSS0032006 Camellia sinensis var. sinensis HOM05D004388 ORTHO05D005106 6.8e-26 120.9 103 64.1
FAN15G0910 Fragaria x ananassa HOM05D004388 ORTHO05D005106 6.8e-26 120.9 120 57.5
Nitab4.5_0008194g0060 Nicotiana tabacum HOM05D004388 ORTHO05D005106 6.8e-26 120.9 119 59.7
PSO170G0356 Papaver somniferum HOM05D004388 ORTHO05D005106 8.9e-26 120.6 122 57.4
Sopen10g022090 Solanum pennellii HOM05D004388 ORTHO05D005106 1.2e-25 120.2 125 55.2
CARHR118500 Cardamine hirsuta HOM05D004388 ORTHO05D005106 1.5e-25 119.8 130 57.7
Hma1.2p1_1527F.1_g289065 Hydrangea macrophylla HOM05D004388 ORTHO05D005106 1.5e-25 119.8 124 55.6
MD05G1072400 Malus domestica HOM05D004388 ORTHO05D005106 1.5e-25 119.8 129 55.0
RcHm_v2.0_Chr3g0487591 Rosa chinensis HOM05D004388 ORTHO05D005106 1.5e-25 119.8 124 55.6
Solyc01g109040.4 Solanum lycopersicum HOM05D004388 ORTHO05D005106 1.5e-25 119.8 103 67.0
DCAR_001610 Daucus carota HOM05D004388 ORTHO05D005106 2.0e-25 119.4 124 56.5
FAN19G2330 Fragaria x ananassa HOM05D004388 ORTHO05D005106 2.0e-25 119.4 123 56.1
FAN28G0922 Fragaria x ananassa HOM05D004388 ORTHO05D005106 2.0e-25 119.4 123 56.9
TWI12G0249 Tripterygium wilfordii HOM05D004388 ORTHO05D005106 2.0e-25 119.4 130 60.0
FAN23G2994 Fragaria x ananassa HOM05D004388 ORTHO05D005106 2.6e-25 119.0 123 56.9
PGR042G3241 Punica granatum HOM05D004388 ORTHO05D005106 2.6e-25 119.0 100 70.0
BcaC07g40816 Brassica carinata HOM05D004388 ORTHO05D005106 3.4e-25 118.6 127 59.1
C08p38090 Brassica napus HOM05D004388 ORTHO05D005106 3.4e-25 118.6 127 59.1
BolC8t51384H Brassica oleracea HOM05D004388 ORTHO05D005106 3.4e-25 118.6 127 59.1
Sopen01g051240 Solanum pennellii HOM05D004388 ORTHO05D005106 3.4e-25 118.6 119 62.2
ATR0733G197 Amborella trichopoda HOM05D004388 ORTHO05D005106 4.4e-25 118.2 122 55.7
Peaxi162Scf00016g01338 Petunia axillaris HOM05D004388 ORTHO05D005106 4.4e-25 118.2 117 61.5
PGSC0003DMG400006208 Solanum tuberosum HOM05D004388 ORTHO05D005106 4.4e-25 118.2 125 57.6
PGSC0003DMG402025831 Solanum tuberosum HOM05D004388 ORTHO05D005106 5.8e-25 117.9 119 62.2
Duzib052G1120 Durio zibethinus HOM05D004388 ORTHO05D005106 7.5e-25 117.5 124 58.1
Duzib248G1645 Durio zibethinus HOM05D004388 ORTHO05D005106 9.8e-25 117.1 124 59.7
Hma1.2p1_0584F.1_g183220 Hydrangea macrophylla HOM05D004388 ORTHO05D005106 9.8e-25 117.1 127 57.5
Sed0011034 Sechium edule HOM05D004388 ORTHO05D005106 9.8e-25 117.1 123 57.7
MSTRG.20123 Avicennia marina HOM05D004388 ORTHO05D005106 1.3e-24 116.7 121 59.5
A09p55160 Brassica napus HOM05D004388 ORTHO05D005106 1.3e-24 116.7 124 58.9
BraA09t40924Z Brassica rapa HOM05D004388 ORTHO05D005106 1.3e-24 116.7 124 58.9
BcaB01g03018 Brassica carinata HOM05D004388 ORTHO05D005106 1.7e-24 116.3 100 66.0
AUR62033874 Chenopodium quinoa HOM05D004388 ORTHO05D005106 1.7e-24 116.3 119 56.3
AUR62040093 Chenopodium quinoa HOM05D004388 ORTHO05D005106 1.7e-24 116.3 119 56.3
Duzib248G0127 Durio zibethinus HOM05D004388 ORTHO05D005106 1.7e-24 116.3 124 59.7
AT2G26500 Arabidopsis thaliana HOM05D004388 ORTHO05D005106 2.2e-24 115.9 130 56.2
Carub.0004s0666 Capsella rubella HOM05D004388 ORTHO05D005106 2.2e-24 115.9 130 56.2
Migut.B00292 Erythranthe guttata HOM05D004388 ORTHO05D005106 2.2e-24 115.9 119 53.8
Medtr1g034260 Medicago truncatula HOM05D004388 ORTHO05D005106 2.2e-24 115.9 128 58.6
Sp4g07480 Schrenkiella parvula HOM05D004388 ORTHO05D005106 2.2e-24 115.9 127 59.1
AL4G19340 Arabidopsis lyrata HOM05D004388 ORTHO05D005106 2.9e-24 115.5 130 56.2
Thhalv10001257m.g Eutrema salsugineum HOM05D004388 ORTHO05D005106 2.9e-24 115.5 101 62.4
DCAR_000094 Daucus carota HOM05D004388 ORTHO05D005106 6.4e-24 114.4 122 54.1
DCAR_029046 Daucus carota HOM05D004388 ORTHO05D005106 6.4e-24 114.4 122 54.1
Lalb_Chr01g0003011 Lupinus albus HOM05D004388 ORTHO05D005106 6.4e-24 114.4 105 63.8
TWI36G1636 Tripterygium wilfordii HOM05D004388 ORTHO05D005106 6.4e-24 114.4 129 55.0
HPP92_017776 Vanilla planifolia HOM05D004388 ORTHO05D005106 6.4e-24 114.4 123 53.7
PSO541G0781 Papaver somniferum HOM05D004388 ORTHO05D005106 8.3e-24 114.0 110 60.9
Aa31LG5G9370 Aethionema arabicum HOM05D004388 ORTHO05D005106 1.1e-23 113.6 124 56.5
Duzib132G0841 Durio zibethinus HOM05D004388 ORTHO05D005106 1.4e-23 113.2 126 57.1
HanXRQChr16g0506081 Helianthus annuus HOM05D004388 ORTHO05D005106 3.2e-23 112.1 124 53.2
HanXRQChr04g0128391 Helianthus annuus HOM05D004388 ORTHO05D005106 4.1e-23 111.7 121 54.5
ECA236G2461 Erigeron canadensis HOM05D004388 ORTHO05D005106 7.0e-23 110.9 125 55.2
arahy.Tifrunner.gnm1.ann1.RG9LRA Arachis hypogaea HOM05D004388 ORTHO05D005106 6.0e-22 107.8 126 55.6
MD10G1086700 Malus domestica HOM05D004388 ORTHO05D005106 6.0e-22 107.8 102 63.7
arahy.Tifrunner.gnm1.ann1.ISKM3Z Arachis hypogaea HOM05D004388 ORTHO05D005106 1.7e-21 106.3 122 53.3
FAN20G1062 Fragaria x ananassa HOM05D004388 ORTHO05D005106 2.3e-21 105.9 99 60.6
unitig_21.g20762 Utricularia gibba HOM05D004388 ORTHO05D005106 5.0e-21 104.8 123 56.1
unitig_744.g24243 Utricularia gibba HOM05D004388 ORTHO05D005106 5.0e-21 104.8 122 56.6
Os03g0765900 Oryza sativa ssp. japonica HOM05D004388 ORTHO05D005106 4.3e-20 101.7 122 51.6
Psat6g097040 Pisum sativum HOM05D004388 ORTHO05D005106 8.0e-19 97.4 132 51.5
unitig_0.g849 Utricularia gibba HOM05D004388 ORTHO05D005106 1.1e-18 97.1 121 52.9
Potri.002G130000 Populus trichocarpa HOM05D004388 ORTHO05D005106 1.4e-18 96.7 105 54.3
SGA_v2.0_scaffold58G20597 Striga asiatica HOM05D004388 ORTHO05D005106 5.2e-18 94.7 126 47.6
Actinidia00479 Actinidia chinensis HOM05D000395 ORTHO05D005106 6.8e-18 94.4 126 46.8
Pp3c5_10730 Physcomitrium patens HOM05D004388 ORTHO05D005106 6.8e-18 94.4 121 49.6
AagrBONN_evm.TU.Sc2ySwM_228.5818 Anthoceros agrestis HOM05D004388 ORTHO05D005106 3.4e-17 92.0 92 57.6
Pp3c6_20300 Physcomitrium patens HOM05D004388 ORTHO05D005106 3.7e-16 88.6 117 47.0
Eucgr.I01216 Eucalyptus grandis HOM05D004388 ORTHO05D005106 4.9e-16 88.2 109 51.4
Zm00001eb058590 Zea mays HOM05D004388 ORTHO05D005106 4.9e-16 88.2 107 52.3
Zm00001eb214080 Zea mays HOM05D004388 ORTHO05D005106 6.4e-16 87.8 115 50.4
Rhsim05G0079000 Rhododendron simsii HOM05D004388 ORTHO05D005106 2.4e-15 85.9 127 51.2
TPR.G40836 Trifolium pratense HOM05D004388 ORTHO05D005106 1.2e-14 83.6 73 64.4
CDE01G0191 Ceratophyllum demersum HOM05D004388 ORTHO05D005106 3.3e-12 75.5 58 75.9
Mapoly0043s0110 Marchantia polymorpha HOM05D004388 ORTHO05D005106 3.3e-12 75.5 123 39.8
BcaB08g35304 Brassica carinata HOM05D004388 ORTHO05D005106 1.8e-10 69.7 46 80.4
SMO361G0239 Selaginella moellendorffii HOM05D004388 ORTHO05D005106 3.1e-10 68.9 92 45.7
CBR_g48936 Chara braunii HOM05D004388 ORTHO05D005106 4.0e-10 68.6 113 44.2
Oeu010570.1 Olea europaea HOM05D000395 ORTHO05D000088 4.4e-09 65.1 74 52.7
Psat4g068600 Pisum sativum HOM05D004388 ORTHO05D005106 9.2e-07 57.4 110 43.6
GSVIVG01031853001 Vitis vinifera HOM05D008110 ORTHO05D005106 1.6e-06 56.6 71 43.7


User provided reference genes

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