Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.04G033200 Glycine max HOM05D006576 ORTHO05D008644 0.0e+00 1240.3 594 100.0
Glyma.06G033200 Glycine max HOM05D006576 ORTHO05D008644 0.0e+00 1211.4 594 97.1
VMungo1309G2241 Vigna mungo HOM05D006576 ORTHO05D008644 0.0e+00 1196.8 594 95.1
Phvul.009G056900 Phaseolus vulgaris HOM05D006576 ORTHO05D008644 0.0e+00 1192.9 594 95.1
Lj1g0002309 Lotus japonicus HOM05D006576 ORTHO05D008644 0.0e+00 1169.5 594 92.3
Lalb_Chr11g0062371 Lupinus albus HOM05D006576 ORTHO05D008644 0.0e+00 1153.7 594 91.1
Medtr3g111730 Medicago truncatula HOM05D006576 ORTHO05D008644 0.0e+00 1141.3 592 91.0
Ca_15522_v3 Cicer arietinum L. HOM05D006576 ORTHO05D008644 0.0e+00 1134.4 584 91.4
arahy.Tifrunner.gnm1.ann1.G51JN1 Arachis hypogaea HOM05D006576 ORTHO05D008644 0.0e+00 1123.6 594 88.6
arahy.Tifrunner.gnm1.ann1.N2LUF1 Arachis hypogaea HOM05D006576 ORTHO05D008644 0.0e+00 1122.5 594 88.2
Psat0s4808g0040 Pisum sativum HOM05D006576 ORTHO05D008644 0.0e+00 1110.1 612 85.8
QL02p007885 Quercus lobata HOM05D006576 ORTHO05D008644 7.6e-309 1063.1 638 77.4
Gorai.002G129100 Gossypium raimondii HOM05D006576 ORTHO05D008644 4.9e-308 1060.4 593 81.3
RcHm_v2.0_Chr6g0300731 Rosa chinensis HOM05D006576 ORTHO05D008644 6.4e-308 1060.1 594 80.8
Gohir.D01G105100 Gossypium hirsutum HOM05D006576 ORTHO05D008644 1.4e-307 1058.9 593 81.1
Manes.11G048300 Manihot esculenta HOM05D006576 ORTHO05D008644 1.9e-307 1058.5 593 82.3
MD15G1029800 Malus domestica HOM05D006576 ORTHO05D008644 3.5e-306 1054.3 594 80.1
Gohir.A01G116700 Gossypium hirsutum HOM05D006576 ORTHO05D008644 6.0e-306 1053.5 593 80.9
TWI36G0276 Tripterygium wilfordii HOM05D006576 ORTHO05D008644 1.7e-305 1052.0 594 81.6
FvH4_2g40020 Fragaria vesca HOM05D006576 ORTHO05D008644 3.0e-305 1051.2 594 80.3
Thecc.08G024000 Theobroma cacao HOM05D006576 ORTHO05D008644 6.6e-305 1050.0 585 82.2
Sabra14G0140900 Salix brachista HOM05D006576 ORTHO05D008644 4.3e-304 1047.3 595 81.0
TAR381G1568 Trochodendron aralioides HOM05D006576 ORTHO05D008644 4.3e-304 1047.3 594 79.8
TWI12G0537 Tripterygium wilfordii HOM05D006576 ORTHO05D008644 1.3e-303 1045.8 594 80.6
Potri.014G180700 Populus trichocarpa HOM05D006576 ORTHO05D008644 3.6e-303 1044.3 595 80.5
CsaV3_3G044990 Cucumis sativus L. HOM05D006576 ORTHO05D008644 6.2e-303 1043.5 594 80.0
Ciclev10003149m.g Citrus clementina HOM05D006576 ORTHO05D008644 4.0e-302 1040.8 592 80.1
Peaxi162Scf00690g00125 Petunia axillaris HOM05D006576 ORTHO05D008644 6.9e-302 1040.0 594 78.5
Sed0024937 Sechium edule HOM05D006576 ORTHO05D008644 1.2e-301 1039.3 594 80.1
FAN27G3021 Fragaria x ananassa HOM05D006576 ORTHO05D008644 1.5e-301 1038.9 594 79.3
MELO3C003867.2 Cucumis melo HOM05D006576 ORTHO05D008644 2.6e-301 1038.1 594 79.5
Hma1.2p1_0203F.1_g086540 Hydrangea macrophylla HOM05D006576 ORTHO05D008644 2.6e-301 1038.1 593 79.1
CAN.G1126.39 Capsicum annuum HOM05D006576 ORTHO05D008644 1.3e-300 1035.8 594 78.8
Cpa.g.sc64.67 Carica papaya HOM05D006576 ORTHO05D008644 2.2e-300 1035.0 592 79.2
MD08G1033200 Malus domestica HOM05D006576 ORTHO05D008644 2.2e-300 1035.0 594 79.3
Nitab4.5_0012039g0010 Nicotiana tabacum HOM05D006576 ORTHO05D008644 3.8e-300 1034.2 601 78.0
ClCG05G019150 Citrullus lanatus HOM05D006576 ORTHO05D008644 4.9e-300 1033.9 587 80.2
CiPaw.16G055000 Carya illinoinensis HOM05D006576 ORTHO05D008644 1.1e-299 1032.7 594 79.5
CSS0022363 Camellia sinensis var. sinensis HOM05D006576 ORTHO05D008644 1.9e-299 1031.9 576 81.4
Prupe.1G381700 Prunus persica HOM05D006576 ORTHO05D008644 4.2e-299 1030.8 594 79.6
Cc10_g03100 Coffea canephora HOM05D006576 ORTHO05D008644 5.4e-299 1030.4 594 78.1
Solyc04g080140.4 Solanum lycopersicum HOM05D006576 ORTHO05D008644 2.7e-298 1028.1 594 78.5
MSTRG.25158 Avicennia marina HOM05D006576 ORTHO05D008644 7.9e-298 1026.5 593 77.6
Sopen04g033720 Solanum pennellii HOM05D006576 ORTHO05D008644 7.9e-298 1026.5 594 78.3
HanXRQChr04g0105541 Helianthus annuus HOM05D006576 ORTHO05D008644 3.0e-297 1024.6 592 78.2
Lj4A42T76 Lonicera japonica HOM05D006576 ORTHO05D008644 5.6e-296 1020.4 609 77.0
Migut.C00705 Erythranthe guttata HOM05D006576 ORTHO05D008644 4.8e-295 1017.3 593 76.6
GSVIVG01009681001 Vitis vinifera HOM05D006576 ORTHO05D008644 1.8e-294 1015.4 592 80.2
Nitab4.5_0000110g0470 Nicotiana tabacum HOM05D006576 ORTHO05D008644 2.4e-294 1015.0 594 77.8
COL.COLO4_26345 Corchorus olitorius HOM05D006576 ORTHO05D008644 4.0e-294 1014.2 593 78.6
DCAR_019521 Daucus carota HOM05D006576 ORTHO05D008644 4.0e-294 1014.2 595 78.7
Nn1g05071 Nelumbo nucifera HOM05D006576 ORTHO05D008644 4.0e-294 1014.2 594 76.9
Rhsim06G0035200 Rhododendron simsii HOM05D006576 ORTHO05D008644 4.0e-294 1014.2 629 74.1
PGR083G0445 Punica granatum HOM05D006576 ORTHO05D008644 3.4e-293 1011.1 594 77.9
Atru.BG.235.p Acer truncatum HOM05D006576 ORTHO05D008644 4.5e-293 1010.7 589 80.0
Lsat_1_v5_gn_1_17900 Lactuca sativa HOM05D006576 ORTHO05D008644 7.6e-293 1010.0 584 77.6
Haze_17991 Corylus avellana HOM05D006576 ORTHO05D008644 9.9e-293 1009.6 652 73.2
THA.LOC104822840 Tarenaya hassleriana HOM05D006576 ORTHO05D008644 4.2e-291 1004.2 593 76.6
CANSAT25G2025 Cannabis sativa HOM05D006576 ORTHO05D008644 9.3e-291 1003.0 588 79.3
Actinidia15312 Actinidia chinensis HOM05D006576 ORTHO05D008644 1.2e-290 1002.7 557 81.7
Atru.chr13.516 Acer truncatum HOM05D006576 ORTHO05D008644 3.0e-289 998.0 592 78.2
SalBow7G4023 Salvia bowleyana HOM05D006576 ORTHO05D008644 7.4e-288 993.4 613 74.1
Hund26593 Selenicereus undatus HOM05D006576 ORTHO05D008644 1.6e-287 992.3 591 76.8
Sp1g33910 Schrenkiella parvula HOM05D006576 ORTHO05D008644 1.8e-286 988.8 592 75.3
EL10Ac1g01831 Beta vulgaris HOM05D006576 ORTHO05D008644 3.1e-286 988.0 593 75.4
Thhalv10011304m.g Eutrema salsugineum HOM05D006576 ORTHO05D008644 6.9e-286 986.9 592 74.8
Carub.0001s3555 Capsella rubella HOM05D006576 ORTHO05D008644 1.5e-285 985.7 592 75.0
BcaB04g17577 Brassica carinata HOM05D006576 ORTHO05D008644 3.4e-285 984.6 592 74.5
AT1G45150 Arabidopsis thaliana HOM05D006576 ORTHO05D008644 4.5e-285 984.2 592 75.2
ECA247G3618 Erigeron canadensis HOM05D006576 ORTHO05D008644 4.5e-285 984.2 566 78.3
CSS0029857 Camellia sinensis var. sinensis HOM05D006576 ORTHO05D008644 5.8e-285 983.8 540 83.1
FAN20G0603 Fragaria x ananassa HOM05D006576 ORTHO05D008644 5.8e-285 983.8 594 76.4
SGA_v2.0_scaffold24G10239 Striga asiatica HOM05D006576 ORTHO05D008644 1.0e-284 983.0 590 75.8
A08p06220 Brassica napus HOM05D006576 ORTHO05D008644 2.5e-283 978.4 592 74.2
AUR62033848 Chenopodium quinoa HOM05D006576 ORTHO05D008644 3.2e-283 978.0 593 74.9
Aqoxy6G01046 Aquilegia oxysepala HOM05D006576 ORTHO05D008644 9.3e-283 976.5 594 74.9
BraA08t32625Z Brassica rapa HOM05D006576 ORTHO05D008644 1.2e-282 976.1 592 73.8
Eucgr.F01554 Eucalyptus grandis HOM05D006576 ORTHO05D008644 3.3e-280 968.0 598 75.1
BcaC07g37274 Brassica carinata HOM05D006576 ORTHO05D008644 4.3e-280 967.6 592 73.8
C08p07030 Brassica napus HOM05D006576 ORTHO05D008644 4.3e-280 967.6 592 73.8
BolC8t47545H Brassica oleracea HOM05D006576 ORTHO05D008644 4.3e-280 967.6 592 73.8
Ah.05g167470 Amaranthus hybridus HOM05D006576 ORTHO05D008644 7.4e-280 966.8 593 74.2
vmacro21626 Vaccinium macrocarpon HOM05D006576 ORTHO05D008644 2.4e-278 961.8 745 63.1
PSO675G1390 Papaver somniferum HOM05D006576 ORTHO05D008644 1.6e-274 949.1 593 72.7
AL1G52790 Arabidopsis lyrata HOM05D006576 ORTHO05D008644 6.7e-273 943.7 558 75.6
ATR0733G192 Amborella trichopoda HOM05D006576 ORTHO05D008644 1.8e-270 935.6 594 70.9
PSO541G0394 Papaver somniferum HOM05D006576 ORTHO05D008644 1.1e-264 916.4 593 71.2
Duzib093G2111 Durio zibethinus HOM05D006576 ORTHO05D008644 9.4e-259 896.7 594 71.4
Zm00001eb107720 Zea mays HOM05D006576 ORTHO05D008644 4.7e-258 894.4 594 67.2
Os07g0581300 Oryza sativa ssp. japonica HOM05D006576 ORTHO05D008644 7.9e-258 893.6 594 66.8
CDE04G1970 Ceratophyllum demersum HOM05D006576 ORTHO05D008644 1.8e-257 892.5 575 70.1
FAN15G1632 Fragaria x ananassa HOM05D006576 ORTHO05D008644 4.7e-250 867.8 586 70.8
Sc02g0006340 Simmondsia chinensis HOM05D006576 ORTHO05D008644 1.9e-235 819.3 502 74.1
Mapoly0015s0075 Marchantia polymorpha HOM05D006576 ORTHO05D008644 1.8e-230 802.7 594 60.8
Pp3c21_15170 Physcomitrium patens HOM05D006576 ORTHO05D008644 1.3e-223 780.0 593 60.7
SMO367G0262 Selaginella moellendorffii HOM05D006576 ORTHO05D008644 1.1e-222 776.9 595 60.3
CARHR036240 Cardamine hirsuta HOM05D006576 ORTHO05D008644 2.4e-190 669.5 363 79.3
Hma1.2p1_0203F.1_g086550 Hydrangea macrophylla HOM05D006576 ORTHO05D008644 3.2e-190 669.1 467 68.7
Dinv36060 Davidia involucrata HOM05D006576 ORTHO05D008644 9.1e-153 544.7 314 81.5
AUR62041679 Chenopodium quinoa HOM05D006576 ORTHO05D008644 1.0e-151 541.2 353 71.1
Oeu005363.1 Olea europaea HOM05D006576 ORTHO05D008644 1.7e-146 523.9 321 76.0
unitig_578.g16727 Utricularia gibba HOM05D006576 ORTHO05D008644 1.2e-144 517.7 500 53.0
CBR_g55233 Chara braunii HOM05D006576 ORTHO05D008644 9.7e-139 498.0 533 48.2
AUR62041680 Chenopodium quinoa HOM05D006576 ORTHO05D008644 2.0e-120 437.2 241 79.3
CBR_g6514 Chara braunii HOM05D006576 ORTHO05D008644 7.6e-83 312.4 702 32.1
SEGI_38008 Sequoiadendron giganteum HOM05D006576 ORTHO05D008644 6.2e-77 292.7 152 83.6
SHI46795 Sapria himalayana HOM05D006576 ORTHO05D008644 8.4e-74 282.3 245 59.2
Lsat_1_v5_gn_3_960 Lactuca sativa HOM05D006576 ORTHO05D008644 3.4e-59 233.8 198 58.1
Nn2g14734 Nelumbo nucifera HOM05D006576 ORTHO05D008644 2.4e-28 131.3 112 59.8
Nn7g38200 Nelumbo nucifera HOM05D006576 ORTHO05D008644 5.3e-28 130.2 71 83.1
Atru.chr11.1906 Acer truncatum HOM05D006576 ORTHO05D008644 9.4e-25 119.4 77 66.2
MBI18_g06878_MAGBIO Magnolia biondii HOM05D006576 ORTHO05D008644 1.3e-21 109.0 70 65.7
MBI18_g09633_MAGBIO Magnolia biondii HOM05D006576 ORTHO05D008644 1.7e-21 108.6 71 63.4
MBI13_g29621_MAGBIO Magnolia biondii HOM05D006576 ORTHO05D008644 3.5e-19 100.9 70 61.4
MD05G1053300 Malus domestica HOM05D006576 ORTHO05D248938 7.7e-19 99.8 64 68.8
Zm00001eb326440 Zea mays HOM05D006576 ORTHO05D028753 1.7e-18 98.6 66 69.7
Zm00001eb361570 Zea mays HOM05D006576 ORTHO05D028753 1.7e-18 98.6 66 69.7
Zm00001eb377960 Zea mays HOM05D006576 ORTHO05D028753 1.7e-18 98.6 66 69.7
Zm00001eb171910 Zea mays HOM05D000538 ORTHO05D003297 3.3e-14 84.3 82 48.8
AL4G26800 Arabidopsis lyrata HOM05D006576 ORTHO05D008644 1.1e-12 79.3 99 47.5
MBI18_g23781_MAGBIO Magnolia biondii HOM05D006576 ORTHO05D008644 4.1e-12 77.4 52 61.5
Zm00001eb147180 Zea mays HOM05D014217 ORTHO05D000496 3.6e-08 64.3 69 43.5
CBR_g55378 Chara braunii HOM05D006576 ORTHO05D028753 1.8e-07 62.0 38 78.9
Zm00001eb352490 Zea mays HOM05D006576 ORTHO05D008499 5.2e-07 60.5 39 74.4
Zm00001eb413530 Zea mays HOM05D014217 ORTHO05D000496 1.2e-06 59.3 64 42.2


User provided reference genes

Program Settings