Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.04G033100 Glycine max HOM05D002134 ORTHO05D008658 0.0e+00 1225.3 722 100.0
Glyma.06G033100 Glycine max HOM05D002134 ORTHO05D008658 6.0e-300 1033.9 724 81.6
Phvul.009G057000 Phaseolus vulgaris HOM05D002134 ORTHO05D008658 1.2e-228 797.0 741 67.2
VMungo1309G2241 Vigna mungo HOM05D006576 ORTHO05D008644 1.5e-210 736.9 772 63.1
Lj1g0006718 Lotus japonicus HOM05D002134 ORTHO05D008658 8.9e-179 631.3 757 55.4
Ca_15521_v3 Cicer arietinum L. HOM05D002134 ORTHO05D008658 1.3e-177 627.5 763 56.9
Medtr3g111740 Medicago truncatula HOM05D002134 ORTHO05D008658 2.2e-177 626.7 765 55.8
Lalb_Chr23g0266641 Lupinus albus HOM05D002134 ORTHO05D008658 1.7e-174 617.1 773 56.0
TPR.G12392 Trifolium pratense HOM05D002134 ORTHO05D008658 6.9e-163 578.6 796 52.1
Psat0s2660g0080 Pisum sativum HOM05D002134 ORTHO05D008658 2.8e-156 556.6 796 52.8
arahy.Tifrunner.gnm1.ann1.20CGAG Arachis hypogaea HOM05D002134 ORTHO05D008658 1.1e-144 518.1 792 50.9
Lalb_Chr08g0245851 Lupinus albus HOM05D002134 ORTHO05D008658 7.1e-144 515.4 743 50.2
QL02p007944 Quercus lobata HOM05D002134 ORTHO05D008658 1.5e-138 497.7 798 49.1
arahy.Tifrunner.gnm1.ann1.6UHH7V Arachis hypogaea HOM05D002134 ORTHO05D008658 6.5e-137 492.3 819 48.5
Dinv36064 Davidia involucrata HOM05D002134 ORTHO05D008658 1.6e-127 461.1 773 45.8
Cfa018138 Carpinus fangiana HOM05D002134 ORTHO05D008658 1.2e-122 444.9 681 47.7
Atru.chr8.2604 Acer truncatum HOM05D002134 ORTHO05D008658 4.5e-122 443.0 810 43.6
Atru.chr13.512 Acer truncatum HOM05D002134 ORTHO05D008658 2.2e-121 440.7 818 42.5
Haze_17986 Corylus avellana HOM05D002134 ORTHO05D008658 2.9e-121 440.3 883 41.3
GSVIVG01009687001 Vitis vinifera HOM05D002134 ORTHO05D008658 2.1e-119 434.1 801 42.9
Duzib116G0898 Durio zibethinus HOM05D002134 ORTHO05D008658 1.1e-117 428.3 767 43.9
Manes.05G161600 Manihot esculenta HOM05D002134 ORTHO05D008658 2.0e-117 427.6 776 42.4
Eucgr.F01907 Eucalyptus grandis HOM05D002134 ORTHO05D008658 2.6e-117 427.2 792 42.0
TWI12G0094 Tripterygium wilfordii HOM05D002134 ORTHO05D008658 4.8e-116 422.9 762 43.7
CiPaw.15G075800 Carya illinoinensis HOM05D002134 ORTHO05D008658 1.4e-115 421.4 598 49.3
CANSAT25G1781 Cannabis sativa HOM05D002134 ORTHO05D008658 3.8e-113 413.3 778 43.3
MD08G1033500 Malus domestica HOM05D002134 ORTHO05D008658 2.7e-111 407.1 715 46.4
Actinidia38014 Actinidia chinensis HOM05D002134 ORTHO05D008658 1.0e-110 405.2 578 47.8
CSS0008789 Camellia sinensis var. sinensis HOM05D002134 ORTHO05D008658 1.4e-110 404.8 789 43.6
Thecc.08G024500 Theobroma cacao HOM05D002134 ORTHO05D008658 1.4e-110 404.8 757 42.9
Ciclev10000375m.g Citrus clementina HOM05D002134 ORTHO05D008658 1.2e-109 401.7 767 42.1
Prupe.1G381400 Prunus persica HOM05D002134 ORTHO05D008658 3.4e-109 400.2 690 43.9
Sabra02G0199600 Salix brachista HOM05D002134 ORTHO05D008658 3.5e-106 390.2 781 38.3
MD15G1030200 Malus domestica HOM05D002134 ORTHO05D008658 1.7e-105 387.9 799 44.6
Nn5g29542 Nelumbo nucifera HOM05D002134 ORTHO05D008658 8.5e-105 385.6 815 39.9
TAR376G0546 Trochodendron aralioides HOM05D002134 ORTHO05D008658 7.2e-104 382.5 838 40.2
Potri.002G262800 Populus trichocarpa HOM05D002134 ORTHO05D008658 1.0e-102 378.6 591 44.3
Gohir.D01G104800 Gossypium hirsutum HOM05D002134 ORTHO05D008658 3.0e-102 377.1 781 41.5
Gorai.002G128800 Gossypium raimondii HOM05D002134 ORTHO05D008658 2.0e-101 374.4 781 41.4
vmacro04518 Vaccinium macrocarpon HOM05D002134 ORTHO05D008658 2.6e-101 374.0 719 39.8
DCAR_008767 Daucus carota HOM05D002134 ORTHO05D008658 7.5e-101 372.5 583 44.3
Gohir.A01G116400 Gossypium hirsutum HOM05D002134 ORTHO05D008658 6.3e-100 369.4 758 40.8
MBI16_g17456_MAGBIO Magnolia biondii HOM05D002134 ORTHO05D008658 6.3e-100 369.4 765 41.8
Duzib093G1270 Durio zibethinus HOM05D002134 ORTHO05D008658 3.5e-98 363.6 599 43.1
Rhsim07G0237200 Rhododendron simsii HOM05D002134 ORTHO05D008658 4.2e-96 356.7 615 42.8
Aqoxy6G01051 Aquilegia oxysepala HOM05D002134 ORTHO05D008658 1.4e-94 351.7 776 44.1
Nitab4.5_0000523g0050 Nicotiana tabacum HOM05D002134 ORTHO05D008658 1.4e-91 341.7 809 37.5
Sed0018102 Sechium edule HOM05D002134 ORTHO05D008658 1.4e-91 341.7 792 39.3
ClCG05G019130 Citrullus lanatus HOM05D002134 ORTHO05D008658 7.0e-91 339.3 831 38.3
Nitab4.5_0006995g0020 Nicotiana tabacum HOM05D002134 ORTHO05D008658 1.6e-90 338.2 826 37.3
ECA247G2410 Erigeron canadensis HOM05D002134 ORTHO05D008658 4.6e-90 336.7 579 44.4
FvH4_2g39970 Fragaria vesca HOM05D002134 ORTHO05D008658 7.8e-90 335.9 771 42.4
MELO3C003852.2 Cucumis melo HOM05D002134 ORTHO05D008658 6.6e-89 332.8 824 38.3
PGR031G3893 Punica granatum HOM05D002134 ORTHO05D008658 6.6e-89 332.8 822 38.7
Migut.C00708 Erythranthe guttata HOM05D002134 ORTHO05D008658 8.6e-89 332.4 772 39.8
Cc10_g03060 Coffea canephora HOM05D002134 ORTHO05D008658 1.2e-87 328.6 804 40.0
SalBow7G3154 Salvia bowleyana HOM05D002134 ORTHO05D008658 2.1e-87 327.8 588 43.0
CsaV3_3G045010 Cucumis sativus L. HOM05D002134 ORTHO05D008658 2.8e-87 327.4 821 39.3
Peaxi162Scf00925g00033 Petunia axillaris HOM05D002134 ORTHO05D008658 1.0e-86 325.5 791 36.9
RcHm_v2.0_Chr6g0300781 Rosa chinensis HOM05D002134 ORTHO05D008658 6.8e-86 322.8 789 41.1
SGA_v2.0_scaffold48G18075 Striga asiatica HOM05D002134 ORTHO05D008658 4.4e-85 320.1 801 38.0
FAN27G2069 Fragaria x ananassa HOM05D002134 ORTHO05D008658 3.7e-84 317.0 799 39.5
HanXRQChr04g0105601 Helianthus annuus HOM05D002134 ORTHO05D008658 1.9e-83 314.7 592 43.4
CAN.G52.14 Capsicum annuum HOM05D002134 ORTHO05D008658 3.9e-81 307.0 583 41.9
Lj4A785T29 Lonicera japonica HOM05D002134 ORTHO05D008658 1.4e-78 298.5 454 47.1
Sopen07g013310 Solanum pennellii HOM05D002134 ORTHO05D008658 1.4e-78 298.5 778 36.1
PSO541G2605 Papaver somniferum HOM05D002134 ORTHO05D008658 5.2e-78 296.6 622 40.8
Solyc07g025380.3 Solanum lycopersicum HOM05D002134 ORTHO05D008658 2.0e-77 294.7 780 35.9
PSO675G8956 Papaver somniferum HOM05D002134 ORTHO05D008658 7.5e-77 292.7 683 39.1
FAN15G0789 Fragaria x ananassa HOM05D002134 ORTHO05D003893 5.4e-75 286.6 762 38.2
FAN20G2431 Fragaria x ananassa HOM05D002134 ORTHO05D003893 5.4e-75 286.6 779 39.4
PGSC0003DMG400007581 Solanum tuberosum HOM05D002134 ORTHO05D008658 4.6e-74 283.5 587 40.7
Lsat_1_v5_gn_1_17581 Lactuca sativa HOM05D002134 ORTHO05D008658 3.0e-73 280.8 588 40.6
THA.LOC104813840 Tarenaya hassleriana HOM05D002134 ORTHO05D008658 2.5e-72 277.7 574 42.9
Aa31LG4G5340 Aethionema arabicum HOM05D002134 ORTHO05D008658 1.4e-70 271.9 610 39.8
ATR0733G232 Amborella trichopoda HOM05D002134 ORTHO05D008658 4.0e-70 270.4 577 40.6
AL2G35050 Arabidopsis lyrata HOM05D002134 ORTHO05D008658 4.6e-66 256.9 786 35.8
MBI16_g45959_MAGBIO Magnolia biondii HOM05D002134 ORTHO05D008658 6.0e-66 256.5 721 37.2
Sed0020001 Sechium edule HOM05D002134 ORTHO05D008658 1.6e-63 248.4 676 36.8
BraA07t31617Z Brassica rapa HOM05D002134 ORTHO05D008658 4.7e-63 246.9 586 39.6
Thhalv10019843m.g Eutrema salsugineum HOM05D002134 ORTHO05D008658 8.1e-63 246.1 586 39.6
A07p40750 Brassica napus HOM05D002134 ORTHO05D008658 5.2e-62 243.4 579 40.4
Carub.0002s2196 Capsella rubella HOM05D002134 ORTHO05D008658 1.2e-61 242.3 813 34.4
CARHR068480 Cardamine hirsuta HOM05D002134 ORTHO05D008658 2.9e-60 237.7 825 34.7
Hma1.2p1_0203F.1_g086500 Hydrangea macrophylla HOM05D002134 ORTHO05D008658 1.1e-59 235.7 292 52.1
AT1G75150 Arabidopsis thaliana HOM05D002134 ORTHO05D008658 1.4e-59 235.3 814 33.3
Hund27548 Selenicereus undatus HOM05D002134 ORTHO05D008658 2.1e-58 231.5 549 36.8
Hund27550 Selenicereus undatus HOM05D002134 ORTHO05D008658 2.1e-58 231.5 549 36.8
BcaC08g46941 Brassica carinata HOM05D000061 ORTHO05D008658 3.9e-57 227.3 586 38.1
Sp5g30280 Schrenkiella parvula HOM05D002134 ORTHO05D008658 5.1e-57 226.9 601 38.3
C06p49130 Brassica napus HOM05D002134 ORTHO05D008658 6.6e-57 226.5 585 38.6
BolC6t39947H Brassica oleracea HOM05D002134 ORTHO05D008658 6.6e-57 226.5 585 38.6
unitig_37.g12967 Utricularia gibba HOM05D002134 ORTHO05D008658 1.5e-56 225.3 548 38.1
BcaC08g46976 Brassica carinata HOM05D002134 ORTHO05D008658 5.6e-56 223.4 591 37.4
CDE02G0502 Ceratophyllum demersum HOM05D002134 ORTHO05D008658 2.8e-55 221.1 779 31.2
COL.COLO4_26340 Corchorus olitorius HOM05D005308 ORTHO05D006494 1.1e-54 219.2 680 31.6
EL10Ac1g01833 Beta vulgaris HOM05D002134 ORTHO05D008658 2.4e-54 218.0 675 33.8
Zm00001eb061990 Zea mays HOM05D002134 ORTHO05D008658 4.4e-53 213.8 585 35.0
SEGI_00628 Sequoiadendron giganteum HOM05D002134 ORTHO05D008658 1.3e-49 202.2 777 29.7
Sc02g0006290 Simmondsia chinensis HOM05D002134 ORTHO05D008658 7.3e-48 196.4 548 35.2
Ah.11g043170 Amaranthus hybridus HOM05D002134 ORTHO05D008658 1.5e-45 188.7 659 33.8
AUR62034948 Chenopodium quinoa HOM05D002134 ORTHO05D008658 1.9e-40 171.8 427 36.5
Cpa.g.sc64.74 Carica papaya HOM05D002134 ORTHO05D008658 3.4e-37 161.0 529 36.9
AUR62035457 Chenopodium quinoa HOM05D002134 ORTHO05D008658 4.5e-37 160.6 680 31.2
SHI17315 Sapria himalayana HOM05D002134 ORTHO05D008658 1.9e-35 155.2 622 29.4
Mapoly0032s0034 Marchantia polymorpha HOM05D002134 ORTHO05D008658 4.5e-29 134.0 514 31.9
SMO144G0024 Selaginella moellendorffii HOM05D002134 ORTHO05D008658 5.5e-27 127.1 543 29.5
Cpa.g.sc64.73 Carica papaya HOM05D002134 ORTHO05D008658 2.7e-26 124.8 199 43.2
Oeu036193.1 Olea europaea HOM05D002134 ORTHO05D008658 1.1e-24 119.4 404 33.9
HPP92_018472 Vanilla planifolia HOM05D002134 ORTHO05D008658 1.1e-24 119.4 496 31.9
Pp3c7_550 Physcomitrium patens HOM05D002134 ORTHO05D008658 4.2e-19 100.9 587 26.9
Pp3c7_551 Physcomitrium patens HOM05D002134 ORTHO05D008658 4.2e-19 100.9 587 26.9
HPP92_018471 Vanilla planifolia HOM05D002134 ORTHO05D008658 2.7e-18 98.2 178 41.6
Actinidia29830 Actinidia chinensis HOM05D002134 ORTHO05D008658 5.0e-12 77.4 156 38.5
DCAR_011210 Daucus carota HOM05D001893 ORTHO05D008658 4.4e-08 64.3 57 66.7
Peaxi162Scf00162g00213 Petunia axillaris HOM05D000561 ORTHO05D000514 3.7e-07 61.2 58 58.6


User provided reference genes

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