Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.04G030900 Glycine max HOM05D004108 ORTHO05D004849 8.3e-76 287.0 145 100.0
Glyma.06G031000 Glycine max HOM05D004108 ORTHO05D004849 4.7e-71 271.2 145 93.8
Glyma.06G031100 Glycine max HOM05D004108 ORTHO05D004849 4.9e-60 234.6 145 82.8
Lalb_Chr08g0245901 Lupinus albus HOM05D004108 ORTHO05D004849 5.6e-56 221.1 137 81.0
Ca_13362_v3 Cicer arietinum L. HOM05D004108 ORTHO05D004849 1.0e-49 200.3 143 69.2
Lj1g0012803 Lotus japonicus HOM05D004108 ORTHO05D004849 2.3e-49 199.1 145 69.0
Phvul.009G058900 Phaseolus vulgaris HOM05D004108 ORTHO05D004849 1.1e-48 196.8 153 69.3
TPR.G20143 Trifolium pratense HOM05D004108 ORTHO05D004849 2.4e-46 189.1 146 65.8
Glyma.17G251800 Glycine max HOM05D004108 ORTHO05D004849 9.0e-46 187.2 146 65.8
Glyma.18G124300 Glycine max HOM05D004108 ORTHO05D004849 1.2e-45 186.8 110 90.0
Medtr3g111970 Medicago truncatula HOM05D004108 ORTHO05D004849 4.4e-45 184.9 148 67.6
Ca_15505_v3 Cicer arietinum L. HOM05D004108 ORTHO05D004849 1.7e-44 183.0 145 66.2
VMungo1309G0255 Vigna mungo HOM05D004108 ORTHO05D004849 6.4e-44 181.0 146 66.4
Psat6g008240 Pisum sativum HOM05D004108 ORTHO05D004849 1.9e-43 179.5 147 63.3
Psat5g012160 Pisum sativum HOM05D004108 ORTHO05D004849 2.4e-43 179.1 145 64.1
Glyma.14G073200 Glycine max HOM05D004108 ORTHO05D004849 1.3e-41 173.3 135 65.2
Lj5g0010725 Lotus japonicus HOM05D004108 ORTHO05D004849 1.7e-41 172.9 134 65.7
VMungo0647G0771 Vigna mungo HOM05D004108 ORTHO05D004849 1.9e-40 169.5 150 58.7
Medtr1g022395 Medicago truncatula HOM05D004108 ORTHO05D004849 9.6e-40 167.2 145 58.6
TPR.G12369 Trifolium pratense HOM05D004108 ORTHO05D004849 2.8e-39 165.6 154 59.1
CiPaw.15G080700 Carya illinoinensis HOM05D004108 ORTHO05D004849 1.8e-38 162.9 143 58.0
Phvul.001G013200 Phaseolus vulgaris HOM05D004108 ORTHO05D004849 2.9e-36 155.6 140 58.6
Thecc.08G029500 Theobroma cacao HOM05D004108 ORTHO05D004849 3.8e-36 155.2 149 54.4
Potri.005G228600 Populus trichocarpa HOM05D004108 ORTHO05D004849 2.4e-35 152.5 146 56.2
Duzib093G0346 Durio zibethinus HOM05D004108 ORTHO05D004849 2.7e-34 149.1 148 52.7
Gorai.009G272400 Gossypium raimondii HOM05D004108 ORTHO05D004849 4.6e-34 148.3 147 53.7
COL.COLO4_26289 Corchorus olitorius HOM05D004108 ORTHO05D004849 7.9e-34 147.5 150 52.0
Duzib116G0345 Durio zibethinus HOM05D004108 ORTHO05D004849 2.3e-33 146.0 148 50.7
Gohir.A05G192800 Gossypium hirsutum HOM05D004108 ORTHO05D004849 2.3e-33 146.0 149 51.7
Gohir.A05G258800 Gossypium hirsutum HOM05D004108 ORTHO05D004849 3.0e-33 145.6 147 53.1
Ciclev10002766m.g Citrus clementina HOM05D004108 ORTHO05D004849 3.9e-33 145.2 149 53.0
Gohir.D05G260600 Gossypium hirsutum HOM05D004108 ORTHO05D004849 3.9e-33 145.2 147 53.1
Gohir.D05G196000 Gossypium hirsutum HOM05D004108 ORTHO05D004849 1.9e-32 142.9 151 50.3
Gorai.009G200900 Gossypium raimondii HOM05D004108 ORTHO05D004849 1.9e-32 142.9 151 50.3
Manes.18G023000 Manihot esculenta HOM05D004108 ORTHO05D004849 4.3e-32 141.7 150 51.3
Sabra05G0176500 Salix brachista HOM05D004108 ORTHO05D004849 4.3e-32 141.7 142 53.5
Lalb_Chr14g0369381 Lupinus albus HOM05D004108 ORTHO05D004849 4.8e-31 138.3 136 58.8
GSVIVG01009730001 Vitis vinifera HOM05D004108 ORTHO05D004849 4.8e-31 138.3 141 50.4
Gohir.D01G103300 Gossypium hirsutum HOM05D004108 ORTHO05D004849 1.8e-30 136.3 145 46.9
Gohir.A01G114900 Gossypium hirsutum HOM05D004108 ORTHO05D004849 4.0e-30 135.2 147 49.0
Rhsim06G0031200 Rhododendron simsii HOM05D004108 ORTHO05D004849 1.5e-29 133.3 146 48.6
MSTRG.22304 Avicennia marina HOM05D004108 ORTHO05D004849 2.0e-29 132.9 150 53.3
Hma1.2p1_0203F.1_g086230 Hydrangea macrophylla HOM05D004108 ORTHO05D004849 2.0e-29 132.9 133 54.1
Gorai.002G127100 Gossypium raimondii HOM05D004108 ORTHO05D004849 2.6e-29 132.5 145 45.5
Phvul.009G058800 Phaseolus vulgaris HOM05D004108 ORTHO05D004849 3.4e-29 132.1 135 54.8
PGR083G0993 Punica granatum HOM05D004108 ORTHO05D004849 9.9e-29 130.6 144 48.6
Cfa018174 Carpinus fangiana HOM05D004108 ORTHO05D004849 1.3e-28 130.2 138 50.0
QL02p009008 Quercus lobata HOM05D004108 ORTHO05D004849 1.7e-28 129.8 146 46.6
PGSC0003DMG400003688 Solanum tuberosum HOM05D004108 ORTHO05D004849 2.2e-28 129.4 149 50.3
MELO3C003817.2 Cucumis melo HOM05D004108 ORTHO05D004849 6.4e-28 127.9 146 44.5
Cc10_g02670 Coffea canephora HOM05D004108 ORTHO05D004849 1.1e-27 127.1 140 50.7
CsaV3_3G045320 Cucumis sativus L. HOM05D004108 ORTHO05D004849 3.2e-27 125.6 146 43.8
DCAR_019539 Daucus carota HOM05D001676 ORTHO05D001539 4.2e-27 125.2 143 49.7
Sopen04g034130 Solanum pennellii HOM05D004108 ORTHO05D004849 5.5e-27 124.8 150 48.7
MSTRG.24284 Avicennia marina HOM05D004108 ORTHO05D004849 7.1e-27 124.4 148 52.0
CSS0043508 Camellia sinensis var. sinensis HOM05D004108 ORTHO05D004849 7.1e-27 124.4 142 50.0
ClCG08G014950 Citrullus lanatus HOM05D004108 ORTHO05D004849 7.1e-27 124.4 148 47.3
Eucgr.F01582 Eucalyptus grandis HOM05D004108 ORTHO05D004849 9.3e-27 124.0 135 48.9
Sed0024175 Sechium edule HOM05D004108 ORTHO05D004849 9.3e-27 124.0 150 48.0
Solyc04g080540.2 Solanum lycopersicum HOM05D004108 ORTHO05D004849 9.3e-27 124.0 150 48.0
EL10Ac1g00610 Beta vulgaris HOM05D004108 ORTHO05D004849 1.6e-26 123.2 141 48.2
TWI56G1092 Tripterygium wilfordii HOM05D004108 ORTHO05D004849 1.6e-26 123.2 151 45.7
Actinidia22531 Actinidia chinensis HOM05D004108 ORTHO05D004849 3.5e-26 122.1 143 48.3
CSS0044578 Camellia sinensis var. sinensis HOM05D004108 ORTHO05D004849 4.6e-26 121.7 142 49.3
Potri.002G034500 Populus trichocarpa HOM05D004108 ORTHO05D004849 6.0e-26 121.3 130 48.5
Nitab4.5_0002224g0100 Nicotiana tabacum HOM05D004108 ORTHO05D004849 1.0e-25 120.6 152 48.7
SGA_v2.0_scaffold326G48731 Striga asiatica HOM05D004108 ORTHO05D004849 1.8e-25 119.8 147 45.6
CANSAT25G1850 Cannabis sativa HOM05D004108 ORTHO05D004849 2.3e-25 119.4 140 50.0
Atru.chr13.446 Acer truncatum HOM05D004108 ORTHO05D004849 3.0e-25 119.0 138 45.7
TAR381G0780 Trochodendron aralioides HOM05D004108 ORTHO05D004849 3.0e-25 119.0 118 51.7
CANSAT25G0460 Cannabis sativa HOM05D004108 ORTHO05D004849 3.9e-25 118.6 136 52.2
MELO3C010952.2 Cucumis melo HOM05D004108 ORTHO05D004849 3.9e-25 118.6 146 45.2
Sabra02G0027700 Salix brachista HOM05D004108 ORTHO05D004849 3.9e-25 118.6 140 50.0
Sed0010517 Sechium edule HOM05D004108 ORTHO05D004849 3.9e-25 118.6 145 46.2
AUR62003937 Chenopodium quinoa HOM05D004108 ORTHO05D004849 6.7e-25 117.9 146 47.3
AUR62014478 Chenopodium quinoa HOM05D004108 ORTHO05D004849 6.7e-25 117.9 146 47.3
CsaV3_2G028830 Cucumis sativus L. HOM05D004108 ORTHO05D004849 6.7e-25 117.9 152 47.4
Haze_17929 Corylus avellana HOM05D004108 ORTHO05D004849 1.9e-24 116.3 125 48.8
Rhsim07G0240700 Rhododendron simsii HOM05D004108 ORTHO05D004849 1.9e-24 116.3 140 47.1
RhsimUnG0051600 Rhododendron simsii HOM05D004108 ORTHO05D004849 1.9e-24 116.3 141 46.8
Aqoxy5G01593 Aquilegia oxysepala HOM05D004108 ORTHO05D004849 3.3e-24 115.5 156 44.2
Oeu007023.1 Olea europaea HOM05D004108 ORTHO05D004849 7.4e-24 114.4 145 45.5
ATR0568G230 Amborella trichopoda HOM05D004108 ORTHO05D004849 1.6e-23 113.2 139 44.6
Sc15g0007040 Simmondsia chinensis HOM05D004108 ORTHO05D004849 4.8e-23 111.7 140 47.9
Hund26890 Selenicereus undatus HOM05D004108 ORTHO05D004849 2.4e-22 109.4 142 43.7
Hund29908 Selenicereus undatus HOM05D004108 ORTHO05D004849 2.4e-22 109.4 142 43.7
Migut.N00486 Erythranthe guttata HOM05D004108 ORTHO05D004849 6.9e-22 107.8 131 48.9
Dinv36099 Davidia involucrata HOM05D004108 ORTHO05D004849 2.0e-21 106.3 118 47.5
Lsat_1_v5_gn_4_117601 Lactuca sativa HOM05D004108 ORTHO05D004849 2.6e-21 105.9 133 48.1
THA.LOC104811375 Tarenaya hassleriana HOM05D004108 ORTHO05D004849 2.6e-21 105.9 134 42.5
CDE02G0765 Ceratophyllum demersum HOM05D004108 ORTHO05D004849 3.4e-21 105.5 148 39.9
Prupe.1G377400 Prunus persica HOM05D004108 ORTHO05D004849 4.5e-21 105.1 130 46.2
HanXRQChr05g0156841 Helianthus annuus HOM05D004108 ORTHO05D004849 7.6e-21 104.4 135 45.2
MBI10_g18267_MAGBIO Magnolia biondii HOM05D004108 ORTHO05D004849 7.6e-21 104.4 134 43.3
CDE06G1682 Ceratophyllum demersum HOM05D004108 ORTHO05D004849 1.7e-20 103.2 147 38.1
arahy.Tifrunner.gnm1.ann1.9Q97AW Arachis hypogaea HOM05D004108 ORTHO05D004849 2.2e-20 102.8 137 46.7
PSO675G8146 Papaver somniferum HOM05D004108 ORTHO05D004849 2.2e-20 102.8 143 41.3
Eucgr.F01583 Eucalyptus grandis HOM05D004108 ORTHO05D004849 2.9e-20 102.4 163 39.9
arahy.Tifrunner.gnm1.ann1.FG8SZ8 Arachis hypogaea HOM05D004108 ORTHO05D004849 4.9e-20 101.7 137 46.0
ECA246G2053 Erigeron canadensis HOM05D004108 ORTHO05D004849 1.4e-19 100.1 145 43.4
PSO541G2330 Papaver somniferum HOM05D004108 ORTHO05D004849 1.4e-19 100.1 143 40.6
Lsat_1_v5_gn_5_27881 Lactuca sativa HOM05D004108 ORTHO05D004849 3.2e-19 99.0 135 43.0
HPP92_003110 Vanilla planifolia HOM05D004108 ORTHO05D004849 4.2e-19 98.6 141 41.8
Thhalv10009139m.g Eutrema salsugineum HOM05D004108 ORTHO05D004849 5.5e-19 98.2 136 39.7
MD08G1029700 Malus domestica HOM05D004108 ORTHO05D004849 5.5e-19 98.2 147 38.8
Carub.0001s1910 Capsella rubella HOM05D004108 ORTHO05D004849 7.1e-19 97.8 131 42.0
ECA232G2533 Erigeron canadensis HOM05D004108 ORTHO05D004849 1.2e-18 97.1 151 46.4
BcaB07g31980 Brassica carinata HOM05D004108 ORTHO05D004849 2.1e-18 96.3 131 41.2
HPP92_010562 Vanilla planifolia HOM05D004108 ORTHO05D004849 2.1e-18 96.3 136 46.3
Cpa.g.sc31.39 Carica papaya HOM05D004108 ORTHO05D004849 2.7e-18 95.9 116 44.8
FAN15G0289 Fragaria x ananassa HOM05D004108 ORTHO05D004849 2.7e-18 95.9 150 39.3
FAN27G1128 Fragaria x ananassa HOM05D004108 ORTHO05D004849 2.7e-18 95.9 158 40.5
Sp1g17400 Schrenkiella parvula HOM05D004108 ORTHO05D004849 2.7e-18 95.9 133 40.6
unitig_899.g15617 Utricularia gibba HOM05D004108 ORTHO05D004849 2.7e-18 95.9 135 43.7
FAN20G2373 Fragaria x ananassa HOM05D004108 ORTHO05D004849 7.9e-18 94.4 164 39.0
A06p15710 Brassica napus HOM05D004108 ORTHO05D004849 1.0e-17 94.0 131 40.5
MBI18_g38882_MAGBIO Magnolia biondii HOM05D004108 ORTHO05D004849 1.0e-17 94.0 138 40.6
arahy.Tifrunner.gnm1.ann1.KZM1SZ Arachis hypogaea HOM05D004108 ORTHO05D004849 1.8e-17 93.2 102 52.0
arahy.Tifrunner.gnm1.ann1.RL39CN Arachis hypogaea HOM05D004108 ORTHO05D004849 1.8e-17 93.2 102 52.0
BcaC05g25839 Brassica carinata HOM05D004108 ORTHO05D004849 1.8e-17 93.2 131 40.5
BolC5t30510H Brassica oleracea HOM05D004108 ORTHO05D004849 1.8e-17 93.2 131 40.5
C05p18030 Brassica napus HOM05D004108 ORTHO05D004849 3.0e-17 92.4 137 38.7
BraA06t24680Z Brassica rapa HOM05D004108 ORTHO05D004849 3.0e-17 92.4 131 39.7
CARHR020100 Cardamine hirsuta HOM05D004108 ORTHO05D004849 3.9e-17 92.0 131 38.9
RcHm_v2.0_Chr6g0301271 Rosa chinensis HOM05D004108 ORTHO05D004849 1.5e-16 90.1 145 42.1
AT1G19530 Arabidopsis thaliana HOM05D004108 ORTHO05D004849 3.3e-16 89.0 132 40.9
SEGI_02312 Sequoiadendron giganteum HOM05D004108 ORTHO05D004849 4.3e-16 88.6 151 39.7
DCAR_020978 Daucus carota HOM05D004108 ORTHO05D004849 5.7e-16 88.2 115 43.5
Rhsim06G0031500 Rhododendron simsii HOM05D004108 ORTHO05D004849 9.7e-16 87.4 115 42.6
FvH4_2g39630 Fragaria vesca HOM05D004108 ORTHO05D004849 1.3e-15 87.0 149 39.6
Aa31LG7G4180 Aethionema arabicum HOM05D004108 ORTHO05D004849 1.6e-15 86.7 131 35.9
SEGI_15325 Sequoiadendron giganteum HOM05D004108 ORTHO05D004849 1.6e-15 86.7 151 39.7
AL1G32280 Arabidopsis lyrata HOM05D004108 ORTHO05D004849 2.2e-15 86.3 134 38.1
Aqoxy3G01077 Aquilegia oxysepala HOM05D004108 ORTHO05D004849 3.7e-15 85.5 131 37.4
ClCG05G018840 Citrullus lanatus HOM05D004108 ORTHO05D004849 8.2e-15 84.3 100 42.0
Nn2g14293 Nelumbo nucifera HOM05D004108 ORTHO05D004849 1.8e-14 83.2 123 40.7
Aqoxy3G01079 Aquilegia oxysepala HOM05D004108 ORTHO05D004849 3.1e-14 82.4 142 39.4
Os03g0826800 Oryza sativa ssp. japonica HOM05D004108 ORTHO05D004849 9.0e-14 80.9 140 35.0
AagrBONN_evm.TU.Sc2ySwM_344.1816 Anthoceros agrestis HOM05D004108 ORTHO05D004849 1.5e-13 80.1 141 41.1
Mapoly0212s0009 Marchantia polymorpha HOM05D004108 ORTHO05D004849 1.5e-13 80.1 139 37.4
Nitab4.5_0001759g0080 Nicotiana tabacum HOM05D004108 ORTHO05D004849 2.0e-13 79.7 108 45.4
Peaxi162Scf00303g00058 Petunia axillaris HOM05D004108 ORTHO05D004849 2.0e-13 79.7 116 45.7
Mapoly0152s0035 Marchantia polymorpha HOM05D004108 ORTHO05D004849 2.6e-13 79.3 137 36.5
Actinidia38001 Actinidia chinensis HOM05D004108 ORTHO05D004849 4.5e-13 78.6 103 44.7
Mapoly0085s0006 Marchantia polymorpha HOM05D004108 ORTHO05D004849 4.5e-13 78.6 134 37.3
Mapoly0203s0009 Marchantia polymorpha HOM05D004108 ORTHO05D004849 4.5e-13 78.6 130 35.4
Mapoly0212s0008 Marchantia polymorpha HOM05D004108 ORTHO05D004849 4.5e-13 78.6 131 34.4
CDE11G1036 Ceratophyllum demersum HOM05D004108 ORTHO05D004849 5.9e-13 78.2 131 37.4
Mapoly0085s0007 Marchantia polymorpha HOM05D004108 ORTHO05D004849 1.0e-12 77.4 137 31.4
SEGI_30411 Sequoiadendron giganteum HOM05D004108 ORTHO05D004849 1.0e-12 77.4 143 38.5
HanXRQChr16g0501561 Helianthus annuus HOM05D004108 ORTHO05D004849 1.3e-12 77.0 130 38.5
Hma1.2p1_0203F.1_g086240 Hydrangea macrophylla HOM05D004108 ORTHO05D004849 1.4e-11 73.6 110 43.6
SMO348G0043 Selaginella moellendorffii HOM05D004108 ORTHO05D004849 1.4e-11 73.6 153 37.3
CSS0033768 Camellia sinensis var. sinensis HOM05D004108 ORTHO05D004849 1.9e-11 73.2 52 67.3
Peaxi162Scf00020g01711 Petunia axillaris HOM05D004108 ORTHO05D004849 1.9e-11 73.2 93 45.2
Mapoly0212s0007 Marchantia polymorpha HOM05D004108 ORTHO05D004849 2.5e-11 72.8 136 32.4
Sc02g0005700 Simmondsia chinensis HOM05D004108 ORTHO05D004849 7.2e-11 71.2 79 46.8
CDE05G3574 Ceratophyllum demersum HOM05D004108 ORTHO05D004849 1.2e-10 70.5 143 34.3
Pp3c16_7660 Physcomitrium patens HOM05D004108 ORTHO05D004849 1.2e-10 70.5 132 34.1
Mapoly0037s0069 Marchantia polymorpha HOM05D004108 ORTHO05D004849 6.1e-10 68.2 140 29.3
Mapoly0087s0044 Marchantia polymorpha HOM05D004108 ORTHO05D004849 1.4e-09 67.0 139 29.5
Actinidia30825 Actinidia chinensis HOM05D004108 ORTHO05D004849 2.3e-09 66.2 90 42.2
Pp3c20_22930 Physcomitrium patens HOM05D004108 ORTHO05D004849 3.0e-09 65.9 135 31.1
Mapoly0087s0045 Marchantia polymorpha HOM05D004108 ORTHO05D004849 8.8e-09 64.3 135 28.9
AUR62014477 Chenopodium quinoa HOM05D004108 ORTHO05D004849 2.5e-08 62.8 50 56.0
PGSC0003DMG400005376 Solanum tuberosum HOM05D004108 ORTHO05D004849 4.3e-08 62.0 115 35.7
unitig_747.g21673 Utricularia gibba HOM05D004108 ORTHO05D004849 7.4e-08 61.2 134 32.1
Peaxi162Scf00328g00118 Petunia axillaris HOM05D003374 ORTHO05D009470 2.8e-07 59.3 110 30.9
Actinidia29817 Actinidia chinensis HOM05D004108 ORTHO05D004849 3.7e-07 58.9 39 64.1
FvH4_1g11080 Fragaria vesca HOM05D003374 ORTHO05D009470 3.1e-06 55.8 126 31.7
Nitab4.5_0006892g0010 Nicotiana tabacum HOM05D003374 ORTHO05D009470 4.1e-06 55.5 113 32.7
MBI09_g46000_MAGBIO Magnolia biondii HOM05D003374 ORTHO05D009470 5.3e-06 55.1 109 33.9
Nitab4.5_0004768g0030 Nicotiana tabacum HOM05D004108 ORTHO05D004849 5.3e-06 55.1 101 41.6
FAN23G1041 Fragaria x ananassa HOM05D003374 ORTHO05D009470 6.9e-06 54.7 126 31.7
FAN26G1101 Fragaria x ananassa HOM05D003374 ORTHO05D009470 6.9e-06 54.7 126 31.7
FAN28G2426 Fragaria x ananassa HOM05D003374 ORTHO05D009470 6.9e-06 54.7 126 31.7


User provided reference genes

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