Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.04G023500 Glycine max HOM05D007731 ORTHO05D008483 5.7e-113 411.0 215 100.0
Glyma.06G023400 Glycine max HOM05D007731 ORTHO05D008483 6.1e-67 258.1 214 70.6
VMungo1309G0548 Vigna mungo HOM05D007731 ORTHO05D008483 1.4e-63 246.9 226 68.6
Phvul.009G009600 Phaseolus vulgaris HOM05D007731 ORTHO05D008483 5.4e-63 245.0 227 65.6
Lj1g0026139 Lotus japonicus HOM05D007731 ORTHO05D008483 4.7e-43 178.7 252 52.8
Lalb_Chr23g0266081 Lupinus albus HOM05D007731 ORTHO05D008483 2.6e-41 172.9 217 52.1
TPR.G34549 Trifolium pratense HOM05D007731 ORTHO05D008483 5.8e-41 171.8 230 51.7
Medtr3g113660 Medicago truncatula HOM05D007731 ORTHO05D008483 2.2e-40 169.9 218 50.9
Psat0s2878g0040 Pisum sativum HOM05D007731 ORTHO05D008483 1.3e-37 160.6 224 50.0
Ca_15482_v3 Cicer arietinum L. HOM05D007731 ORTHO05D008483 1.9e-31 140.2 109 71.6
QL02p012129 Quercus lobata HOM05D007731 ORTHO05D008483 4.1e-31 139.0 242 44.6
arahy.Tifrunner.gnm1.ann1.WY2XWP Arachis hypogaea HOM05D007731 ORTHO05D008483 1.8e-26 123.6 219 46.6
Prupe.1G363100 Prunus persica HOM05D007731 ORTHO05D008483 3.4e-25 119.4 222 41.0
Thecc.08G047100 Theobroma cacao HOM05D007731 ORTHO05D008483 3.4e-25 119.4 249 42.2
CiPaw.07G147300 Carya illinoinensis HOM05D007731 ORTHO05D008483 9.9e-25 117.9 253 39.9
arahy.Tifrunner.gnm1.ann1.3IU0NQ Arachis hypogaea HOM05D007731 ORTHO05D008483 2.2e-24 116.7 226 42.9
Gohir.A05G185300 Gossypium hirsutum HOM05D007731 ORTHO05D008483 6.4e-24 115.2 262 38.5
Duzib093G0569 Durio zibethinus HOM05D007731 ORTHO05D008483 8.4e-24 114.8 246 39.0
Hma1.2p1_0733F.1_g210180 Hydrangea macrophylla HOM05D007731 ORTHO05D008483 8.4e-24 114.8 232 39.7
Manes.05G145300 Manihot esculenta HOM05D007731 ORTHO05D008483 8.4e-24 114.8 253 38.3
TAR628G0423 Trochodendron aralioides HOM05D007731 ORTHO05D008483 1.9e-23 113.6 248 41.1
CSS0046256 Camellia sinensis var. sinensis HOM05D007731 ORTHO05D008483 2.4e-23 113.2 239 39.7
Cpa.g.sc26.305 Carica papaya HOM05D007731 ORTHO05D008483 2.4e-23 113.2 239 38.9
CSS0005102 Camellia sinensis var. sinensis HOM05D007731 ORTHO05D008483 5.4e-23 112.1 239 39.7
TAR376G0482 Trochodendron aralioides HOM05D007731 ORTHO05D008483 9.3e-23 111.3 238 41.2
Sabra02G0016000 Salix brachista HOM05D007731 ORTHO05D008483 1.2e-22 110.9 258 37.6
ClCG08G014190 Citrullus lanatus HOM05D007731 ORTHO05D008483 2.1e-22 110.2 239 38.9
Sed0013309 Sechium edule HOM05D007731 ORTHO05D008483 2.7e-22 109.8 191 41.9
Cfa013976 Carpinus fangiana HOM05D007731 ORTHO05D008483 4.6e-22 109.0 243 37.0
Potri.002G019700 Populus trichocarpa HOM05D007731 ORTHO05D008483 6.0e-22 108.6 257 38.1
Gorai.009G193400 Gossypium raimondii HOM05D007731 ORTHO05D008483 1.7e-21 107.1 259 36.7
Haze_22661 Corylus avellana HOM05D007731 ORTHO05D008483 3.0e-21 106.3 244 36.1
CsaV3_2G024250 Cucumis sativus L. HOM05D007731 ORTHO05D008483 2.5e-20 103.2 239 36.8
Gohir.D05G188100 Gossypium hirsutum HOM05D007731 ORTHO05D008483 3.3e-20 102.8 259 35.5
TWI12G0892 Tripterygium wilfordii HOM05D007731 ORTHO05D008483 4.3e-20 102.4 172 42.4
CANSAT25G3722 Cannabis sativa HOM05D007731 ORTHO05D008483 5.6e-20 102.1 231 39.8
Sabra05G0187200 Salix brachista HOM05D007731 ORTHO05D008483 9.6e-20 101.3 273 37.0
FAN27G0472 Fragaria x ananassa HOM05D007731 ORTHO05D008483 1.3e-19 100.9 228 38.6
Dinv39536 Davidia involucrata HOM05D007731 ORTHO05D008483 1.6e-19 100.5 158 48.1
RcHm_v2.0_Chr6g0303181 Rosa chinensis HOM05D007731 ORTHO05D008483 1.6e-19 100.5 243 38.3
CSS0037397 Camellia sinensis var. sinensis HOM05D007731 ORTHO05D008483 2.1e-19 100.1 220 39.1
Lalb_Chr19g0131461 Lupinus albus HOM05D007731 ORTHO05D008483 2.8e-19 99.8 214 37.9
Manes.18G011966 Manihot esculenta HOM05D007731 ORTHO05D008483 3.6e-19 99.4 254 37.4
Potri.005G241800 Populus trichocarpa HOM05D007731 ORTHO05D008483 3.6e-19 99.4 261 37.9
Gohir.A01G110400 Gossypium hirsutum HOM05D007731 ORTHO05D008483 8.1e-19 98.2 241 37.3
COL.COLO4_26124 Corchorus olitorius HOM05D007731 ORTHO05D008483 1.4e-18 97.4 260 33.1
Actinidia15437 Actinidia chinensis HOM05D007731 ORTHO05D008483 1.8e-18 97.1 204 40.7
Ciclev10002425m.g Citrus clementina HOM05D007731 ORTHO05D008483 1.8e-18 97.1 238 38.7
TWI56G0526 Tripterygium wilfordii HOM05D007731 ORTHO05D008483 1.8e-18 97.1 185 40.0
FAN15G0282 Fragaria x ananassa HOM05D007731 ORTHO05D008483 4.0e-18 95.9 235 37.4
Phvul.001G005800 Phaseolus vulgaris HOM05D032462 ORTHO05D035917 4.0e-18 95.9 198 38.9
CiPaw.08G067400 Carya illinoinensis HOM05D007731 ORTHO05D008483 6.9e-18 95.1 121 51.2
FAN20G0947 Fragaria x ananassa HOM05D007731 ORTHO05D008483 9.0e-18 94.7 236 37.3
Actinidia16998 Actinidia chinensis HOM05D007731 ORTHO05D008483 1.5e-17 94.0 222 36.9
ECA233G0921 Erigeron canadensis HOM05D007731 ORTHO05D008483 2.0e-17 93.6 167 39.5
MSTRG.25262 Avicennia marina HOM05D007731 ORTHO05D008483 5.8e-17 92.0 258 36.0
Lj4P799T27 Lonicera japonica HOM05D007731 ORTHO05D008483 7.6e-17 91.7 289 34.6
Lsat_1_v5_gn_8_30081 Lactuca sativa HOM05D007731 ORTHO05D008483 2.9e-16 89.7 218 37.2
FvH4_2g38210 Fragaria vesca HOM05D007731 ORTHO05D008483 3.8e-16 89.4 235 37.0
Cc00_g29330 Coffea canephora HOM05D007731 ORTHO05D008483 4.9e-16 89.0 261 34.1
Nn5g30769 Nelumbo nucifera HOM05D007731 ORTHO05D008483 8.4e-16 88.2 140 43.6
CSS0031900 Camellia sinensis var. sinensis HOM05D007731 ORTHO05D008483 1.9e-15 87.0 215 35.3
VMungo0647G0644 Vigna mungo HOM05D032462 ORTHO05D035917 3.2e-15 86.3 200 38.0
Gohir.D01G097000 Gossypium hirsutum HOM05D007731 ORTHO05D008483 9.3e-15 84.7 242 35.5
Gorai.002G122700 Gossypium raimondii HOM05D007731 ORTHO05D008483 9.3e-15 84.7 242 35.5
PGR031G1853 Punica granatum HOM05D007731 ORTHO05D008483 4.6e-14 82.4 249 34.9
Rhsim06G0016400 Rhododendron simsii HOM05D007731 ORTHO05D008483 4.6e-14 82.4 202 36.1
Gohir.A02G083100 Gossypium hirsutum HOM05D007731 ORTHO05D008483 7.9e-14 81.6 228 32.9
Eucgr.H00961 Eucalyptus grandis HOM05D007731 ORTHO05D008483 1.8e-13 80.5 211 36.0
Rhsim06G0019700 Rhododendron simsii HOM05D007731 ORTHO05D008483 2.3e-13 80.1 202 36.1
Nn6g32002 Nelumbo nucifera HOM05D007731 ORTHO05D008483 5.1e-13 79.0 222 34.2
Aqoxy6G02285 Aquilegia oxysepala HOM05D007731 ORTHO05D008483 6.7e-13 78.6 246 30.1
Gohir.D02G098500 Gossypium hirsutum HOM05D007731 ORTHO05D008483 1.9e-12 77.0 220 32.7
Gorai.005G112400 Gossypium raimondii HOM05D007731 ORTHO05D008483 1.9e-12 77.0 177 37.3
PSO541G3821 Papaver somniferum HOM05D007731 ORTHO05D008483 2.5e-12 76.6 266 29.3
THA.LOC104811421 Tarenaya hassleriana HOM05D009961 ORTHO05D008483 3.3e-12 76.3 227 35.2
Sopen04g035340 Solanum pennellii HOM05D007731 ORTHO05D008483 4.3e-12 75.9 122 45.1
Migut.C00858 Erythranthe guttata HOM05D007731 ORTHO05D008483 9.6e-12 74.7 142 40.1
PGSC0003DMG400009876 Solanum tuberosum HOM05D007731 ORTHO05D008483 3.6e-11 72.8 220 34.5
A06p16220 Brassica napus HOM05D009961 ORTHO05D008483 1.1e-10 71.2 145 39.3
BolC7t42871H Brassica oleracea HOM05D009961 ORTHO05D008483 1.1e-10 71.2 147 35.4
DCAR_013881 Daucus carota HOM05D007731 ORTHO05D008483 1.4e-10 70.9 141 40.4
SGA_v2.0_scaffold92G28205 Striga asiatica HOM05D007731 ORTHO05D008483 2.4e-10 70.1 168 36.9
Thhalv10008606m.g Eutrema salsugineum HOM05D009961 ORTHO05D008483 3.1e-10 69.7 211 34.6
BcaB07g32022 Brassica carinata HOM05D009961 ORTHO05D008483 5.3e-10 68.9 211 36.0
A07p16020 Brassica napus HOM05D009961 ORTHO05D008483 5.3e-10 68.9 145 37.2
BraA07t29330Z Brassica rapa HOM05D009961 ORTHO05D008483 5.3e-10 68.9 145 37.2
Dinv31866 Davidia involucrata HOM05D000068 ORTHO05D000084 6.9e-10 68.6 187 35.8
Sc15g0004830 Simmondsia chinensis HOM05D007731 ORTHO05D008483 6.9e-10 68.6 164 36.6
BcaC05g25901 Brassica carinata HOM05D009961 ORTHO05D008483 2.0e-09 67.0 206 37.9
C05p18560 Brassica napus HOM05D009961 ORTHO05D008483 2.0e-09 67.0 206 37.9
BolC5t30567H Brassica oleracea HOM05D009961 ORTHO05D008483 2.0e-09 67.0 206 37.9
Carub.0001s1960 Capsella rubella HOM05D009961 ORTHO05D008483 5.8e-09 65.5 152 38.8
MBI18_g10965_MAGBIO Magnolia biondii HOM05D001921 ORTHO05D001784 5.8e-09 65.5 136 35.3
AT1G20070 Arabidopsis thaliana HOM05D009961 ORTHO05D008483 7.6e-09 65.1 205 32.2
CsaV3_3G045970 Cucumis sativus L. HOM05D007731 ORTHO05D008483 9.9e-09 64.7 177 34.5
BraA06t24726Z Brassica rapa HOM05D009961 ORTHO05D008483 8.4e-08 61.6 105 40.0
BcaC07g39017 Brassica carinata HOM05D009961 ORTHO05D008483 1.1e-07 61.2 71 47.9
C08p19900 Brassica napus HOM05D009961 ORTHO05D008483 1.1e-07 61.2 71 47.9
BolC8t49628H Brassica oleracea HOM05D009961 ORTHO05D008483 1.1e-07 61.2 71 47.9
MELO3C003742.2 Cucumis melo HOM05D007731 ORTHO05D008483 1.4e-07 60.8 195 33.8
Sp1g17840 Schrenkiella parvula HOM05D009961 ORTHO05D008483 1.4e-07 60.8 205 36.1
VMungo0540G1436 Vigna mungo HOM05D001921 ORTHO05D001784 1.4e-07 60.8 102 41.2
AL1G32880 Arabidopsis lyrata HOM05D009961 ORTHO05D008483 1.9e-07 60.5 175 33.1
CARHR020550 Cardamine hirsuta HOM05D009961 ORTHO05D008483 2.4e-07 60.1 209 31.6
Phvul.006G158900 Phaseolus vulgaris HOM05D001921 ORTHO05D001784 3.2e-07 59.7 95 44.2
ClCG05G015580 Citrullus lanatus HOM05D007731 ORTHO05D008483 4.2e-07 59.3 101 46.5
Duzib151G0850 Durio zibethinus HOM05D001921 ORTHO05D001784 5.5e-07 58.9 85 41.2
Glyma.14G220100 Glycine max HOM05D032462 ORTHO05D035917 7.1e-07 58.5 203 32.5
Cpa.g.sc16.79 Carica papaya HOM05D001921 ORTHO05D001784 9.3e-07 58.2 101 36.6
Potri.008G198000 Populus trichocarpa HOM05D001921 ORTHO05D001784 9.3e-07 58.2 105 38.1
Potri.010G027500 Populus trichocarpa HOM05D001921 ORTHO05D001784 1.2e-06 57.8 85 40.0
BcaB03g14337 Brassica carinata HOM05D009961 ORTHO05D008483 1.6e-06 57.4 136 34.6
DCAR_023282 Daucus carota HOM05D001921 ORTHO05D001784 1.6e-06 57.4 96 42.7
Gohir.A10G105100 Gossypium hirsutum HOM05D001921 ORTHO05D001784 1.6e-06 57.4 85 40.0
Gohir.D10G163601 Gossypium hirsutum HOM05D001921 ORTHO05D001784 1.6e-06 57.4 85 40.0
Gorai.011G182400 Gossypium raimondii HOM05D001921 ORTHO05D001784 1.6e-06 57.4 85 40.0
Sabra08G0162400 Salix brachista HOM05D001921 ORTHO05D001784 1.6e-06 57.4 85 41.2
arahy.Tifrunner.gnm1.ann1.288BMH Arachis hypogaea HOM05D001921 ORTHO05D001784 2.1e-06 57.0 94 39.4
arahy.Tifrunner.gnm1.ann1.XA6I97 Arachis hypogaea HOM05D001921 ORTHO05D001784 2.1e-06 57.0 94 39.4
Hma1.2p1_0511F.1_g169240 Hydrangea macrophylla HOM05D001921 ORTHO05D001784 2.1e-06 57.0 97 39.2
ATR0580G129 Amborella trichopoda HOM05D001921 ORTHO05D001784 2.7e-06 56.6 110 36.4
Sabra10G0013000 Salix brachista HOM05D001921 ORTHO05D001784 2.7e-06 56.6 83 41.0
C07p23380 Brassica napus HOM05D009961 ORTHO05D008483 3.5e-06 56.2 154 33.1
CiPaw.02G088800 Carya illinoinensis HOM05D001921 ORTHO05D001784 3.5e-06 56.2 86 39.5
unitig_749.g13899 Utricularia gibba HOM05D007731 ORTHO05D008483 4.6e-06 55.8 53 56.6
RcHm_v2.0_Chr4g0420321 Rosa chinensis HOM05D001921 ORTHO05D001784 6.0e-06 55.5 76 43.4
FAN17G2860 Fragaria x ananassa HOM05D001921 ORTHO05D001784 7.9e-06 55.1 76 43.4


User provided reference genes

Program Settings