Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.04G019600 Glycine max HOM05D005792 ORTHO05D007171 2.2e-182 642.1 315 100.0
Glyma.06G019900 Glycine max HOM05D005792 ORTHO05D007171 1.8e-168 595.9 315 93.3
VMungo1309G0997 Vigna mungo HOM05D005792 ORTHO05D007171 6.5e-158 560.8 315 88.6
Ca_15448_v3 Cicer arietinum L. HOM05D005792 ORTHO05D007171 1.7e-150 536.2 315 84.1
Lj1g0011663 Lotus japonicus HOM05D005792 ORTHO05D007171 3.8e-150 535.0 315 82.9
Psat5g010960 Pisum sativum HOM05D005792 ORTHO05D007171 3.2e-149 531.9 315 83.5
Medtr3g115040 Medicago truncatula HOM05D005792 ORTHO05D007171 4.6e-148 528.1 315 83.2
arahy.Tifrunner.gnm1.ann1.NZM2IS Arachis hypogaea HOM05D005792 ORTHO05D007171 1.5e-143 513.1 346 75.4
Lalb_Chr23g0265871 Lupinus albus HOM05D005792 ORTHO05D007171 1.5e-143 513.1 315 78.1
CiPaw.08G070700 Carya illinoinensis HOM05D005792 ORTHO05D007171 9.7e-138 493.8 315 75.6
CiPaw.08G070500 Carya illinoinensis HOM05D005792 ORTHO05D007171 1.2e-135 486.9 315 74.6
QL02p013536 Quercus lobata HOM05D005792 ORTHO05D007171 4.5e-135 485.0 321 74.5
Atru.chr13.181 Acer truncatum HOM05D005792 ORTHO05D007171 2.2e-134 482.6 316 75.0
Eucgr.F01710 Eucalyptus grandis HOM05D005792 ORTHO05D007171 2.2e-134 482.6 313 74.1
Manes.18G007700 Manihot esculenta HOM05D005792 ORTHO05D007171 6.5e-134 481.1 315 74.3
Prupe.1G357300 Prunus persica HOM05D005792 ORTHO05D007171 7.2e-133 477.6 314 74.2
TWI36G1625 Tripterygium wilfordii HOM05D005792 ORTHO05D007171 1.6e-132 476.5 315 73.0
Potri.005G247600 Populus trichocarpa HOM05D005792 ORTHO05D007171 4.7e-132 474.9 316 72.8
Thecc.08G054700 Theobroma cacao HOM05D005792 ORTHO05D007171 6.1e-132 474.6 315 74.6
FvH4_2g37800 Fragaria vesca HOM05D005792 ORTHO05D007171 3.3e-130 468.8 310 73.5
CsaV3_2G024540 Cucumis sativus L. HOM05D005792 ORTHO05D007171 4.4e-130 468.4 313 72.2
CANSAT51G0003 Cannabis sativa HOM05D005792 ORTHO05D007171 5.7e-130 468.0 312 74.4
Duzib093G0813 Durio zibethinus HOM05D005792 ORTHO05D007171 1.7e-129 466.5 315 73.0
RcHm_v2.0_Chr6g0303911 Rosa chinensis HOM05D005792 ORTHO05D007171 2.4e-128 462.6 312 72.4
THA.LOC104813765 Tarenaya hassleriana HOM05D005792 ORTHO05D007171 2.4e-128 462.6 311 71.7
Sed0026749 Sechium edule HOM05D005792 ORTHO05D007171 9.1e-128 460.7 311 71.4
MD08G1005200 Malus domestica HOM05D005792 ORTHO05D007171 1.6e-127 459.9 312 72.4
MELO3C011330.2 Cucumis melo HOM05D005792 ORTHO05D007171 2.0e-127 459.5 325 70.2
Atru.chr13.183 Acer truncatum HOM05D005792 ORTHO05D007171 5.9e-127 458.0 313 70.6
Gorai.009G268300 Gossypium raimondii HOM05D005792 ORTHO05D007171 5.9e-127 458.0 315 71.1
Manes.05G141100 Manihot esculenta HOM05D005792 ORTHO05D007171 7.7e-127 457.6 313 71.9
Dinv39569 Davidia involucrata HOM05D005792 ORTHO05D007171 8.5e-126 454.1 315 70.2
Gohir.D05G256800 Gossypium hirsutum HOM05D005792 ORTHO05D007171 1.1e-125 453.8 315 70.5
AT1G76150 Arabidopsis thaliana HOM05D005792 ORTHO05D007171 4.2e-125 451.8 313 69.3
BcaC08g47286 Brassica carinata HOM05D005792 ORTHO05D007171 4.2e-125 451.8 314 69.4
AL2G36210 Arabidopsis lyrata HOM05D005792 ORTHO05D007171 5.5e-125 451.4 311 69.5
Thhalv10018917m.g Eutrema salsugineum HOM05D005792 ORTHO05D007171 1.6e-124 449.9 311 69.5
Sed0027939 Sechium edule HOM05D005792 ORTHO05D007171 1.0e-123 447.2 311 68.8
PGR083G0297 Punica granatum HOM05D005792 ORTHO05D007171 1.4e-123 446.8 315 68.9
GSVIVG01008709001 Vitis vinifera HOM05D005792 ORTHO05D007171 1.4e-123 446.8 315 69.5
Sp5g31280 Schrenkiella parvula HOM05D005792 ORTHO05D007171 2.3e-123 446.0 314 69.7
Carub.0002s2304 Capsella rubella HOM05D005792 ORTHO05D007171 5.2e-123 444.9 313 69.3
Nitab4.5_0000498g0200 Nicotiana tabacum HOM05D005792 ORTHO05D007171 6.8e-123 444.5 314 69.1
Ciclev10001939m.g Citrus clementina HOM05D005792 ORTHO05D007171 1.5e-122 443.4 316 69.9
A07p41720 Brassica napus HOM05D005792 ORTHO05D007171 7.5e-122 441.0 313 69.6
Nitab4.5_0002353g0010 Nicotiana tabacum HOM05D005792 ORTHO05D007171 9.8e-122 440.7 312 68.6
Aqoxy6G01867 Aquilegia oxysepala HOM05D005792 ORTHO05D007171 2.2e-121 439.5 313 65.8
CARHR069700 Cardamine hirsuta HOM05D005792 ORTHO05D007171 2.8e-121 439.1 314 68.2
Migut.C00916 Erythranthe guttata HOM05D005792 ORTHO05D007171 3.7e-121 438.7 315 67.9
vmacro21840 Vaccinium macrocarpon HOM05D005792 ORTHO05D007171 1.1e-120 437.2 346 63.0
AUR62013837 Chenopodium quinoa HOM05D005792 ORTHO05D007171 1.4e-120 436.8 308 66.6
Duzib116G0262 Durio zibethinus HOM05D005792 ORTHO05D007171 1.8e-120 436.4 286 73.4
Sc26g0004560 Simmondsia chinensis HOM05D005792 ORTHO05D007171 1.8e-120 436.4 308 69.2
CSS0018708 Camellia sinensis var. sinensis HOM05D005792 ORTHO05D007171 2.4e-120 436.0 313 67.4
C06p50100 Brassica napus HOM05D005792 ORTHO05D007171 3.1e-120 435.6 314 68.2
CSS0011850 Camellia sinensis var. sinensis HOM05D005792 ORTHO05D007171 5.4e-120 434.9 313 67.1
CAN.G401.3 Capsicum annuum HOM05D005792 ORTHO05D007171 9.1e-120 434.1 311 69.1
Hund05134 Selenicereus undatus HOM05D005792 ORTHO05D007171 1.2e-119 433.7 314 66.6
BraA07t31701Z Brassica rapa HOM05D005792 ORTHO05D007171 1.6e-119 433.3 313 68.7
Cfa014030 Carpinus fangiana HOM05D000201 ORTHO05D004673 3.5e-119 432.2 287 74.2
unitig_747.g21523 Utricularia gibba HOM05D005792 ORTHO05D007171 1.0e-118 430.6 313 66.8
Nn5g30890 Nelumbo nucifera HOM05D005792 ORTHO05D007171 1.3e-118 430.3 318 67.0
CSS0016825 Camellia sinensis var. sinensis HOM05D005792 ORTHO05D007171 1.7e-118 429.9 318 66.4
Peaxi162Scf00064g00910 Petunia axillaris HOM05D005792 ORTHO05D007171 2.3e-118 429.5 311 68.8
HanXRQChr14g0429001 Helianthus annuus HOM05D005792 ORTHO05D007171 2.9e-118 429.1 313 65.8
EL10Ac1g02028 Beta vulgaris HOM05D005792 ORTHO05D007171 5.0e-118 428.3 308 67.2
Cc10_g00990 Coffea canephora HOM05D005792 ORTHO05D007171 6.5e-118 427.9 321 64.8
PSO541G2987 Papaver somniferum HOM05D005792 ORTHO05D007171 5.5e-117 424.9 308 66.2
Hma1.2p1_1260F.1_g270990 Hydrangea macrophylla HOM05D005792 ORTHO05D007171 9.5e-117 424.1 315 67.0
Haze_22736 Corylus avellana HOM05D005792 ORTHO05D007171 1.6e-116 423.3 352 62.5
BcaNung05119 Brassica carinata HOM05D005792 ORTHO05D007171 2.8e-116 422.5 314 66.6
Solyc12g094450.3 Solanum lycopersicum HOM05D005792 ORTHO05D007171 4.7e-116 421.8 311 66.6
ECA238G1749 Erigeron canadensis HOM05D005792 ORTHO05D007171 6.1e-116 421.4 311 65.9
Sopen12g031340 Solanum pennellii HOM05D005792 ORTHO05D007171 2.3e-115 419.5 311 66.2
Lsat_1_v5_gn_2_5940 Lactuca sativa HOM05D005792 ORTHO05D007171 3.0e-115 419.1 316 64.9
Aa31LG4G6270 Aethionema arabicum HOM05D005792 ORTHO05D007171 6.8e-115 417.9 313 65.8
Rhsim06G0009800 Rhododendron simsii HOM05D005792 ORTHO05D007171 6.8e-115 417.9 313 65.5
Atru.chr1.2256 Acer truncatum HOM05D005792 ORTHO05D007171 8.8e-115 417.5 315 64.4
Lj4C15T2 Lonicera japonica HOM05D005792 ORTHO05D007171 2.6e-114 416.0 315 64.8
SalBow7G0964 Salvia bowleyana HOM05D005792 ORTHO05D007171 2.6e-114 416.0 302 66.2
Gohir.A05G255200 Gossypium hirsutum HOM05D005792 ORTHO05D007171 1.3e-113 413.7 320 65.3
PGSC0003DMG400029326 Solanum tuberosum HOM05D005792 ORTHO05D007171 1.1e-112 410.6 340 61.5
ClCG08G013930 Citrullus lanatus HOM05D005792 ORTHO05D007171 2.4e-112 409.5 345 61.2
Phvul.009G020900 Phaseolus vulgaris HOM05D005792 ORTHO05D007171 5.4e-112 408.3 224 87.9
BolC6t40050H Brassica oleracea HOM05D005792 ORTHO05D007171 2.0e-111 406.4 361 58.7
FAN27G1567 Fragaria x ananassa HOM05D000201 ORTHO05D004673 7.8e-111 404.4 288 69.8
Os09g0544900 Oryza sativa ssp. japonica HOM05D005792 ORTHO05D007171 2.9e-110 402.5 314 61.8
FAN15G3656 Fragaria x ananassa HOM05D000201 ORTHO05D004673 8.6e-110 401.0 288 68.4
Actinidia15473 Actinidia chinensis HOM05D005792 ORTHO05D007171 2.1e-108 396.4 337 60.8
MBI08_g05391_MAGBIO Magnolia biondii HOM05D005792 ORTHO05D007171 8.0e-108 394.4 289 66.8
SGA_v2.0_scaffold351G49656 Striga asiatica HOM05D005792 ORTHO05D007171 5.7e-106 388.3 322 61.8
TAR625G0413 Trochodendron aralioides HOM05D005792 ORTHO05D007171 4.9e-105 385.2 291 66.7
DCAR_016749 Daucus carota HOM05D005792 ORTHO05D007171 5.9e-103 378.3 375 53.1
Pp3c4_24330 Physcomitrium patens HOM05D005792 ORTHO05D007171 7.0e-96 354.8 326 56.4
COL.COLO4_26053 Corchorus olitorius HOM05D005792 ORTHO05D007171 9.2e-96 354.4 320 61.2
BcaC08g47109 Brassica carinata HOM05D005792 ORTHO05D007171 8.6e-94 347.8 309 58.6
PSO675G2870 Papaver somniferum HOM05D005792 ORTHO05D007171 1.9e-93 346.7 308 57.1
DCAR_013899 Daucus carota HOM05D005792 ORTHO05D007171 5.6e-93 345.1 315 56.2
Ah.11g040640 Amaranthus hybridus HOM05D005792 ORTHO05D007171 4.0e-91 339.0 308 55.5
Nitab4.5_0000588g0300 Nicotiana tabacum HOM05D005792 ORTHO05D007171 2.0e-90 336.7 314 56.1
arahy.Tifrunner.gnm1.ann1.CIDL5D Arachis hypogaea HOM05D005792 ORTHO05D007171 2.2e-89 333.2 201 80.6
Haze_22722 Corylus avellana HOM05D005792 ORTHO05D007171 4.1e-88 328.9 288 60.8
SHI08027 Sapria himalayana HOM05D005792 ORTHO05D007171 4.1e-88 328.9 287 57.5
SMO174G0111 Selaginella moellendorffii HOM05D005792 ORTHO05D007171 2.3e-86 323.2 308 53.9
Gohir.D02G118150 Gossypium hirsutum HOM05D005792 ORTHO05D007171 1.5e-85 320.5 229 67.2
AUR62036768 Chenopodium quinoa HOM05D005792 ORTHO05D007171 8.1e-84 314.7 289 56.1
Zm00001eb104070 Zea mays HOM05D005792 ORTHO05D007171 8.9e-83 311.2 240 62.1
Mapoly0135s0031 Marchantia polymorpha HOM05D005792 ORTHO05D007171 3.5e-79 299.3 321 49.5
Oeu021471.1 Olea europaea HOM05D005792 ORTHO05D007171 6.0e-71 271.9 198 66.7
SEGI_22358 Sequoiadendron giganteum HOM05D005792 ORTHO05D007171 6.6e-70 268.5 206 64.1
Zm00001eb321160 Zea mays HOM05D005792 ORTHO05D007171 1.5e-69 267.3 213 60.1
ATR0661G150 Amborella trichopoda HOM05D005792 ORTHO05D007171 1.9e-69 266.9 210 65.2
MSTRG.25290 Avicennia marina HOM05D005792 ORTHO05D007171 6.2e-68 261.9 199 63.8
TAR625G0324 Trochodendron aralioides HOM05D005792 ORTHO05D007171 5.8e-66 255.4 174 70.7
Sabra02G0010800 Salix brachista HOM05D005792 ORTHO05D007171 9.9e-66 254.6 231 56.3
TPR.G753 Trifolium pratense HOM05D005792 ORTHO05D007171 1.6e-63 247.3 137 86.9
TPR.G38109 Trifolium pratense HOM05D005792 ORTHO05D007171 8.1e-60 235.0 315 46.3
AagrBONN_evm.TU.Sc2ySwM_117.3246 Anthoceros agrestis HOM05D005792 ORTHO05D007171 2.1e-55 220.3 209 54.1
CBR_g50912 Chara braunii HOM05D005792 ORTHO05D007171 5.6e-53 212.2 404 36.6
Actinidia17028 Actinidia chinensis HOM05D005792 ORTHO05D007171 1.1e-48 198.0 169 60.9
CDE05G1591 Ceratophyllum demersum HOM05D005792 ORTHO05D007171 2.1e-47 193.7 152 57.9
CSS0030340 Camellia sinensis var. sinensis HOM05D005792 ORTHO05D007171 1.0e-41 174.9 131 64.1
HPP92_014386 Vanilla planifolia HOM05D005792 ORTHO05D007171 1.8e-35 154.1 113 61.9
Haze_26844 Corylus avellana HOM05D005792 ORTHO05D007171 3.4e-34 149.8 309 33.0
Cre06.g308100 Chlamydomonas reinhardtii HOM05D005792 ORTHO05D007171 5.9e-34 149.1 314 35.0
TAR625G0970 Trochodendron aralioides HOM05D005792 ORTHO05D007171 3.8e-33 146.4 108 63.9
Hund05135 Selenicereus undatus HOM05D005792 ORTHO05D007171 2.2e-28 130.6 278 32.4
SalBow6G2635 Salvia bowleyana HOM05D005792 ORTHO05D007171 7.7e-26 122.1 83 67.5
CBR_g22029 Chara braunii HOM05D005792 ORTHO05D007171 3.6e-23 113.2 106 50.0
SMO174G0016 Selaginella moellendorffii HOM05D005792 ORTHO05D007171 4.5e-18 96.3 85 58.8
Mapoly0033s0029 Marchantia polymorpha HOM05D005792 ORTHO05D007171 6.3e-12 75.9 161 31.7
ATR0661G053 Amborella trichopoda HOM05D005792 ORTHO05D007171 1.4e-11 74.7 51 64.7
COL.COLO4_12452 Corchorus olitorius HOM05D005792 ORTHO05D007171 2.4e-11 73.9 74 56.8
Sabra02G0010700 Salix brachista HOM05D000201 ORTHO05D000490 2.4e-11 73.9 63 55.6
SMO174G0053 Selaginella moellendorffii HOM05D005792 ORTHO05D007171 2.4e-11 73.9 80 51.2
SEGI_02138 Sequoiadendron giganteum HOM05D005792 ORTHO05D007171 2.2e-09 67.4 59 50.8
Cpa.g.sc26.236 Carica papaya HOM05D005792 ORTHO05D007171 3.2e-08 63.5 36 86.1


User provided reference genes

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