Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.04G014500 Glycine max HOM05D006984 ORTHO05D008773 1.5e-138 496.1 245 100.0
Glyma.06G014500 Glycine max HOM05D006984 ORTHO05D008773 2.7e-119 432.2 253 90.5
VMungo1309G1928 Vigna mungo HOM05D006984 ORTHO05D008773 5.6e-109 397.9 248 81.9
Phvul.009G008400 Phaseolus vulgaris HOM05D006984 ORTHO05D008773 4.9e-105 384.8 246 80.1
Lj1g0018204 Lotus japonicus HOM05D006984 ORTHO05D008773 4.8e-100 368.2 255 76.1
Medtr3g116110 Medicago truncatula HOM05D006984 ORTHO05D008773 2.5e-93 345.9 248 72.6
TPR.G38185 Trifolium pratense HOM05D006984 ORTHO05D008773 2.5e-93 345.9 246 73.2
Ca_15385_v3 Cicer arietinum L. HOM05D006984 ORTHO05D008773 8.2e-92 340.9 248 71.4
Psat5g008560 Pisum sativum HOM05D006984 ORTHO05D008773 2.4e-91 339.3 247 71.3
arahy.Tifrunner.gnm1.ann1.QT2TB5 Arachis hypogaea HOM05D006984 ORTHO05D008773 1.7e-84 316.6 264 65.5
arahy.Tifrunner.gnm1.ann1.H7AW2T Arachis hypogaea HOM05D006984 ORTHO05D008773 8.2e-84 314.3 263 65.8
Lalb_Chr23g0265511 Lupinus albus HOM05D006984 ORTHO05D008773 6.1e-79 298.1 247 65.6
QL02p015743 Quercus lobata HOM05D006984 ORTHO05D008773 5.7e-77 291.6 273 58.2
Cpa.g.sc26.14 Carica papaya HOM05D006984 ORTHO05D008773 1.8e-75 286.6 239 62.3
GSVIVG01013427001 Vitis vinifera HOM05D006984 ORTHO05D008773 3.5e-74 282.3 202 67.3
TWI56G0056 Tripterygium wilfordii HOM05D006984 ORTHO05D008773 3.8e-73 278.9 197 68.5
Sabra05G0198700 Salix brachista HOM05D006984 ORTHO05D008773 5.0e-73 278.5 201 69.2
Cfa014138 Carpinus fangiana HOM05D006984 ORTHO05D008773 3.2e-72 275.8 271 57.2
Dinv13757 Davidia involucrata HOM05D006984 ORTHO05D008773 4.2e-72 275.4 212 63.7
Duzib116G0393 Durio zibethinus HOM05D006984 ORTHO05D008773 1.6e-71 273.5 203 68.0
CiPaw.07G133500 Carya illinoinensis HOM05D006984 ORTHO05D008773 2.7e-71 272.7 205 64.9
CsaV3_6G035930 Cucumis sativus L. HOM05D006984 ORTHO05D008773 2.7e-71 272.7 242 58.7
Lj3P797T41 Lonicera japonica HOM05D006984 ORTHO05D008773 4.7e-71 271.9 165 77.6
TAR628G1538 Trochodendron aralioides HOM05D006984 ORTHO05D008773 4.7e-71 271.9 202 65.3
HanXRQChr09g0241901 Helianthus annuus HOM05D006984 ORTHO05D008773 8.0e-71 271.2 231 58.0
Atru.chr13.60 Acer truncatum HOM05D006984 ORTHO05D008773 1.4e-70 270.4 199 68.3
AUR62024096 Chenopodium quinoa HOM05D006984 ORTHO05D008773 1.4e-70 270.4 201 64.7
MELO3C026518.2 Cucumis melo HOM05D006984 ORTHO05D008773 1.8e-70 270.0 199 68.8
Lj4A811G120 Lonicera japonica HOM05D006984 ORTHO05D008773 2.3e-70 269.6 164 77.4
AUR62035170 Chenopodium quinoa HOM05D006984 ORTHO05D008773 4.0e-70 268.9 201 64.7
MD16G1283100 Malus domestica HOM05D006984 ORTHO05D008773 5.2e-70 268.5 197 69.5
Haze_22863 Corylus avellana HOM05D006984 ORTHO05D008773 2.0e-69 266.5 286 53.5
Potri.005G256600 Populus trichocarpa HOM05D006984 ORTHO05D008773 4.4e-69 265.4 183 70.5
Manes.05G127800 Manihot esculenta HOM05D006984 ORTHO05D008773 5.7e-69 265.0 194 67.5
CANSAT25G0748 Cannabis sativa HOM05D006984 ORTHO05D008773 7.5e-69 264.6 249 54.6
THA.LOC104813736 Tarenaya hassleriana HOM05D006984 ORTHO05D008773 9.7e-69 264.2 197 67.5
FAN18G2056 Fragaria x ananassa HOM05D006984 ORTHO05D008773 1.3e-68 263.8 197 70.6
RcHm_v2.0_Chr7g0216691 Rosa chinensis HOM05D006984 ORTHO05D008773 2.2e-68 263.1 195 68.2
Thecc.08G099800 Theobroma cacao HOM05D006984 ORTHO05D008773 2.8e-68 262.7 192 69.3
Lsat_1_v5_gn_9_48361 Lactuca sativa HOM05D006984 ORTHO05D008773 4.8e-68 261.9 201 62.7
Ciclev10001894m.g Citrus clementina HOM05D006984 ORTHO05D008773 6.3e-68 261.5 185 70.3
FvH4_5g26100 Fragaria vesca HOM05D006984 ORTHO05D008773 6.3e-68 261.5 197 70.1
vmacro21767 Vaccinium macrocarpon HOM05D006984 ORTHO05D008773 1.1e-67 260.8 214 58.9
Sed0024892 Sechium edule HOM05D006984 ORTHO05D008773 1.8e-67 260.0 187 66.8
Prupe.5G005500 Prunus persica HOM05D006984 ORTHO05D008773 4.1e-67 258.8 194 67.5
EL10Ac1g01871 Beta vulgaris HOM05D006984 ORTHO05D008773 7.0e-67 258.1 203 64.5
AL2G36590 Arabidopsis lyrata HOM05D006984 ORTHO05D008773 1.6e-66 256.9 196 65.8
Gohir.A01G188600 Gossypium hirsutum HOM05D006984 ORTHO05D008773 2.0e-66 256.5 206 65.0
Hund01834 Selenicereus undatus HOM05D006984 ORTHO05D008773 2.7e-66 256.1 188 66.5
Nn6g31626 Nelumbo nucifera HOM05D006984 ORTHO05D008773 3.5e-66 255.8 256 54.3
CARHR070010 Cardamine hirsuta HOM05D006984 ORTHO05D008773 4.5e-66 255.4 230 59.1
Peaxi162Scf00064g01321 Petunia axillaris HOM05D006984 ORTHO05D008773 4.5e-66 255.4 194 64.9
Aa31LG4G6540 Aethionema arabicum HOM05D006984 ORTHO05D008773 7.7e-66 254.6 196 64.8
Cc10_g00260 Coffea canephora HOM05D006984 ORTHO05D008773 7.7e-66 254.6 212 59.4
AT1G76450 Arabidopsis thaliana HOM05D006984 ORTHO05D008773 1.0e-65 254.2 196 64.8
BcaC08g47243 Brassica carinata HOM05D006984 ORTHO05D008773 1.0e-65 254.2 233 56.7
CAN.G208.41 Capsicum annuum HOM05D006984 ORTHO05D008773 1.0e-65 254.2 202 62.4
ECA232G4329 Erigeron canadensis HOM05D006984 ORTHO05D008773 2.9e-65 252.7 196 61.2
Sp5g31620 Schrenkiella parvula HOM05D006984 ORTHO05D008773 2.9e-65 252.7 198 63.6
BraA07t31741Z Brassica rapa HOM05D006984 ORTHO05D008773 3.8e-65 252.3 221 59.7
Gohir.D01G180900 Gossypium hirsutum HOM05D006984 ORTHO05D008773 3.8e-65 252.3 206 64.1
BcaC08g47152 Brassica carinata HOM05D006984 ORTHO05D008773 5.0e-65 251.9 217 61.8
Gorai.002G221600 Gossypium raimondii HOM05D006984 ORTHO05D008773 5.0e-65 251.9 206 64.1
Oeu035863.2 Olea europaea HOM05D006984 ORTHO05D008773 5.0e-65 251.9 193 61.7
MSTRG.24516 Avicennia marina HOM05D006984 ORTHO05D008773 6.5e-65 251.5 195 62.1
CSS0020436 Camellia sinensis var. sinensis HOM05D006984 ORTHO05D008773 1.5e-64 250.4 207 59.4
Actinidia17077 Actinidia chinensis HOM05D006984 ORTHO05D008773 4.2e-64 248.8 205 60.5
BolC6t40095H Brassica oleracea HOM05D006984 ORTHO05D008773 5.5e-64 248.4 233 56.2
PGSC0003DMG400029399 Solanum tuberosum HOM05D006984 ORTHO05D008773 5.5e-64 248.4 194 61.9
Eucgr.F01822 Eucalyptus grandis HOM05D006984 ORTHO05D008773 7.2e-64 248.1 200 59.5
Carub.0002s2337 Capsella rubella HOM05D006984 ORTHO05D008773 9.4e-64 247.7 199 62.8
A07p42120 Brassica napus HOM05D006984 ORTHO05D008773 1.2e-63 247.3 216 59.7
Migut.N02987 Erythranthe guttata HOM05D006984 ORTHO05D008773 3.6e-63 245.7 213 57.3
SGA_v2.0_scaffold220G42646 Striga asiatica HOM05D006984 ORTHO05D008773 4.7e-63 245.4 230 53.0
Solyc12g094720.3 Solanum lycopersicum HOM05D006984 ORTHO05D008773 6.1e-63 245.0 194 62.9
Sopen12g031620 Solanum pennellii HOM05D006984 ORTHO05D008773 6.1e-63 245.0 194 62.9
MBI04_g31208_MAGBIO Magnolia biondii HOM05D006984 ORTHO05D008773 8.0e-63 244.6 174 66.7
CDE05G0055 Ceratophyllum demersum HOM05D006984 ORTHO05D008773 1.4e-62 243.8 170 68.8
Hma1.2p1_0489F.1_g164090 Hydrangea macrophylla HOM05D006984 ORTHO05D008773 2.3e-62 243.0 174 66.7
COL.COLO4_12298 Corchorus olitorius HOM05D006984 ORTHO05D008773 5.2e-62 241.9 200 62.5
Sc15g0004070 Simmondsia chinensis HOM05D006984 ORTHO05D008773 1.2e-61 240.7 168 66.1
C06p50690 Brassica napus HOM05D006984 ORTHO05D008773 2.6e-61 239.6 225 56.0
FAN13G1472 Fragaria x ananassa HOM05D006984 ORTHO05D008773 2.6e-61 239.6 230 58.7
CDE05G2674 Ceratophyllum demersum HOM05D006984 ORTHO05D008773 3.4e-61 239.2 200 61.0
FAN08G1099 Fragaria x ananassa HOM05D006984 ORTHO05D008773 3.4e-61 239.2 197 65.0
PSO541G1597 Papaver somniferum HOM05D006984 ORTHO05D008773 5.7e-61 238.4 210 55.2
Thhalv10019042m.g Eutrema salsugineum HOM05D006984 ORTHO05D008773 9.8e-61 237.7 198 61.6
ClCG08G009180 Citrullus lanatus HOM05D006984 ORTHO05D008773 1.3e-60 237.3 209 60.8
Nitab4.5_0000407g0010 Nicotiana tabacum HOM05D006984 ORTHO05D008773 1.3e-60 237.3 166 66.9
Os08g0512500 Oryza sativa ssp. japonica HOM05D006984 ORTHO05D008773 8.3e-60 234.6 211 55.9
FAN04G1410 Fragaria x ananassa HOM05D006984 ORTHO05D008773 7.0e-59 231.5 203 62.6
Aqoxy6G02992 Aquilegia oxysepala HOM05D006984 ORTHO05D008773 2.0e-58 229.9 224 54.9
unitig_22.g5726 Utricularia gibba HOM05D006984 ORTHO05D008773 7.7e-58 228.0 194 55.7
PGR083G2821 Punica granatum HOM05D006984 ORTHO05D008773 2.3e-57 226.5 144 72.9
ATR0001G027 Amborella trichopoda HOM05D006984 ORTHO05D008773 7.2e-56 221.5 229 49.8
Rhsim06G0003200 Rhododendron simsii HOM05D006984 ORTHO05D008773 2.2e-52 209.9 298 41.9
Hma1.2p1_0489F.1_g164100 Hydrangea macrophylla HOM05D006984 ORTHO05D008773 1.3e-49 200.7 122 74.6
Nitab4.5_0003423g0020 Nicotiana tabacum HOM05D006984 ORTHO05D008773 1.6e-47 193.7 187 55.1
Pp3c4_15070 Physcomitrium patens HOM05D006984 ORTHO05D008773 4.0e-46 189.1 198 46.0
Mapoly0008s0218 Marchantia polymorpha HOM05D006984 ORTHO05D008773 2.0e-45 186.8 200 45.0
Ah.11g041950 Amaranthus hybridus HOM05D006984 ORTHO05D008773 8.6e-41 171.4 132 65.2
AagrBONN_evm.TU.Sc2ySwM_117.1863 Anthoceros agrestis HOM05D006984 ORTHO05D008773 8.6e-41 171.4 178 46.1
SMO245G0004 Selaginella moellendorffii HOM05D006984 ORTHO05D008773 3.5e-34 149.4 193 37.8
Zm00001eb035340 Zea mays HOM05D006984 ORTHO05D008773 5.2e-30 135.6 177 45.2
CBR_g51937 Chara braunii HOM05D006984 ORTHO05D008773 6.8e-30 135.2 160 41.2
Medtr6g034285 Medicago truncatula HOM05D000394 ORTHO05D008773 1.0e-25 121.3 66 80.3
PGSC0003DMG400008742 Solanum tuberosum HOM05D006984 ORTHO05D008773 4.0e-22 109.4 106 57.5
PGSC0003DMG400021762 Solanum tuberosum HOM05D006984 ORTHO05D008773 5.2e-22 109.0 85 61.2
Cre10.g446350 Chlamydomonas reinhardtii HOM05D006984 ORTHO05D008773 1.2e-21 107.8 212 34.0
MCO13G452 Micromonas commoda HOM05D006984 ORTHO05D008773 5.8e-21 105.5 197 31.5
PRCOL_00004638 Prasinoderma coloniale HOM05D006984 ORTHO05D008773 3.2e-19 99.8 163 34.4
Sopen12g026780 Solanum pennellii HOM05D000004 ORTHO05D000002 2.3e-17 93.6 78 56.4
Psat7g136640 Pisum sativum HOM05D006984 ORTHO05D008773 5.2e-14 82.4 101 48.5
Psat6g152480 Pisum sativum HOM05D006984 ORTHO05D008773 2.1e-10 70.5 94 43.6
Psat6g152440 Pisum sativum HOM05D006984 ORTHO05D000789 1.1e-08 64.7 32 87.5


User provided reference genes

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