Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.04G013400 Glycine max HOM05D007227 ORTHO05D002252 2.4e-50 201.8 98 100.0
Glyma.06G013300 Glycine max HOM05D007227 ORTHO05D002252 1.4e-37 159.5 95 84.2
Phvul.009G024600 Phaseolus vulgaris HOM05D007227 ORTHO05D002252 3.0e-29 131.7 89 70.8
Lj1g0025376 Lotus japonicus HOM05D007227 ORTHO05D002252 5.7e-28 127.5 95 70.5
Lalb_Chr23g0265441 Lupinus albus HOM05D007227 ORTHO05D002252 4.1e-26 121.3 94 66.0
Lalb_Chr19g0138601 Lupinus albus HOM05D007227 ORTHO05D002252 1.2e-25 119.8 96 66.7
Glyma.11G119200 Glycine max HOM05D007227 ORTHO05D002252 7.7e-25 117.1 90 72.2
Lj3g0002713 Lotus japonicus HOM05D007227 ORTHO05D002252 1.0e-24 116.7 98 64.3
Medtr4g069770 Medicago truncatula HOM05D007227 ORTHO05D002252 2.2e-24 115.5 95 63.2
LjContig00081g0009252 Lotus japonicus HOM05D007227 ORTHO05D002252 5.0e-24 114.4 88 62.5
Phvul.011G046400 Phaseolus vulgaris HOM05D007227 ORTHO05D002252 6.5e-24 114.0 85 67.1
TPR.G38124 Trifolium pratense HOM05D007227 ORTHO05D002252 6.5e-24 114.0 86 65.1
LjContig00272g0019714 Lotus japonicus HOM05D007227 ORTHO05D002252 1.1e-23 113.2 88 63.6
Glyma.12G044400 Glycine max HOM05D007227 ORTHO05D002252 1.9e-23 112.5 87 72.4
VMungo1127G0518 Vigna mungo HOM05D007227 ORTHO05D002252 7.2e-23 110.5 84 60.7
Psat7g141720 Pisum sativum HOM05D007227 ORTHO05D002252 2.1e-22 109.0 97 55.7
TPR.G9008 Trifolium pratense HOM05D007227 ORTHO05D002252 2.7e-22 108.6 97 58.8
Glyma.02G300900 Glycine max HOM05D007227 ORTHO05D002252 4.7e-22 107.8 101 58.4
LjContig00081g0025580 Lotus japonicus HOM05D007227 ORTHO05D002252 1.0e-21 106.7 99 56.6
arahy.Tifrunner.gnm1.ann1.9WD8WJ Arachis hypogaea HOM05D007227 ORTHO05D002252 3.0e-21 105.1 101 60.4
Medtr5g095980 Medicago truncatula HOM05D007227 ORTHO05D002252 3.0e-21 105.1 88 61.4
arahy.Tifrunner.gnm1.ann1.16ZZBQ Arachis hypogaea HOM05D007227 ORTHO05D002252 1.1e-20 103.2 87 63.2
arahy.Tifrunner.gnm1.ann1.ZTQ30L Arachis hypogaea HOM05D007227 ORTHO05D002252 9.7e-20 100.1 87 62.1
Medtr3g007880 Medicago truncatula HOM05D007227 ORTHO05D002252 2.2e-19 99.0 88 56.8
arahy.Tifrunner.gnm1.ann1.24P8DN Arachis hypogaea HOM05D007227 ORTHO05D002252 2.4e-18 95.5 97 51.5
arahy.Tifrunner.gnm1.ann1.3LC685 Arachis hypogaea HOM05D007227 ORTHO05D002252 4.1e-18 94.7 97 51.5
TPR.G8589 Trifolium pratense HOM05D007227 ORTHO05D002252 5.3e-18 94.4 74 62.2
arahy.Tifrunner.gnm1.ann1.BHH580 Arachis hypogaea HOM05D007227 ORTHO05D002252 4.5e-17 91.3 101 53.5
Cfa005018 Carpinus fangiana HOM05D007227 ORTHO05D002252 2.9e-16 88.6 92 53.3
Psat2g007160 Pisum sativum HOM05D007227 ORTHO05D002252 2.9e-16 88.6 92 53.3
CiPaw.05G063200 Carya illinoinensis HOM05D007227 ORTHO05D002252 3.8e-16 88.2 88 50.0
GSVIVG01031940001 Vitis vinifera HOM05D007227 ORTHO05D002252 2.5e-15 85.5 81 51.9
RcHm_v2.0_Chr6g0263881 Rosa chinensis HOM05D007227 ORTHO05D002252 5.5e-15 84.3 107 42.1
CiPaw.06G136700 Carya illinoinensis HOM05D007227 ORTHO05D002252 1.2e-14 83.2 80 51.2
Dinv23539 Davidia involucrata HOM05D007227 ORTHO05D002252 1.6e-14 82.8 92 47.8
Psat2g007200 Pisum sativum HOM05D007227 ORTHO05D002252 3.6e-14 81.6 92 50.0
Dinv42073 Davidia involucrata HOM05D007227 ORTHO05D002252 4.7e-14 81.3 109 43.1
Ciclev10029608m.g Citrus clementina HOM05D007227 ORTHO05D002252 8.0e-14 80.5 98 42.9
Eucgr.I01259 Eucalyptus grandis HOM05D007227 ORTHO05D002252 1.0e-13 80.1 85 44.7
QL11p043287 Quercus lobata HOM05D007227 ORTHO05D002252 1.0e-13 80.1 72 52.8
COL.COLO4_17856 Corchorus olitorius HOM05D007227 ORTHO05D002252 1.8e-13 79.3 90 50.0
Thecc.02G037700 Theobroma cacao HOM05D007227 ORTHO05D002252 1.8e-13 79.3 98 46.9
SalBow3G1687 Salvia bowleyana HOM05D007227 ORTHO05D002252 4.0e-13 78.2 72 54.2
Sabra04G0101600 Salix brachista HOM05D007227 ORTHO05D002252 6.8e-13 77.4 92 45.7
Oeu014341.1 Olea europaea HOM05D007227 ORTHO05D002252 8.8e-13 77.0 75 48.0
Potri.009G114800 Populus trichocarpa HOM05D007556 ORTHO05D002252 1.5e-12 76.3 96 40.6
FAN24G3084 Fragaria x ananassa HOM05D007227 ORTHO05D002252 2.0e-12 75.9 99 39.4
FvH4_2g08520 Fragaria vesca HOM05D007227 ORTHO05D002252 2.6e-12 75.5 99 39.4
FAN27G2103 Fragaria x ananassa HOM05D007227 ORTHO05D002252 2.6e-12 75.5 99 38.4
Gorai.005G261600 Gossypium raimondii HOM05D007227 ORTHO05D002252 2.6e-12 75.5 94 41.5
Lsat_1_v5_gn_9_109540 Lactuca sativa HOM05D007227 ORTHO05D002252 2.6e-12 75.5 71 45.1
MD00G1082000 Malus domestica HOM05D007227 ORTHO05D002252 3.4e-12 75.1 91 44.0
TWI75G0964 Tripterygium wilfordii HOM05D007227 ORTHO05D002252 4.4e-12 74.7 76 44.7
FAN15G1220 Fragaria x ananassa HOM05D007227 ORTHO05D002252 5.7e-12 74.3 104 35.6
Gohir.A03G212200 Gossypium hirsutum HOM05D007227 ORTHO05D002252 7.5e-12 73.9 94 41.5
Prupe.8G099800 Prunus persica HOM05D007227 ORTHO05D002252 7.5e-12 73.9 99 41.4
Manes.17G100100 Manihot esculenta HOM05D007227 ORTHO05D002252 1.7e-11 72.8 80 48.8
Potri.009G114701 Populus trichocarpa HOM05D007556 ORTHO05D002252 1.7e-11 72.8 96 37.5
Gohir.D01G169400 Gossypium hirsutum HOM05D007227 ORTHO05D002252 2.2e-11 72.4 90 42.2
Gohir.D02G233600 Gossypium hirsutum HOM05D007227 ORTHO05D002252 2.2e-11 72.4 94 41.5
TWI31G0501 Tripterygium wilfordii HOM05D007227 ORTHO05D002252 2.2e-11 72.4 77 45.5
arahy.Tifrunner.gnm1.ann1.YB55U6 Arachis hypogaea HOM05D007227 ORTHO05D002252 2.8e-11 72.0 67 56.7
Sed0019925 Sechium edule HOM05D007227 ORTHO05D002252 2.8e-11 72.0 77 41.6
MD10G1078100 Malus domestica HOM05D007227 ORTHO05D002252 3.7e-11 71.6 80 45.0
Gorai.002G211000 Gossypium raimondii HOM05D007227 ORTHO05D002252 4.8e-11 71.2 107 39.3
Potri.004G153200 Populus trichocarpa HOM05D007227 ORTHO05D002252 6.3e-11 70.9 78 47.4
Prupe.8G098600 Prunus persica HOM05D007556 ORTHO05D002252 6.3e-11 70.9 108 38.9
MSTRG.20093 Avicennia marina HOM05D007227 ORTHO05D002252 8.3e-11 70.5 86 40.7
Actinidia00509 Actinidia chinensis HOM05D007556 ORTHO05D002252 1.1e-10 70.1 87 42.5
Gohir.A01G178500 Gossypium hirsutum HOM05D007227 ORTHO05D002252 1.1e-10 70.1 107 39.3
CSS0026369 Camellia sinensis var. sinensis HOM05D007227 ORTHO05D002252 1.4e-10 69.7 79 44.3
Potri.009G114400 Populus trichocarpa HOM05D007227 ORTHO05D002252 1.8e-10 69.3 92 42.4
GSVIVG01031948001 Vitis vinifera HOM05D007556 ORTHO05D002252 1.8e-10 69.3 94 40.4
Peaxi162Scf00016g00938 Petunia axillaris HOM05D007227 ORTHO05D002252 3.1e-10 68.6 93 37.6
MSTRG.27703 Avicennia marina HOM05D007227 ORTHO05D002252 4.1e-10 68.2 96 39.6
Actinidia00511 Actinidia chinensis HOM05D007227 ORTHO05D002252 5.4e-10 67.8 94 40.4
HanXRQChr16g0505811 Helianthus annuus HOM05D007227 ORTHO05D002252 5.4e-10 67.8 85 41.2
PGR042G2841 Punica granatum HOM05D007227 ORTHO05D002252 7.0e-10 67.4 81 46.9
PGR142G1531 Punica granatum HOM05D007227 ORTHO05D002252 7.0e-10 67.4 81 44.4
SalBow6G0041 Salvia bowleyana HOM05D007227 ORTHO05D002252 7.0e-10 67.4 68 47.1
SalBow6G1279 Salvia bowleyana HOM05D007227 ORTHO05D002252 7.0e-10 67.4 68 47.1
ECA236G1258 Erigeron canadensis HOM05D007227 ORTHO05D002252 9.1e-10 67.0 79 38.0
Duzib132G0468 Durio zibethinus HOM05D007227 ORTHO05D002252 1.2e-09 66.6 102 40.2
HanXRQChr04g0127891 Helianthus annuus HOM05D007227 ORTHO05D002252 1.2e-09 66.6 80 40.0
Dinv23538 Davidia involucrata HOM05D007556 ORTHO05D002252 2.7e-09 65.5 96 38.5
FAN24G0729 Fragaria x ananassa HOM05D007227 ORTHO05D002252 3.5e-09 65.1 76 43.4
Manes.07G098300 Manihot esculenta HOM05D007556 ORTHO05D002252 3.5e-09 65.1 91 41.8
Prupe.8G099600 Prunus persica HOM05D007556 ORTHO05D002252 3.5e-09 65.1 108 37.0
CSS0037950 Camellia sinensis var. sinensis HOM05D007227 ORTHO05D002252 4.5e-09 64.7 94 39.4
Lj9C368G9 Lonicera japonica HOM05D007227 ORTHO05D002252 4.5e-09 64.7 75 45.3
Manes.07G098500 Manihot esculenta HOM05D007556 ORTHO05D002252 5.9e-09 64.3 91 36.3
QL11p043321 Quercus lobata HOM05D007556 ORTHO05D002252 5.9e-09 64.3 91 41.8
AUR62011338 Chenopodium quinoa HOM05D007227 ORTHO05D002252 7.7e-09 63.9 70 47.1
Hund00277 Selenicereus undatus HOM05D013587 ORTHO05D002252 1.0e-08 63.5 80 41.2
GSVIVG01031943001 Vitis vinifera HOM05D007556 ORTHO05D002252 1.3e-08 63.2 91 37.4
Atru.chr5.2993 Acer truncatum HOM05D007227 ORTHO05D002252 1.7e-08 62.8 108 39.8
EL10Ac9g21739 Beta vulgaris HOM05D007227 ORTHO05D002252 1.7e-08 62.8 71 42.3
CsaV3_2G014630 Cucumis sativus L. HOM05D007227 ORTHO05D002252 2.2e-08 62.4 87 35.6
Peaxi162Scf00003g01323 Petunia axillaris HOM05D007227 ORTHO05D002252 2.2e-08 62.4 93 37.6
Prupe.8G098800 Prunus persica HOM05D007556 ORTHO05D002252 2.9e-08 62.0 104 36.5
TWI31G1433 Tripterygium wilfordii HOM05D007227 ORTHO05D002252 2.9e-08 62.0 78 39.7
Ah.01g019500 Amaranthus hybridus HOM05D007227 ORTHO05D002252 3.8e-08 61.6 98 37.8
Nitab4.5_0001794g0120 Nicotiana tabacum HOM05D007227 ORTHO05D002252 3.8e-08 61.6 59 47.5
TAR628G1474 Trochodendron aralioides HOM05D007556 ORTHO05D002252 3.8e-08 61.6 102 37.3
AUR62016714 Chenopodium quinoa HOM05D013587 ORTHO05D002252 5.0e-08 61.2 79 39.2
Manes.07G098400 Manihot esculenta HOM05D007556 ORTHO05D002252 6.5e-08 60.8 76 40.8
ClCG11G004490 Citrullus lanatus HOM05D007227 ORTHO05D002252 8.5e-08 60.5 102 35.3
Prupe.8G099400 Prunus persica HOM05D007556 ORTHO05D002252 1.1e-07 60.1 110 34.5
Solyc10g009150.3 Solanum lycopersicum HOM05D007556 ORTHO05D002252 1.1e-07 60.1 84 41.7
TAR628G0569 Trochodendron aralioides HOM05D007556 ORTHO05D002252 1.5e-07 59.7 102 36.3
AUR62011343 Chenopodium quinoa HOM05D013587 ORTHO05D002252 1.9e-07 59.3 107 37.4
AUR62011345 Chenopodium quinoa HOM05D013587 ORTHO05D002252 1.9e-07 59.3 107 37.4
Migut.N01231 Erythranthe guttata HOM05D007227 ORTHO05D002252 1.9e-07 59.3 78 41.0
Glyma.17G150700 Glycine max HOM05D007227 ORTHO05D002252 1.9e-07 59.3 70 50.0
Sopen10g004930 Solanum pennellii HOM05D007556 ORTHO05D002252 1.9e-07 59.3 84 41.7
CSS0038929 Camellia sinensis var. sinensis HOM05D007227 ORTHO05D002252 2.5e-07 58.9 88 35.2
GSVIVG01031946001 Vitis vinifera HOM05D007556 ORTHO05D002252 2.5e-07 58.9 54 48.1
Glyma.14G013250 Glycine max HOM05D007227 ORTHO05D002252 3.2e-07 58.5 47 63.8
Sc08g0000440 Simmondsia chinensis HOM05D007227 ORTHO05D002252 3.2e-07 58.5 85 42.4
BcaC06g36704 Brassica carinata HOM05D009461 ORTHO05D002252 4.2e-07 58.2 70 42.9
A07p00480 Brassica napus HOM05D009461 ORTHO05D002252 4.2e-07 58.2 70 42.9
C07p00920 Brassica napus HOM05D009461 ORTHO05D002252 4.2e-07 58.2 70 42.9
BolC7t40528H Brassica oleracea HOM05D009461 ORTHO05D002252 4.2e-07 58.2 70 42.9
BraA07t27839Z Brassica rapa HOM05D009461 ORTHO05D002252 4.2e-07 58.2 70 42.9
Thhalv10011902m.g Eutrema salsugineum HOM05D009461 ORTHO05D002252 4.2e-07 58.2 70 44.3
Nitab4.5_0010789g0020 Nicotiana tabacum HOM05D007556 ORTHO05D002252 4.2e-07 58.2 95 38.9
TWI79G0288 Tripterygium wilfordii HOM05D007556 ORTHO05D002252 4.2e-07 58.2 92 40.2
BcaC08g43126 Brassica carinata HOM05D009461 ORTHO05D002252 7.2e-07 57.4 70 42.9
A06p03910 Brassica napus HOM05D009461 ORTHO05D002252 7.2e-07 57.4 71 42.3
C06p04010 Brassica napus HOM05D009461 ORTHO05D002252 7.2e-07 57.4 70 42.9
BraA06t23599Z Brassica rapa HOM05D009461 ORTHO05D002252 7.2e-07 57.4 71 42.3
Sc18g0004580 Simmondsia chinensis HOM05D007556 ORTHO05D002252 7.2e-07 57.4 97 30.9
BcaC05g27512 Brassica carinata HOM05D009461 ORTHO05D002252 9.4e-07 57.0 70 42.9
C05p34820 Brassica napus HOM05D009461 ORTHO05D002252 9.4e-07 57.0 70 42.9
vmacro02121 Vaccinium macrocarpon HOM05D007556 ORTHO05D002252 9.4e-07 57.0 93 34.4
vmacro17186 Vaccinium macrocarpon HOM05D007556 ORTHO05D002252 9.4e-07 57.0 93 34.4
BcaB07g33682 Brassica carinata HOM05D009461 ORTHO05D002252 1.2e-06 56.6 73 41.1
Rhsim11G0175100 Rhododendron simsii HOM05D007556 ORTHO05D002252 1.2e-06 56.6 93 36.6
MELO3C020982.2 Cucumis melo HOM05D007227 ORTHO05D002252 1.6e-06 56.2 85 34.1
Medtr3g116395 Medicago truncatula HOM05D007227 ORTHO05D002252 1.6e-06 56.2 54 53.7
BolC6t35534H Brassica oleracea HOM05D009461 ORTHO05D002252 2.1e-06 55.8 70 41.4
Gohir.D04G164160 Gossypium hirsutum HOM05D007556 ORTHO05D002252 2.1e-06 55.8 78 42.3
Lsat_1_v5_gn_7_89361 Lactuca sativa HOM05D007227 ORTHO05D002252 2.1e-06 55.8 53 45.3
Carub.0001s3848 Capsella rubella HOM05D009461 ORTHO05D002252 2.7e-06 55.5 71 42.3
HanXRQChr13g0410611 Helianthus annuus HOM05D017364 ORTHO05D002252 2.7e-06 55.5 98 32.7
Nitab4.5_0002168g0010 Nicotiana tabacum HOM05D007556 ORTHO05D002252 2.7e-06 55.5 93 37.6
Sopen01g051670 Solanum pennellii HOM05D007227 ORTHO05D002252 2.7e-06 55.5 78 34.6
Rhsim11G0175600 Rhododendron simsii HOM05D007556 ORTHO05D002252 3.6e-06 55.1 93 35.5
Cfa007848 Carpinus fangiana HOM05D033200 ORTHO05D022252 4.7e-06 54.7 91 38.5
Cc07_g14570 Coffea canephora HOM05D007227 ORTHO05D002252 6.1e-06 54.3 80 36.2
Hma1.2p1_0066F.1_g036560 Hydrangea macrophylla HOM05D007556 ORTHO05D002252 6.1e-06 54.3 89 36.0
Rhsim11G0174800 Rhododendron simsii HOM05D007227 ORTHO05D002252 6.1e-06 54.3 73 37.0
Thecc.02G086700 Theobroma cacao HOM05D007556 ORTHO05D002252 6.1e-06 54.3 59 49.2
CAN.G132.5 Capsicum annuum HOM05D007556 ORTHO05D002252 8.0e-06 53.9 75 42.7
Duzib132G0033 Durio zibethinus HOM05D007556 ORTHO05D002252 8.0e-06 53.9 64 46.9
Nitab4.5_0000618g0010 Nicotiana tabacum HOM05D007556 ORTHO05D002252 8.0e-06 53.9 82 39.0
Rhsim11G0175400 Rhododendron simsii HOM05D007556 ORTHO05D002252 8.0e-06 53.9 93 35.5
Sp1g36190 Schrenkiella parvula HOM05D009461 ORTHO05D002252 8.0e-06 53.9 70 40.0
Hund00291 Selenicereus undatus HOM05D013587 ORTHO05D002252 8.0e-06 53.9 66 39.4


User provided reference genes

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