Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.04G009400 Glycine max HOM05D008201 ORTHO05D005639 4.0e-74 282.0 215 100.0
Glyma.06G009350 Glycine max HOM05D015205 ORTHO05D005639 1.1e-20 104.4 179 45.3
Manes.05G140400 Manihot esculenta HOM05D008201 ORTHO05D005639 1.1e-18 97.8 223 62.8
arahy.Tifrunner.gnm1.ann1.DA1J6X Arachis hypogaea HOM05D008201 ORTHO05D005639 9.0e-18 94.7 230 53.5
arahy.Tifrunner.gnm1.ann1.QP4M0U Arachis hypogaea HOM05D008201 ORTHO05D005639 2.0e-17 93.6 228 50.0
Psat5g004800 Pisum sativum HOM05D015205 ORTHO05D005639 4.2e-15 85.9 198 46.5
TPR.G32200 Trifolium pratense HOM05D015205 ORTHO05D005639 4.2e-15 85.9 200 46.5
VMungo1309G0668 Vigna mungo HOM05D015205 ORTHO05D005639 4.2e-15 85.9 218 57.3
Gohir.A05G181000 Gossypium hirsutum HOM05D008201 ORTHO05D005639 3.5e-14 82.8 154 62.3
Gorai.009G189500 Gossypium raimondii HOM05D008201 ORTHO05D005639 3.5e-14 82.8 177 61.0
Duzib093G2238 Durio zibethinus HOM05D008201 ORTHO05D005639 5.1e-13 79.0 228 56.6
Lj1g0003360 Lotus japonicus HOM05D015205 ORTHO05D005639 5.1e-13 79.0 164 56.1
Sopen04g035830 Solanum pennellii HOM05D014976 ORTHO05D005639 6.7e-13 78.6 224 55.8
Lalb_Chr19g0131701 Lupinus albus HOM05D008201 ORTHO05D005639 1.9e-12 77.0 225 47.1
Gohir.A01G107800 Gossypium hirsutum HOM05D008201 ORTHO05D005639 3.3e-12 76.3 184 47.8
Potri.005G248100 Populus trichocarpa HOM05D008201 ORTHO05D005639 7.4e-12 75.1 228 48.2
Phvul.009G004400 Phaseolus vulgaris HOM05D015205 ORTHO05D005639 1.6e-11 73.9 219 58.0
Medtr3g117290 Medicago truncatula HOM05D015205 ORTHO05D005639 2.8e-11 73.2 173 41.6
PGSC0003DMG400009968 Solanum tuberosum HOM05D014976 ORTHO05D005639 2.8e-11 73.2 223 54.7
Ca_15345_v3 Cicer arietinum L. HOM05D015205 ORTHO05D005639 4.8e-11 72.4 159 38.4
Ca_30250_v3 Cicer arietinum L. HOM05D015205 ORTHO05D005639 4.8e-11 72.4 159 38.4
FAN27G2977 Fragaria x ananassa HOM05D008201 ORTHO05D005639 4.8e-11 72.4 269 43.1
Ciclev10002349m.g Citrus clementina HOM05D008201 ORTHO05D005639 1.4e-10 70.9 157 51.6
CiPaw.08G071500 Carya illinoinensis HOM05D008201 ORTHO05D005639 3.1e-10 69.7 132 55.3
Prupe.1G356400 Prunus persica HOM05D008201 ORTHO05D005639 3.1e-10 69.7 233 51.9
Aqoxy6G01838 Aquilegia oxysepala HOM05D008201 ORTHO05D005639 6.9e-10 68.6 240 44.2
CAN.G311.98 Capsicum annuum HOM05D014976 ORTHO05D005639 6.9e-10 68.6 230 51.3
Gorai.002G119600 Gossypium raimondii HOM05D008201 ORTHO05D005639 6.9e-10 68.6 72 52.8
Gohir.D01G094300 Gossypium hirsutum HOM05D008201 ORTHO05D005639 2.0e-09 67.0 214 45.8
Lj4A14T47 Lonicera japonica HOM05D008201 ORTHO05D005639 2.0e-09 67.0 203 44.8
CSS0003901 Camellia sinensis var. sinensis HOM05D008201 ORTHO05D005639 2.6e-09 66.6 163 51.5
TAR376G0148 Trochodendron aralioides HOM05D008201 ORTHO05D005639 4.5e-09 65.9 230 51.3
FAN15G2778 Fragaria x ananassa HOM05D008201 ORTHO05D005639 7.6e-09 65.1 267 43.4
Lj5g0017965 Lotus japonicus HOM05D008201 ORTHO05D005639 9.9e-09 64.7 236 46.6
SGA_v2.0_scaffold275G46576 Striga asiatica HOM05D014976 ORTHO05D005639 1.3e-08 64.3 227 56.4
Thecc.08G055500 Theobroma cacao HOM05D008201 ORTHO05D005639 1.3e-08 64.3 242 55.8
MD08G1004500 Malus domestica HOM05D008201 ORTHO05D005639 1.7e-08 63.9 250 38.4
Cc10_g00870 Coffea canephora HOM05D014976 ORTHO05D005639 2.9e-08 63.2 214 60.3
Peaxi162Scf00174g01621 Petunia axillaris HOM05D014976 ORTHO05D005639 2.9e-08 63.2 221 50.2
FAN20G0338 Fragaria x ananassa HOM05D008201 ORTHO05D005639 4.9e-08 62.4 260 43.8
Oeu016882.1 Olea europaea HOM05D008201 ORTHO05D005639 6.4e-08 62.0 158 50.6
Carub.0002s2307 Capsella rubella HOM05D008570 ORTHO05D005639 1.1e-07 61.2 90 50.0
TWI36G0214 Tripterygium wilfordii HOM05D008201 ORTHO05D005639 1.1e-07 61.2 225 44.0
TAR628G0948 Trochodendron aralioides HOM05D008201 ORTHO05D005639 1.4e-07 60.8 166 52.4
Nitab4.5_0000588g0250 Nicotiana tabacum HOM05D014976 ORTHO05D005639 1.9e-07 60.5 224 47.3
AL2G36240 Arabidopsis lyrata HOM05D008570 ORTHO05D005639 2.4e-07 60.1 66 62.1
AT1G76180 Arabidopsis thaliana HOM05D008570 ORTHO05D005639 2.4e-07 60.1 141 57.4
MD15G1003900 Malus domestica HOM05D008201 ORTHO05D005639 3.2e-07 59.7 267 38.6
Gohir.D05G184000 Gossypium hirsutum HOM05D008201 ORTHO05D005639 4.2e-07 59.3 154 56.5
FvH4_2g37690 Fragaria vesca HOM05D008201 ORTHO05D005639 5.5e-07 58.9 268 41.8
Lsat_1_v5_gn_8_27820 Lactuca sativa HOM05D008201 ORTHO05D005639 5.5e-07 58.9 148 52.0
vmacro04391 Vaccinium macrocarpon HOM05D008201 ORTHO05D005639 5.5e-07 58.9 61 59.0
HanXRQChr08g0216051 Helianthus annuus HOM05D008201 ORTHO05D005639 9.3e-07 58.2 220 52.3
BcaC08g47283 Brassica carinata HOM05D008570 ORTHO05D005639 1.2e-06 57.8 92 48.9
BolC6t40053H Brassica oleracea HOM05D008570 ORTHO05D005639 1.2e-06 57.8 92 48.9
BolC2t09364H Brassica oleracea HOM05D008570 ORTHO05D005639 1.6e-06 57.4 89 49.4
CARHR069730 Cardamine hirsuta HOM05D008570 ORTHO05D005639 4.6e-06 55.8 84 47.6
SalBow6G7161 Salvia bowleyana HOM05D014976 ORTHO05D005639 4.6e-06 55.8 144 33.3
A07p28610 Brassica napus HOM05D008570 ORTHO05D005639 6.0e-06 55.5 91 49.5
Dinv39575 Davidia involucrata HOM05D008201 ORTHO05D005639 6.0e-06 55.5 177 49.7


User provided reference genes

Program Settings