Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.04G007900 Glycine max HOM05D007135 ORTHO05D008880 6.2e-61 237.3 119 100.0
Glyma.06G007700 Glycine max HOM05D007135 ORTHO05D008880 4.3e-30 134.8 79 88.6
Phvul.009G002700 Phaseolus vulgaris HOM05D007135 ORTHO05D008880 3.5e-24 115.2 74 83.8
Nn5g29239 Nelumbo nucifera HOM05D007135 ORTHO05D008880 1.3e-18 96.7 66 75.8
Lalb_Chr23g0265121 Lupinus albus HOM05D007135 ORTHO05D008880 5.0e-18 94.7 67 71.6
Lalb_Chr23g0265141 Lupinus albus HOM05D007135 ORTHO05D008880 5.0e-18 94.7 67 71.6
TAR381G0296 Trochodendron aralioides HOM05D007135 ORTHO05D008880 2.5e-17 92.4 70 71.4
Medtr3g117570 Medicago truncatula HOM05D007135 ORTHO05D008880 3.2e-17 92.0 82 63.4
COL.COLO4_26047 Corchorus olitorius HOM05D007135 ORTHO05D008880 9.4e-17 90.5 79 63.3
Lj1g0005652 Lotus japonicus HOM05D007135 ORTHO05D008880 9.4e-17 90.5 71 67.6
Psat5g003840 Pisum sativum HOM05D007135 ORTHO05D008880 1.2e-16 90.1 78 61.5
Ca_15331_v3 Cicer arietinum L. HOM05D007135 ORTHO05D008880 2.1e-16 89.4 78 61.5
ClCG02G004560 Citrullus lanatus HOM05D007135 ORTHO05D008880 2.7e-16 89.0 78 61.5
Dinv26818 Davidia involucrata HOM05D000193 ORTHO05D000402 2.7e-16 89.0 78 64.1
Thecc.02G074900 Theobroma cacao HOM05D007135 ORTHO05D008880 3.6e-16 88.6 78 61.5
Duzib248G1605 Durio zibethinus HOM05D007135 ORTHO05D008880 4.6e-16 88.2 78 62.8
Aqoxy2G03368 Aquilegia oxysepala HOM05D007135 ORTHO05D008880 7.9e-16 87.4 80 60.0
Gohir.A03G200700 Gossypium hirsutum HOM05D007135 ORTHO05D008880 7.9e-16 87.4 50 86.0
Sed0017056 Sechium edule HOM05D007135 ORTHO05D008880 7.9e-16 87.4 75 62.7
TWI79G1445 Tripterygium wilfordii HOM05D007135 ORTHO05D008880 7.9e-16 87.4 82 59.8
Rhsim05G0068200 Rhododendron simsii HOM05D007135 ORTHO05D008880 1.0e-15 87.0 77 59.7
TPR.G32169 Trifolium pratense HOM05D007135 ORTHO05D008880 1.0e-15 87.0 81 59.3
CSS0018566 Camellia sinensis var. sinensis HOM05D007135 ORTHO05D008880 1.4e-15 86.7 75 62.7
vmacro17421 Vaccinium macrocarpon HOM05D007135 ORTHO05D008880 1.8e-15 86.3 78 61.5
Gohir.D02G222000 Gossypium hirsutum HOM05D007135 ORTHO05D008880 2.3e-15 85.9 50 84.0
Gorai.005G250000 Gossypium raimondii HOM05D007135 ORTHO05D008880 2.3e-15 85.9 50 84.0
MELO3C013419.2 Cucumis melo HOM05D007135 ORTHO05D008880 3.0e-15 85.5 78 59.0
PSO675G0190 Papaver somniferum HOM05D007135 ORTHO05D008880 3.0e-15 85.5 70 61.4
Ciclev10029699m.g Citrus clementina HOM05D007135 ORTHO05D008880 3.9e-15 85.1 73 64.4
PSO541G1924 Papaver somniferum HOM05D007135 ORTHO05D008880 3.9e-15 85.1 70 60.0
FAN27G3517 Fragaria x ananassa HOM05D007135 ORTHO05D008880 5.1e-15 84.7 54 75.9
Gohir.A13G090900 Gossypium hirsutum HOM05D007135 ORTHO05D008880 5.1e-15 84.7 50 82.0
Gohir.D13G096700 Gossypium hirsutum HOM05D007135 ORTHO05D008880 5.1e-15 84.7 50 82.0
Gorai.002G149200 Gossypium raimondii HOM05D007135 ORTHO05D008880 5.1e-15 84.7 50 82.0
Potri.009G124700 Populus trichocarpa HOM05D007135 ORTHO05D008880 5.1e-15 84.7 80 58.8
Potri.004G163100 Populus trichocarpa HOM05D007135 ORTHO05D008880 6.7e-15 84.3 84 57.1
RcHm_v2.0_Chr6g0267951 Rosa chinensis HOM05D007135 ORTHO05D008880 6.7e-15 84.3 84 58.3
Sabra09G0095700 Salix brachista HOM05D007135 ORTHO05D008880 6.7e-15 84.3 91 53.8
Cpa.g.sc150.16 Carica papaya HOM05D007135 ORTHO05D008880 8.8e-15 84.0 76 61.8
TWI75G0424 Tripterygium wilfordii HOM05D007135 ORTHO05D008880 8.8e-15 84.0 81 58.0
CiPaw.05G073400 Carya illinoinensis HOM05D007135 ORTHO05D008880 1.1e-14 83.6 73 63.0
FvH4_2g10470 Fragaria vesca HOM05D007135 ORTHO05D008880 1.1e-14 83.6 54 74.1
FAN24G2677 Fragaria x ananassa HOM05D007135 ORTHO05D008880 1.1e-14 83.6 54 74.1
PGR142G3962 Punica granatum HOM05D007135 ORTHO05D008880 1.1e-14 83.6 83 56.6
GSVIVG01024170001 Vitis vinifera HOM05D007135 ORTHO05D008880 1.1e-14 83.6 73 64.4
Duzib132G0527 Durio zibethinus HOM05D007135 ORTHO05D008880 1.5e-14 83.2 78 59.0
FAN15G3517 Fragaria x ananassa HOM05D007135 ORTHO05D008880 1.5e-14 83.2 80 57.5
SHI05613 Sapria himalayana HOM05D007135 ORTHO05D008880 1.5e-14 83.2 48 83.3
ATR0149G014 Amborella trichopoda HOM05D007135 ORTHO05D008880 2.0e-14 82.8 61 68.9
Cfa005113 Carpinus fangiana HOM05D007135 ORTHO05D008880 2.0e-14 82.8 77 58.4
Manes.11G081700 Manihot esculenta HOM05D007135 ORTHO05D008880 2.0e-14 82.8 78 57.7
MD10G1062900 Malus domestica HOM05D007135 ORTHO05D008880 2.5e-14 82.4 89 53.9
Prupe.8G083700 Prunus persica HOM05D007135 ORTHO05D008880 2.5e-14 82.4 89 56.2
DCAR_003685 Daucus carota HOM05D007135 ORTHO05D008880 3.3e-14 82.0 85 55.3
Actinidia02247 Actinidia chinensis HOM05D007135 ORTHO05D008880 5.7e-14 81.3 47 85.1
CSS0017994 Camellia sinensis var. sinensis HOM05D007135 ORTHO05D008880 5.7e-14 81.3 81 56.8
A04p16070 Brassica napus HOM05D007135 ORTHO05D008880 7.4e-14 80.9 72 62.5
BraA04t17247Z Brassica rapa HOM05D007135 ORTHO05D008880 7.4e-14 80.9 72 62.5
CANSAT11G0395 Cannabis sativa HOM05D007135 ORTHO05D008880 7.4e-14 80.9 46 84.8
BcaC02g08801 Brassica carinata HOM05D007135 ORTHO05D008880 9.7e-14 80.5 84 53.6
C04p50530 Brassica napus HOM05D007135 ORTHO05D008880 9.7e-14 80.5 84 53.6
BolC4t26651H Brassica oleracea HOM05D007135 ORTHO05D008880 9.7e-14 80.5 84 53.6
QL11p046458 Quercus lobata HOM05D007135 ORTHO05D008880 9.7e-14 80.5 84 54.8
C08p41660 Brassica napus HOM05D007135 ORTHO05D008880 1.3e-13 80.1 74 59.5
MBI05_g16268_MAGBIO Magnolia biondii HOM05D007135 ORTHO05D008880 1.7e-13 79.7 72 63.9
MD05G1055600 Malus domestica HOM05D007135 ORTHO05D008880 1.7e-13 79.7 45 84.4
unitig_60.g25867 Utricularia gibba HOM05D007135 ORTHO05D008880 1.7e-13 79.7 45 84.4
Atru.chr5.3145 Acer truncatum HOM05D007135 ORTHO05D008880 2.2e-13 79.3 80 57.5
FAN20G0703 Fragaria x ananassa HOM05D007135 ORTHO05D008880 2.2e-13 79.3 42 90.5
Solyc01g110400.2 Solanum lycopersicum HOM05D007135 ORTHO05D008880 2.2e-13 79.3 80 57.5
Sopen01g052550 Solanum pennellii HOM05D007135 ORTHO05D008880 2.2e-13 79.3 80 57.5
BolC8t51729H Brassica oleracea HOM05D007135 ORTHO05D008880 2.8e-13 79.0 81 55.6
Haze_02238 Corylus avellana HOM05D007135 ORTHO05D008880 2.8e-13 79.0 80 56.2
Peaxi162Scf00016g00015 Petunia axillaris HOM05D007135 ORTHO05D008880 2.8e-13 79.0 48 79.2
CAN.G170.101 Capsicum annuum HOM05D007135 ORTHO05D008880 3.7e-13 78.6 77 58.4
A09p58330 Brassica napus HOM05D007135 ORTHO05D008880 4.8e-13 78.2 81 55.6
AL4G10430 Arabidopsis lyrata HOM05D007135 ORTHO05D008880 6.3e-13 77.8 85 52.9
Duzib052G0169 Durio zibethinus HOM05D007135 ORTHO05D008880 6.3e-13 77.8 72 59.7
Manes.04G083200 Manihot esculenta HOM05D007135 ORTHO05D008880 6.3e-13 77.8 76 55.3
Nitab4.5_0005266g0060 Nicotiana tabacum HOM05D007135 ORTHO05D008880 6.3e-13 77.8 85 54.1
THA.LOC104824791 Tarenaya hassleriana HOM05D007135 ORTHO05D008880 6.3e-13 77.8 60 70.0
BraA09t41224Z Brassica rapa HOM05D007135 ORTHO05D008880 8.2e-13 77.4 82 54.9
Nitab4.5_0005932g0010 Nicotiana tabacum HOM05D007135 ORTHO05D008880 8.2e-13 77.4 78 55.1
Sabra04G0109400 Salix brachista HOM05D007135 ORTHO05D008880 8.2e-13 77.4 96 46.9
SalBow6G3736 Salvia bowleyana HOM05D007135 ORTHO05D008880 8.2e-13 77.4 81 53.1
Thhalv10000391m.g Eutrema salsugineum HOM05D007135 ORTHO05D008880 1.1e-12 77.0 88 52.3
BcaB08g34980 Brassica carinata HOM05D007135 ORTHO05D008880 1.4e-12 76.6 75 58.7
Carub.0004s0033 Capsella rubella HOM05D007135 ORTHO05D008880 1.8e-12 76.3 52 75.0
Sp4g00480 Schrenkiella parvula HOM05D007135 ORTHO05D008880 1.8e-12 76.3 76 59.2
AT2G21290 Arabidopsis thaliana HOM05D007135 ORTHO05D008880 2.4e-12 75.9 88 51.1
BcaC07g41158 Brassica carinata HOM05D007135 ORTHO05D008880 2.4e-12 75.9 82 53.7
EL10Ac9g21635 Beta vulgaris HOM05D007135 ORTHO05D008880 3.1e-12 75.5 84 52.4
Os09g0528100 Oryza sativa ssp. japonica HOM05D007135 ORTHO05D008880 3.1e-12 75.5 50 74.0
Aa31LG7G15200 Aethionema arabicum HOM05D007135 ORTHO05D008880 4.1e-12 75.1 49 75.5
CsaV3_7G000400 Cucumis sativus L. HOM05D007135 ORTHO05D008880 4.1e-12 75.1 80 52.5
HanXRQChr10g0294181 Helianthus annuus HOM05D007135 ORTHO05D008880 4.1e-12 75.1 80 52.5
Haze_15927 Corylus avellana HOM05D018783 ORTHO05D008880 5.3e-12 74.7 52 71.2
Migut.B00173 Erythranthe guttata HOM05D007135 ORTHO05D008880 9.1e-12 73.9 82 50.0
HPP92_008881 Vanilla planifolia HOM05D007135 ORTHO05D008880 9.1e-12 73.9 40 82.5
Cc02_g16900 Coffea canephora HOM05D007135 ORTHO05D008880 1.2e-11 73.6 45 77.8
AUR62010386 Chenopodium quinoa HOM05D007135 ORTHO05D008880 1.5e-11 73.2 83 48.2
AUR62016832 Chenopodium quinoa HOM05D007135 ORTHO05D008880 1.5e-11 73.2 83 48.2
CARHR112160 Cardamine hirsuta HOM05D007135 ORTHO05D008880 4.5e-11 71.6 88 50.0
Ah.01g018800 Amaranthus hybridus HOM05D007135 ORTHO05D008880 5.9e-11 71.2 62 54.8
Lsat_1_v5_gn_4_67341 Lactuca sativa HOM05D007135 ORTHO05D008880 5.9e-11 71.2 82 53.7
Zm00001eb103340 Zea mays HOM05D007135 ORTHO05D008880 1.0e-10 70.5 68 57.4
ECA234G2991 Erigeron canadensis HOM05D007135 ORTHO05D008880 1.3e-10 70.1 50 70.0
Sc08g0000910 Simmondsia chinensis HOM05D007135 ORTHO05D008880 1.7e-10 69.7 46 69.6
Haze_08383 Corylus avellana HOM05D007135 ORTHO05D008880 1.0e-07 60.5 41 75.6
RhsimUnG0003900 Rhododendron simsii HOM05D004431 ORTHO05D005053 3.9e-07 58.5 43 72.1
RhsimUnG0067300 Rhododendron simsii HOM05D004431 ORTHO05D005053 3.9e-07 58.5 43 72.1


User provided reference genes

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