Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.04G006001 Glycine max HOM05D004157 ORTHO05D004860 2.1e-64 248.8 123 100.0
Glyma.06G005700 Glycine max HOM05D004157 ORTHO05D004860 1.3e-26 123.2 66 87.9
Lj1g0011325 Lotus japonicus HOM05D004157 ORTHO05D004860 2.8e-24 115.5 66 81.8
Lalb_Chr11g0061251 Lupinus albus HOM05D004157 ORTHO05D004860 1.8e-23 112.8 66 78.8
Glyma.04G005900 Glycine max HOM05D004157 ORTHO05D004860 9.0e-23 110.5 66 78.8
Phvul.009G000600 Phaseolus vulgaris HOM05D004157 ORTHO05D004860 1.5e-22 109.8 66 77.3
TPR.G38481 Trifolium pratense HOM05D004157 ORTHO05D004860 2.0e-22 109.4 66 77.3
Glyma.06G005600 Glycine max HOM05D004157 ORTHO05D004860 2.6e-22 109.0 66 77.3
DCAR_003693 Daucus carota HOM05D004157 ORTHO05D004860 3.4e-22 108.6 70 71.4
arahy.Tifrunner.gnm1.ann1.391TM2 Arachis hypogaea HOM05D004157 ORTHO05D004860 5.9e-22 107.8 68 72.1
arahy.Tifrunner.gnm1.ann1.66CLCN Arachis hypogaea HOM05D004157 ORTHO05D004860 5.9e-22 107.8 68 72.1
Psat5g003520 Pisum sativum HOM05D004157 ORTHO05D004860 7.6e-22 107.5 66 75.8
PGR142G1140 Punica granatum HOM05D004157 ORTHO05D004860 1.0e-21 107.1 66 71.2
Ca_15317_v3 Cicer arietinum L. HOM05D000600 ORTHO05D004860 1.7e-21 106.3 66 77.3
PGR042G1356 Punica granatum HOM05D004157 ORTHO05D004860 1.7e-21 106.3 66 72.7
QL11p047455 Quercus lobata HOM05D004157 ORTHO05D004860 2.9e-21 105.5 66 72.7
VMungo1309G1201 Vigna mungo HOM05D004157 ORTHO05D004860 2.9e-21 105.5 66 74.2
Eucgr.L03396 Eucalyptus grandis HOM05D004157 ORTHO05D004860 6.5e-21 104.4 66 71.2
Potri.004G167200 Populus trichocarpa HOM05D004157 ORTHO05D004860 6.5e-21 104.4 67 71.6
FvH4_2g02150 Fragaria vesca HOM05D004157 ORTHO05D004860 1.1e-20 103.6 66 69.7
FAN24G0875 Fragaria x ananassa HOM05D004157 ORTHO05D004860 1.1e-20 103.6 66 69.7
Ciclev10029225m.g Citrus clementina HOM05D004157 ORTHO05D004860 1.4e-20 103.2 70 67.1
PSO541G4423 Papaver somniferum HOM05D004157 ORTHO05D004860 1.4e-20 103.2 66 69.7
PSO675G3214 Papaver somniferum HOM05D004157 ORTHO05D004860 1.4e-20 103.2 66 69.7
Actinidia27843 Actinidia chinensis HOM05D004157 ORTHO05D004860 1.9e-20 102.8 66 71.2
Eucgr.G01749 Eucalyptus grandis HOM05D004157 ORTHO05D004860 1.9e-20 102.8 84 61.9
Medtr3g117700 Medicago truncatula HOM05D004157 ORTHO05D004860 1.9e-20 102.8 66 71.2
Potri.009G128700 Populus trichocarpa HOM05D004157 ORTHO05D004860 1.9e-20 102.8 67 70.1
Lj9A389T64 Lonicera japonica HOM05D004157 ORTHO05D004860 2.5e-20 102.4 66 68.2
Nn5g30153 Nelumbo nucifera HOM05D004157 ORTHO05D004860 2.5e-20 102.4 66 69.7
Sabra09G0098500 Salix brachista HOM05D004157 ORTHO05D004860 3.2e-20 102.1 67 70.1
vmacro17385 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 3.2e-20 102.1 66 74.2
FAN20G1131 Fragaria x ananassa HOM05D004157 ORTHO05D004860 4.2e-20 101.7 66 68.2
HanXRQChr10g0294891 Helianthus annuus HOM05D004157 ORTHO05D004860 4.2e-20 101.7 66 69.7
Manes.04G078800 Manihot esculenta HOM05D004157 ORTHO05D004860 4.2e-20 101.7 66 68.2
TWI79G0156 Tripterygium wilfordii HOM05D004157 ORTHO05D004860 4.2e-20 101.7 66 72.7
RcHm_v2.0_Chr6g0245651 Rosa chinensis HOM05D004157 ORTHO05D004860 5.5e-20 101.3 66 66.7
SHI05673 Sapria himalayana HOM05D004157 ORTHO05D004860 5.5e-20 101.3 67 68.7
HPP92_002547 Vanilla planifolia HOM05D004157 ORTHO05D004860 5.5e-20 101.3 66 66.7
CiPaw.06G125600 Carya illinoinensis HOM05D000447 ORTHO05D000315 7.2e-20 100.9 66 69.7
Actinidia32087 Actinidia chinensis HOM05D004157 ORTHO05D004860 9.3e-20 100.5 66 69.7
Aqoxy5G01458 Aquilegia oxysepala HOM05D004157 ORTHO05D004860 9.3e-20 100.5 66 69.7
Lsat_1_v5_gn_3_45521 Lactuca sativa HOM05D004157 ORTHO05D004860 9.3e-20 100.5 66 68.2
Prupe.8G159500 Prunus persica HOM05D004157 ORTHO05D004860 9.3e-20 100.5 66 66.7
vmacro02241 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 9.3e-20 100.5 66 68.2
vmacro22690 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 9.3e-20 100.5 66 68.2
Eucgr.G01748 Eucalyptus grandis HOM05D004157 ORTHO05D004860 1.2e-19 100.1 66 71.2
ECA234G4736 Erigeron canadensis HOM05D004157 ORTHO05D004860 1.6e-19 99.8 66 68.2
TWI75G1232 Tripterygium wilfordii HOM05D004157 ORTHO05D004860 1.6e-19 99.8 66 69.7
VMungo1309G1253 Vigna mungo HOM05D004157 ORTHO05D004860 1.6e-19 99.8 66 72.7
Atru.chr5.3210 Acer truncatum HOM05D004157 ORTHO05D004860 2.1e-19 99.4 66 68.2
Cpa.g.sc37.201 Carica papaya HOM05D004157 ORTHO05D004860 2.1e-19 99.4 66 66.7
Dinv04975 Davidia involucrata HOM05D000600 ORTHO05D000432 2.7e-19 99.0 66 68.2
MD10G1116600 Malus domestica HOM05D004157 ORTHO05D004860 2.7e-19 99.0 66 65.2
PGR042G3985 Punica granatum HOM05D004157 ORTHO05D004860 2.7e-19 99.0 66 68.2
CANSAT25G0852 Cannabis sativa HOM05D004157 ORTHO05D004860 3.6e-19 98.6 66 68.2
TAR381G0601 Trochodendron aralioides HOM05D004157 ORTHO05D004860 4.6e-19 98.2 66 66.7
Gorai.005G251900 Gossypium raimondii HOM05D004157 ORTHO05D004860 6.1e-19 97.8 66 65.2
Prupe.8G159400 Prunus persica HOM05D004157 ORTHO05D004860 6.1e-19 97.8 66 65.2
Sc18g0006720 Simmondsia chinensis HOM05D004157 ORTHO05D004860 7.9e-19 97.4 66 66.7
Duzib052G0280 Durio zibethinus HOM05D004157 ORTHO05D004860 1.0e-18 97.1 66 63.6
Lj5A185T60 Lonicera japonica HOM05D004157 ORTHO05D004860 1.0e-18 97.1 67 61.2
Thecc.02G068100 Theobroma cacao HOM05D004157 ORTHO05D004860 1.0e-18 97.1 66 65.2
ATR0089G001 Amborella trichopoda HOM05D004157 ORTHO05D004860 1.4e-18 96.7 66 63.6
ATR0095G001 Amborella trichopoda HOM05D004157 ORTHO05D004860 1.4e-18 96.7 66 63.6
MSTRG.5432 Avicennia marina HOM05D004157 ORTHO05D004860 1.4e-18 96.7 66 65.2
Ah.01g009470 Amaranthus hybridus HOM05D004157 ORTHO05D004860 1.8e-18 96.3 95 53.7
Cfa005173 Carpinus fangiana HOM05D004157 ORTHO05D004860 1.8e-18 96.3 66 60.6
Duzib132G0743 Durio zibethinus HOM05D004157 ORTHO05D004860 1.8e-18 96.3 67 62.7
Gohir.A03G202800 Gossypium hirsutum HOM05D004157 ORTHO05D004860 1.8e-18 96.3 66 63.6
Gohir.D02G224100 Gossypium hirsutum HOM05D004157 ORTHO05D004860 1.8e-18 96.3 66 63.6
GSVIVG01024109001 Vitis vinifera HOM05D004157 ORTHO05D004860 1.8e-18 96.3 66 63.6
MELO3C013382.2 Cucumis melo HOM05D004157 ORTHO05D004860 3.9e-18 95.1 66 65.2
Sed0001494 Sechium edule HOM05D000447 ORTHO05D000315 5.1e-18 94.7 66 66.7
Sed0017382 Sechium edule HOM05D004157 ORTHO05D004860 5.1e-18 94.7 66 66.7
Lsat_1_v5_gn_1_62181 Lactuca sativa HOM05D004157 ORTHO05D004860 6.7e-18 94.4 67 59.7
Os06g0112200 Oryza sativa ssp. japonica HOM05D004157 ORTHO05D004860 8.8e-18 94.0 66 59.1
PSO541G6022 Papaver somniferum HOM05D004157 ORTHO05D004860 1.5e-17 93.2 66 62.1
ClCG02G004360 Citrullus lanatus HOM05D000447 ORTHO05D000315 1.9e-17 92.8 66 63.6
HanXRQChr11g0346651 Helianthus annuus HOM05D004157 ORTHO05D004860 1.9e-17 92.8 67 59.7
Hma1.2p1_1385F.1_g279670 Hydrangea macrophylla HOM05D004157 ORTHO05D004860 1.9e-17 92.8 64 65.6
Oeu055643.1 Olea europaea HOM05D004157 ORTHO05D004860 2.5e-17 92.4 82 57.3
Oeu002957.1 Olea europaea HOM05D004157 ORTHO05D004860 3.3e-17 92.0 66 65.2
Cc02_g16620 Coffea canephora HOM05D004157 ORTHO05D004860 4.3e-17 91.7 66 62.1
THA.LOC104807783 Tarenaya hassleriana HOM05D004157 ORTHO05D004860 4.3e-17 91.7 67 58.2
DCAR_028937 Daucus carota HOM05D004157 ORTHO05D004860 5.7e-17 91.3 66 63.6
Migut.I00211 Erythranthe guttata HOM05D004157 ORTHO05D004860 5.7e-17 91.3 66 62.1
PSO675G5417 Papaver somniferum HOM05D004157 ORTHO05D004860 5.7e-17 91.3 66 60.6
Hund00051 Selenicereus undatus HOM05D004157 ORTHO05D004860 7.4e-17 90.9 66 63.6
unitig_0.g2353 Utricularia gibba HOM05D004157 ORTHO05D004860 7.4e-17 90.9 66 62.1
EL10Ac9g21458 Beta vulgaris HOM05D004157 ORTHO05D004860 9.7e-17 90.5 67 61.2
Phvul.009G000700 Phaseolus vulgaris HOM05D004157 ORTHO05D004860 9.7e-17 90.5 84 57.1
Aqoxy2G00577 Aquilegia oxysepala HOM05D004157 ORTHO05D004860 1.3e-16 90.1 66 62.1
SGA_v2.0_scaffold80G25867 Striga asiatica HOM05D004157 ORTHO05D004860 1.3e-16 90.1 66 62.1
Actinidia00586 Actinidia chinensis HOM05D004157 ORTHO05D004860 1.7e-16 89.7 67 64.2
Eucgr.G01750 Eucalyptus grandis HOM05D004157 ORTHO05D004860 1.7e-16 89.7 65 63.1
Peaxi162Scf00362g01054 Petunia axillaris HOM05D004157 ORTHO05D004860 2.2e-16 89.4 65 60.0
CsaV3_7G000760 Cucumis sativus L. HOM05D004157 ORTHO05D004860 2.8e-16 89.0 66 62.1
Thhalv10026821m.g Eutrema salsugineum HOM05D004157 ORTHO05D004860 4.8e-16 88.2 66 60.6
SEGI_37242 Sequoiadendron giganteum HOM05D004157 ORTHO05D004860 6.3e-16 87.8 67 56.7
SalBow3G3146 Salvia bowleyana HOM05D004157 ORTHO05D004860 1.1e-15 87.0 66 62.1
Sp7g32610 Schrenkiella parvula HOM05D004157 ORTHO05D004860 1.1e-15 87.0 66 59.1
Solyc01g111060.4 Solanum lycopersicum HOM05D004157 ORTHO05D004860 1.4e-15 86.7 65 60.0
Sopen01g053120 Solanum pennellii HOM05D004157 ORTHO05D004860 1.4e-15 86.7 65 60.0
AL7G16370 Arabidopsis lyrata HOM05D004157 ORTHO05D004860 2.4e-15 85.9 83 50.6
PGSC0003DMG400001636 Solanum tuberosum HOM05D004157 ORTHO05D004860 2.4e-15 85.9 65 60.0
unitig_21.g20017 Utricularia gibba HOM05D004157 ORTHO05D004860 3.1e-15 85.5 66 57.6
THA.LOC104819635 Tarenaya hassleriana HOM05D004157 ORTHO05D004860 5.3e-15 84.7 66 56.1
Thhalv10025990m.g Eutrema salsugineum HOM05D004157 ORTHO05D004860 9.1e-15 84.0 65 56.9
PGR042G2276 Punica granatum HOM05D004157 ORTHO05D004860 9.1e-15 84.0 68 57.4
AUR62010110 Chenopodium quinoa HOM05D004157 ORTHO05D004860 1.2e-14 83.6 80 52.5
Pp3c14_1450 Physcomitrium patens HOM05D004157 ORTHO05D004860 1.2e-14 83.6 66 60.6
CAN.G588.18 Capsicum annuum HOM05D004157 ORTHO05D004860 1.5e-14 83.2 65 58.5
Nitab4.5_0000283g0220 Nicotiana tabacum HOM05D004157 ORTHO05D004860 1.5e-14 83.2 65 56.9
Rhsim11G0186900 Rhododendron simsii HOM05D004157 ORTHO05D004860 1.5e-14 83.2 60 60.0
AL7G10670 Arabidopsis lyrata HOM05D004157 ORTHO05D004860 2.0e-14 82.8 65 55.4
AT4G38800 Arabidopsis thaliana HOM05D004157 ORTHO05D004860 2.0e-14 82.8 65 55.4
COL.COLO4_17245 Corchorus olitorius HOM05D004157 ORTHO05D004860 2.0e-14 82.8 103 43.7
Zm00001eb036610 Zea mays HOM05D004157 ORTHO05D004860 2.0e-14 82.8 82 48.8
BcaC01g00866 Brassica carinata HOM05D004157 ORTHO05D004860 2.6e-14 82.4 66 57.6
A08p16520 Brassica napus HOM05D004157 ORTHO05D004860 2.6e-14 82.4 66 57.6
C03p85360 Brassica napus HOM05D004157 ORTHO05D004860 2.6e-14 82.4 66 57.6
BolC3t20826H Brassica oleracea HOM05D004157 ORTHO05D004860 2.6e-14 82.4 66 57.6
BraA08t33620Z Brassica rapa HOM05D004157 ORTHO05D004860 2.6e-14 82.4 66 57.6
Carub.0007s0065 Capsella rubella HOM05D004157 ORTHO05D004860 3.4e-14 82.0 65 53.8
AT4G34840 Arabidopsis thaliana HOM05D004157 ORTHO05D004860 4.5e-14 81.6 74 52.7
SMO147G0350 Selaginella moellendorffii HOM05D004157 ORTHO05D004860 4.5e-14 81.6 75 53.3
Carub.0007s0546 Capsella rubella HOM05D004157 ORTHO05D004860 1.0e-13 80.5 123 39.0
Zm00001eb175180 Zea mays HOM05D004157 ORTHO05D004860 1.0e-13 80.5 97 42.3
Pp3c1_20870 Physcomitrium patens HOM05D004157 ORTHO05D004860 1.7e-13 79.7 66 54.5
Pp3c26_5320 Physcomitrium patens HOM05D004157 ORTHO05D004860 1.7e-13 79.7 66 59.1
CARHR243130 Cardamine hirsuta HOM05D004157 ORTHO05D004860 2.2e-13 79.3 66 56.1
BcaB03g11807 Brassica carinata HOM05D004157 ORTHO05D004860 2.9e-13 79.0 66 54.5
Aa31LG2G15700 Aethionema arabicum HOM05D004157 ORTHO05D004860 1.1e-12 77.0 66 56.1
BcaC01g00256 Brassica carinata HOM05D004157 ORTHO05D004860 3.2e-12 75.5 65 50.8
CARHR247930 Cardamine hirsuta HOM05D004157 ORTHO05D004860 4.2e-12 75.1 65 49.2
BcaB03g12226 Brassica carinata HOM05D004157 ORTHO05D004860 5.5e-12 74.7 65 50.8
Mapoly0026s0093 Marchantia polymorpha HOM05D004157 ORTHO05D004860 7.2e-12 74.3 66 48.5
Rhsim01G0041000 Rhododendron simsii HOM05D004157 ORTHO05D004860 7.2e-12 74.3 71 56.3
Aa31LG6G16410 Aethionema arabicum HOM05D004157 ORTHO05D004860 8.8e-10 67.4 99 37.4
A08p24000 Brassica napus HOM05D004157 ORTHO05D004860 1.5e-09 66.6 65 47.7
C03p77330 Brassica napus HOM05D004157 ORTHO05D004860 1.5e-09 66.6 65 47.7
BraA08t34357Z Brassica rapa HOM05D004157 ORTHO05D004860 1.5e-09 66.6 78 42.3
BolC3t19986H Brassica oleracea HOM05D004157 ORTHO05D004860 2.0e-09 66.2 79 41.8
Cre03.g162550 Chlamydomonas reinhardtii HOM05D004157 ORTHO05D004860 3.3e-09 65.5 61 47.5
SGA_v2.0_scaffold32G13240 Striga asiatica HOM05D004157 ORTHO05D004860 2.2e-08 62.8 66 53.0
vmacro22693 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 2.2e-08 62.8 135 31.9
Rhsim05G0063700 Rhododendron simsii HOM05D004157 ORTHO05D004860 1.4e-07 60.1 37 75.7
MCO15G557 Micromonas commoda HOM05D004157 ORTHO05D004860 5.3e-07 58.2 66 43.9
CDE02G2528 Ceratophyllum demersum HOM05D004157 ORTHO05D004860 7.0e-07 57.8 33 69.7
Rhsim05G0183600 Rhododendron simsii HOM05D000190 ORTHO05D000113 7.0e-07 57.8 109 35.8
Rhsim11G0185600 Rhododendron simsii HOM05D004157 ORTHO05D004860 9.1e-07 57.4 40 67.5
Sp7g37020 Schrenkiella parvula HOM05D004157 ORTHO05D004860 1.5e-06 56.6 38 63.2
AUR62013103 Chenopodium quinoa HOM05D004157 ORTHO05D004860 3.4e-06 55.5 37 67.6
AagrBONN_evm.TU.Sc2ySwM_368.2286 Anthoceros agrestis HOM05D004157 ORTHO05D004860 7.7e-06 54.3 66 39.4


User provided reference genes

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