Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.03G260100 Glycine max HOM05D007943 ORTHO05D010047 1.0e-57 226.5 111 100.0
Glyma.19G259000 Glycine max HOM05D007943 ORTHO05D010047 1.8e-38 162.5 106 81.1
Phvul.006G116500 Phaseolus vulgaris HOM05D007943 ORTHO05D010047 8.1e-31 137.1 108 63.0
TPR.G4732 Trifolium pratense HOM05D007943 ORTHO05D010047 2.1e-18 95.9 91 53.8
Lalb_Chr02g0157681 Lupinus albus HOM05D007943 ORTHO05D010047 1.8e-17 92.8 99 54.5
Glyma.16G020300 Glycine max HOM05D007943 ORTHO05D010047 3.0e-17 92.0 80 57.5
Glyma.07G051200 Glycine max HOM05D007943 ORTHO05D010047 5.1e-17 91.3 100 50.0
arahy.Tifrunner.gnm1.ann1.FJCJ23 Arachis hypogaea HOM05D007943 ORTHO05D010047 1.9e-16 89.4 104 48.1
Lalb_Chr10g0100821 Lupinus albus HOM05D007943 ORTHO05D010047 6.9e-14 80.9 61 60.7
Phvul.010G118200 Phaseolus vulgaris HOM05D007943 ORTHO05D010047 6.9e-14 80.9 59 57.6
Medtr8g024630 Medicago truncatula HOM05D007943 ORTHO05D010047 1.5e-13 79.7 99 47.5
TPR.G25267 Trifolium pratense HOM05D007943 ORTHO05D010047 1.5e-13 79.7 80 50.0
Psat4g217240 Pisum sativum HOM05D007943 ORTHO05D010047 2.0e-13 79.3 80 52.5
Hund16743 Selenicereus undatus HOM05D007943 ORTHO05D010047 1.3e-12 76.6 100 39.0
Prupe.2G195800 Prunus persica HOM05D007943 ORTHO05D010047 5.0e-12 74.7 85 44.7
AL1G11360 Arabidopsis lyrata HOM05D007943 ORTHO05D010047 8.5e-12 73.9 63 50.8
FAN10G0207 Fragaria x ananassa HOM05D007943 ORTHO05D010047 8.5e-12 73.9 68 47.1
Carub.0001s0107 Capsella rubella HOM05D007943 ORTHO05D010047 1.1e-11 73.6 51 58.8
MD01G1087200 Malus domestica HOM05D007943 ORTHO05D010047 1.9e-11 72.8 56 55.4
MD07G1157400 Malus domestica HOM05D007943 ORTHO05D010047 3.2e-11 72.0 54 57.4
FAN03G2903 Fragaria x ananassa HOM05D007943 ORTHO05D010047 5.5e-11 71.2 54 51.9
FvH4_7g17420 Fragaria vesca HOM05D007943 ORTHO05D010047 9.4e-11 70.5 85 38.8
FAN01G2944 Fragaria x ananassa HOM05D007943 ORTHO05D010047 9.4e-11 70.5 54 51.9
FAN06G1823 Fragaria x ananassa HOM05D007943 ORTHO05D010047 9.4e-11 70.5 85 38.8
Lj3g0013373 Lotus japonicus HOM05D007943 ORTHO05D010047 9.4e-11 70.5 58 55.2
QL08p046777 Quercus lobata HOM05D007943 ORTHO05D010047 9.4e-11 70.5 70 45.7
FAN10G1708 Fragaria x ananassa HOM05D007943 ORTHO05D010047 1.2e-10 70.1 54 51.9
Potri.014G104100 Populus trichocarpa HOM05D007943 ORTHO05D010047 1.2e-10 70.1 76 40.8
RcHm_v2.0_Chr1g0360861 Rosa chinensis HOM05D007943 ORTHO05D010047 1.2e-10 70.1 68 44.1
Ciclev10022962m.g Citrus clementina HOM05D007943 ORTHO05D010047 2.1e-10 69.3 82 40.2
Cfa003750 Carpinus fangiana HOM05D007943 ORTHO05D010047 2.7e-10 68.9 76 43.4
CiPaw.01G081100 Carya illinoinensis HOM05D007943 ORTHO05D010047 2.7e-10 68.9 85 37.6
CSS0046577 Camellia sinensis var. sinensis HOM05D007943 ORTHO05D010047 4.6e-10 68.2 84 42.9
A09p68930 Brassica napus HOM05D007943 ORTHO05D010047 7.9e-10 67.4 61 45.9
Sc23g0001870 Simmondsia chinensis HOM05D007943 ORTHO05D010047 1.0e-09 67.0 100 39.0
Duzib133G1419 Durio zibethinus HOM05D007943 ORTHO05D010047 1.4e-09 66.6 52 51.9
BolC8t52866H Brassica oleracea HOM05D007943 ORTHO05D010047 1.8e-09 66.2 63 44.4
Haze_15717 Corylus avellana HOM05D007943 ORTHO05D010047 2.3e-09 65.9 52 51.9
Atru.chr5.749 Acer truncatum HOM05D007943 ORTHO05D010047 3.0e-09 65.5 62 43.5
GSVIVG01027420001 Vitis vinifera HOM05D007943 ORTHO05D010047 3.0e-09 65.5 63 44.4
Gohir.D07G139100 Gossypium hirsutum HOM05D007943 ORTHO05D010047 3.9e-09 65.1 60 46.7
Gorai.001G151200 Gossypium raimondii HOM05D007943 ORTHO05D010047 3.9e-09 65.1 60 46.7
Thecc.01G335100 Theobroma cacao HOM05D007943 ORTHO05D010047 3.9e-09 65.1 71 40.8
Gohir.A11G100000 Gossypium hirsutum HOM05D007943 ORTHO05D010047 5.1e-09 64.7 51 49.0
Gohir.D11G104700 Gossypium hirsutum HOM05D007943 ORTHO05D010047 6.7e-09 64.3 70 41.4
Gorai.007G112000 Gossypium raimondii HOM05D007943 ORTHO05D010047 6.7e-09 64.3 70 41.4
Manes.01G241300 Manihot esculenta HOM05D007943 ORTHO05D010047 1.1e-08 63.5 61 44.3
Sabra02G0135900 Salix brachista HOM05D007943 ORTHO05D010047 1.1e-08 63.5 62 45.2
Gohir.A07G134500 Gossypium hirsutum HOM05D007943 ORTHO05D010047 1.9e-08 62.8 60 45.0
TAR629G3284 Trochodendron aralioides HOM05D007943 ORTHO05D010047 1.9e-08 62.8 51 52.9
AUR62004549 Chenopodium quinoa HOM05D007943 ORTHO05D010047 3.3e-08 62.0 66 43.9
Manes.05G017800 Manihot esculenta HOM05D007943 ORTHO05D010047 7.4e-08 60.8 52 42.3
Oeu042966.1 Olea europaea HOM05D007943 ORTHO05D010047 1.3e-07 60.1 56 48.2
COL.COLO4_06217 Corchorus olitorius HOM05D007943 ORTHO05D010047 2.8e-07 58.9 52 46.2
DCAR_006654 Daucus carota HOM05D007943 ORTHO05D010047 8.2e-07 57.4 69 39.1
Sed0008180 Sechium edule HOM05D007943 ORTHO05D010047 8.2e-07 57.4 54 40.7
TAR375G0647 Trochodendron aralioides HOM05D007943 ORTHO05D010047 8.2e-07 57.4 53 52.8
Potri.002G177700 Populus trichocarpa HOM05D007943 ORTHO05D010047 1.4e-06 56.6 56 41.1
CsaV3_3G007690 Cucumis sativus L. HOM05D007943 ORTHO05D010047 1.8e-06 56.2 63 36.5
MELO3C005988.2 Cucumis melo HOM05D007943 ORTHO05D010047 2.4e-06 55.8 63 36.5
CsaV3_3G007710 Cucumis sativus L. HOM05D007943 ORTHO05D010047 2.4e-06 55.8 102 28.4
CSS0001750 Camellia sinensis var. sinensis HOM05D007943 ORTHO05D010047 5.3e-06 54.7 57 40.4
Nn3g18838 Nelumbo nucifera HOM05D007943 ORTHO05D010047 5.3e-06 54.7 73 39.7


User provided reference genes

Program Settings