Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.03G255300 Glycine max HOM05D005178 ORTHO05D006123 7.3e-101 370.9 242 100.0
Glyma.19G252900 Glycine max HOM05D005178 ORTHO05D006123 3.9e-86 322.0 234 91.9
VMungo0540G0638 Vigna mungo HOM05D005178 ORTHO05D006123 1.3e-62 243.8 167 68.3
Phvul.006G110000 Phaseolus vulgaris HOM05D005178 ORTHO05D006123 3.9e-62 242.3 168 69.0
Lj1g0025938 Lotus japonicus HOM05D005178 ORTHO05D006123 1.4e-56 223.8 237 55.7
Medtr7g116930 Medicago truncatula HOM05D005178 ORTHO05D006123 2.5e-53 213.0 241 57.3
Ca_09491_v3 Cicer arietinum L. HOM05D005178 ORTHO05D006123 2.6e-50 203.0 235 56.6
TPR.G4707 Trifolium pratense HOM05D005178 ORTHO05D006123 3.8e-49 199.1 169 59.2
Lalb_Chr04g0261721 Lupinus albus HOM05D005178 ORTHO05D006123 1.2e-42 177.6 235 58.3
CANSAT56G4005 Cannabis sativa HOM05D005178 ORTHO05D006123 2.9e-33 146.4 237 44.7
Psat3g003480 Pisum sativum HOM05D005178 ORTHO05D006123 1.9e-32 143.7 127 52.0
Duzib138G0021 Durio zibethinus HOM05D005178 ORTHO05D006123 3.2e-32 142.9 244 46.3
Gohir.D11G099200 Gossypium hirsutum HOM05D005178 ORTHO05D006123 5.5e-32 142.1 244 40.2
Nn7g37376 Nelumbo nucifera HOM05D005178 ORTHO05D006123 5.5e-32 142.1 238 34.9
Thecc.01G348100 Theobroma cacao HOM05D005178 ORTHO05D006123 5.5e-32 142.1 244 45.9
Gorai.007G105400 Gossypium raimondii HOM05D005178 ORTHO05D006123 9.4e-32 141.4 244 40.2
Dinv43890 Davidia involucrata HOM05D005178 ORTHO05D006123 1.2e-31 141.0 244 45.9
Duzib133G0451 Durio zibethinus HOM05D005178 ORTHO05D006123 1.2e-31 141.0 244 45.5
Gohir.A11G094200 Gossypium hirsutum HOM05D005178 ORTHO05D006123 1.2e-31 141.0 244 40.2
Nn1g01788 Nelumbo nucifera HOM05D005178 ORTHO05D006123 1.6e-31 140.6 233 33.0
CiPaw.01G071600 Carya illinoinensis HOM05D005178 ORTHO05D006123 1.8e-30 137.1 243 48.1
Gohir.D12G113800 Gossypium hirsutum HOM05D005178 ORTHO05D006123 1.8e-30 137.1 245 32.7
Atru.chr5.616 Acer truncatum HOM05D005178 ORTHO05D006123 2.0e-29 133.7 242 44.6
Dinv32550 Davidia involucrata HOM05D005178 ORTHO05D006123 4.4e-29 132.5 244 41.0
Haze_15614 Corylus avellana HOM05D005178 ORTHO05D006123 5.7e-29 132.1 235 41.7
Gohir.D08G147400 Gossypium hirsutum HOM05D005178 ORTHO05D006123 9.7e-29 131.3 170 38.2
Gorai.008G123300 Gossypium raimondii HOM05D005178 ORTHO05D006123 1.3e-28 131.0 245 31.8
Gohir.A08G126100 Gossypium hirsutum HOM05D005178 ORTHO05D006123 2.2e-28 130.2 170 37.1
Hma1.2p1_2972F.1_g331100 Hydrangea macrophylla HOM05D005178 ORTHO05D006123 2.2e-28 130.2 168 35.7
Gorai.004G153000 Gossypium raimondii HOM05D005178 ORTHO05D006123 3.7e-28 129.4 170 37.6
Hma1.2p1_0384F.1_g141000 Hydrangea macrophylla HOM05D005178 ORTHO05D006123 3.7e-28 129.4 168 35.1
PGR042G2135 Punica granatum HOM05D005178 ORTHO05D006123 3.7e-28 129.4 251 43.0
QL04p059571 Quercus lobata HOM05D005178 ORTHO05D006123 1.1e-27 127.9 250 44.0
Rhsim07G0007300 Rhododendron simsii HOM05D005178 ORTHO05D006123 1.8e-27 127.1 247 41.3
MBI06_g02230_MAGBIO Magnolia biondii HOM05D005178 ORTHO05D006123 3.1e-27 126.3 236 45.3
Potri.014G094400 Populus trichocarpa HOM05D005178 ORTHO05D006123 7.0e-27 125.2 236 35.6
CsaV3_3G008390 Cucumis sativus L. HOM05D000050 ORTHO05D000380 1.6e-26 124.0 246 38.6
Potri.002G167300 Populus trichocarpa HOM05D005178 ORTHO05D006123 2.7e-26 123.2 235 37.9
MELO3C006056.2 Cucumis melo HOM05D005178 ORTHO05D006123 1.3e-25 120.9 246 40.2
ClCG08G003840 Citrullus lanatus HOM05D005178 ORTHO05D006123 3.8e-25 119.4 168 38.1
MELO3C029922.2 Cucumis melo HOM05D005178 ORTHO05D006123 8.5e-25 118.2 169 37.3
RcHm_v2.0_Chr1g0358651 Rosa chinensis HOM05D005178 ORTHO05D006123 1.1e-24 117.9 244 36.9
PSO384G3117 Papaver somniferum HOM05D005178 ORTHO05D006123 3.2e-24 116.3 168 36.3
Lj7A504T56 Lonicera japonica HOM05D005178 ORTHO05D006123 4.2e-24 115.9 231 41.6
Sabra02G0144400 Salix brachista HOM05D005178 ORTHO05D006123 4.2e-24 115.9 235 34.0
FvH4_7g15840 Fragaria vesca HOM05D005178 ORTHO05D006123 7.2e-24 115.2 244 32.4
FAN06G0749 Fragaria x ananassa HOM05D005178 ORTHO05D006123 9.4e-24 114.8 244 32.4
Prupe.2G183000 Prunus persica HOM05D005178 ORTHO05D006123 9.4e-24 114.8 242 43.0
BcaB01g03231 Brassica carinata HOM05D005178 ORTHO05D006123 1.6e-23 114.0 170 36.5
BcaC01g05085 Brassica carinata HOM05D005178 ORTHO05D006123 1.6e-23 114.0 170 36.5
Aa31LG1G27670 Aethionema arabicum HOM05D005178 ORTHO05D006123 2.1e-23 113.6 172 37.2
Manes.05G026400 Manihot esculenta HOM05D005178 ORTHO05D006123 2.1e-23 113.6 246 30.1
CsaV3_6G003970 Cucumis sativus L. HOM05D005178 ORTHO05D006123 2.7e-23 113.2 168 36.3
PSO135G0875 Papaver somniferum HOM05D005178 ORTHO05D006123 3.6e-23 112.8 168 35.7
Sed0008780 Sechium edule HOM05D005178 ORTHO05D006123 3.6e-23 112.8 237 39.7
A05p01500 Brassica napus HOM05D005178 ORTHO05D006123 4.7e-23 112.5 170 35.3
C03p30470 Brassica napus HOM05D005178 ORTHO05D006123 4.7e-23 112.5 170 37.1
BolC3t15395H Brassica oleracea HOM05D005178 ORTHO05D006123 4.7e-23 112.5 170 37.1
BraA05t19146Z Brassica rapa HOM05D005178 ORTHO05D006123 4.7e-23 112.5 170 35.3
Sopen10g005540 Solanum pennellii HOM05D005178 ORTHO05D006123 4.7e-23 112.5 168 35.7
AL4G45600 Arabidopsis lyrata HOM05D005178 ORTHO05D006123 6.1e-23 112.1 243 35.4
Solyc10g011750.3 Solanum lycopersicum HOM05D005178 ORTHO05D006123 6.1e-23 112.1 168 35.7
Nitab4.5_0005619g0010 Nicotiana tabacum HOM05D005178 ORTHO05D006123 8.0e-23 111.7 166 35.5
Peaxi162Scf00403g00074 Petunia axillaris HOM05D005178 ORTHO05D006123 8.0e-23 111.7 168 35.1
A03p25540 Brassica napus HOM05D005178 ORTHO05D006123 1.0e-22 111.3 170 36.5
BraA03t11771Z Brassica rapa HOM05D005178 ORTHO05D006123 1.0e-22 111.3 170 36.5
BcaC02g12521 Brassica carinata HOM05D005178 ORTHO05D006123 1.4e-22 110.9 170 35.3
C04p01700 Brassica napus HOM05D005178 ORTHO05D006123 1.4e-22 110.9 170 35.3
BolC4t21822H Brassica oleracea HOM05D005178 ORTHO05D006123 1.4e-22 110.9 170 35.3
Nitab4.5_0002262g0140 Nicotiana tabacum HOM05D005178 ORTHO05D006123 1.4e-22 110.9 168 34.5
FAN06G4203 Fragaria x ananassa HOM05D005178 ORTHO05D006123 3.0e-22 109.8 243 31.7
Thhalv10001596m.g Eutrema salsugineum HOM05D005178 ORTHO05D006123 4.0e-22 109.4 246 34.1
CiPaw.02G038200 Carya illinoinensis HOM05D005178 ORTHO05D006123 6.8e-22 108.6 232 38.4
FAN10G2759 Fragaria x ananassa HOM05D005178 ORTHO05D006123 6.8e-22 108.6 244 32.0
PGSC0003DMG400019400 Solanum tuberosum HOM05D005178 ORTHO05D006123 6.8e-22 108.6 168 35.1
FAN03G0560 Fragaria x ananassa HOM05D005178 ORTHO05D006123 8.8e-22 108.2 244 32.8
Nitab4.5_0003779g0030 Nicotiana tabacum HOM05D005178 ORTHO05D006123 1.2e-21 107.8 166 33.7
AT2G46300 Arabidopsis thaliana HOM05D005178 ORTHO05D006123 1.5e-21 107.5 242 36.0
Carub.0004s2900 Capsella rubella HOM05D005178 ORTHO05D006123 1.5e-21 107.5 244 40.6
FAN10G1950 Fragaria x ananassa HOM05D005178 ORTHO05D006123 1.5e-21 107.5 243 31.7
BcaC01g05079 Brassica carinata HOM05D005178 ORTHO05D006123 2.0e-21 107.1 173 36.4
Ciclev10021837m.g Citrus clementina HOM05D005178 ORTHO05D006123 2.0e-21 107.1 240 42.5
Sp4g28340 Schrenkiella parvula HOM05D005178 ORTHO05D006123 2.0e-21 107.1 170 35.3
CAN.G1651.2 Capsicum annuum HOM05D005178 ORTHO05D006123 2.2e-20 103.6 166 33.7
MD01G1075000 Malus domestica HOM05D005178 ORTHO05D006123 2.2e-20 103.6 172 29.7
THA.LOC104802056 Tarenaya hassleriana HOM05D005178 ORTHO05D006123 2.2e-20 103.6 241 40.2
TWI14G0215 Tripterygium wilfordii HOM05D005178 ORTHO05D006123 2.2e-20 103.6 140 38.6
CARHR141580 Cardamine hirsuta HOM05D005178 ORTHO05D006123 3.7e-20 102.8 170 32.9
Oeu008679.1 Olea europaea HOM05D005178 ORTHO05D006123 4.8e-20 102.4 166 33.7
Sabra14G0069000 Salix brachista HOM05D005178 ORTHO05D006123 6.3e-20 102.1 165 33.3
BcaB01g02336 Brassica carinata HOM05D005178 ORTHO05D006123 1.1e-19 101.3 244 34.8
MD07G1144100 Malus domestica HOM05D005178 ORTHO05D006123 1.4e-19 100.9 240 31.2
Aa31LG1G10830 Aethionema arabicum HOM05D005178 ORTHO05D006123 1.8e-19 100.5 239 38.1
SHI13195 Sapria himalayana HOM05D005178 ORTHO05D006123 2.4e-19 100.1 237 39.2
AL6G52250 Arabidopsis lyrata HOM05D005178 ORTHO05D006123 3.1e-19 99.8 248 35.5
BolC3t16162H Brassica oleracea HOM05D005178 ORTHO05D006123 9.1e-19 98.2 244 33.6
BraA03t12361Z Brassica rapa HOM05D005178 ORTHO05D006123 9.1e-19 98.2 244 42.6
BcaC01g06846 Brassica carinata HOM05D005178 ORTHO05D006123 2.0e-18 97.1 244 33.6
A02p24280 Brassica napus HOM05D005178 ORTHO05D006123 2.7e-18 96.7 177 33.9
BraA02t07418Z Brassica rapa HOM05D005178 ORTHO05D006123 2.7e-18 96.7 177 33.9
BcaC03g16062 Brassica carinata HOM05D005178 ORTHO05D006123 3.5e-18 96.3 177 33.9
CSS0038689 Camellia sinensis var. sinensis HOM05D005178 ORTHO05D006123 4.5e-18 95.9 239 36.4
AT4G01110 Arabidopsis thaliana HOM05D005178 ORTHO05D006123 5.9e-18 95.5 173 34.7
C03p38880 Brassica napus HOM05D005178 ORTHO05D006123 5.9e-18 95.5 244 32.0
A03p31890 Brassica napus HOM05D005178 ORTHO05D006123 7.7e-18 95.1 244 33.6
Sed0019896 Sechium edule HOM05D005178 ORTHO05D006123 7.7e-18 95.1 250 35.6
C02p38280 Brassica napus HOM05D005178 ORTHO05D006123 1.7e-17 94.0 177 32.8
Sc01g0002990 Simmondsia chinensis HOM05D005178 ORTHO05D006123 2.9e-17 93.2 170 31.8
Aqoxy7G00174 Aquilegia oxysepala HOM05D005178 ORTHO05D006123 3.8e-17 92.8 171 31.0
CARHR249180 Cardamine hirsuta HOM05D005178 ORTHO05D006123 5.0e-17 92.4 248 33.9
THA.LOC104825868 Tarenaya hassleriana HOM05D005178 ORTHO05D006123 8.5e-17 91.7 251 36.7
THA.LOC104817334 Tarenaya hassleriana HOM05D005178 ORTHO05D006123 1.1e-16 91.3 170 31.8
BraA10t42331Z Brassica rapa HOM05D005178 ORTHO05D006123 1.9e-16 90.5 257 31.9
Actinidia10100 Actinidia chinensis HOM05D005178 ORTHO05D006123 2.5e-16 90.1 242 38.4
Carub.0006s3617 Capsella rubella HOM05D005178 ORTHO05D006123 3.2e-16 89.7 173 31.8
TAR375G0073 Trochodendron aralioides HOM05D005178 ORTHO05D006123 3.2e-16 89.7 101 41.6
Thhalv10009686m.g Eutrema salsugineum HOM05D005178 ORTHO05D006123 5.5e-16 89.0 173 31.8
SGA_v2.0_scaffold11G05717 Striga asiatica HOM05D005178 ORTHO05D006123 5.5e-16 89.0 235 30.6
Aa31LG5G850 Aethionema arabicum HOM05D005178 ORTHO05D006123 7.2e-16 88.6 248 26.6
AT1G01453 Arabidopsis thaliana HOM05D005178 ORTHO05D006123 7.2e-16 88.6 173 30.1
Sed0006216 Sechium edule HOM05D005178 ORTHO05D006123 7.2e-16 88.6 168 28.0
A10p00520 Brassica napus HOM05D005178 ORTHO05D006123 9.4e-16 88.2 257 31.9
SalBow5G4166 Salvia bowleyana HOM05D005178 ORTHO05D006123 1.2e-15 87.8 168 32.7
AL1G10980 Arabidopsis lyrata HOM05D005178 ORTHO05D006123 3.6e-15 86.3 247 28.7
Nitab4.5_0000522g0010 Nicotiana tabacum HOM05D005178 ORTHO05D006123 4.7e-15 85.9 147 35.4
BolC5t28844H Brassica oleracea HOM05D005178 ORTHO05D006123 6.1e-15 85.5 256 31.6
BcaB03g13583 Brassica carinata HOM05D005178 ORTHO05D006123 1.4e-14 84.3 252 32.1
C05p00550 Brassica napus HOM05D005178 ORTHO05D006123 1.4e-14 84.3 252 32.1
Carub.0001s0080 Capsella rubella HOM05D005178 ORTHO05D006123 1.8e-14 84.0 173 30.1
HPP92_026775 Vanilla planifolia HOM05D005178 ORTHO05D006123 6.8e-14 82.0 249 30.5
HPP92_005223 Vanilla planifolia HOM05D005178 ORTHO05D006123 8.8e-14 81.6 239 23.0
CARHR000970 Cardamine hirsuta HOM05D005178 ORTHO05D006123 3.4e-13 79.7 247 27.1
Peaxi162Scf00099g00191 Petunia axillaris HOM05D005178 ORTHO05D006123 4.4e-13 79.3 166 29.5
vmacro13200 Vaccinium macrocarpon HOM05D005178 ORTHO05D006123 5.7e-13 79.0 190 42.1
TAR633G1539 Trochodendron aralioides HOM05D000050 ORTHO05D010482 1.7e-12 77.4 168 27.4
Sp1g00860 Schrenkiella parvula HOM05D005178 ORTHO05D006123 7.0e-11 72.0 241 30.3
Gohir.A12G110633 Gossypium hirsutum HOM05D005178 ORTHO05D006123 1.6e-10 70.9 137 29.2
BcaC01g05083 Brassica carinata HOM05D005178 ORTHO05D006123 4.5e-10 69.3 98 37.8
TWI34G1454 Tripterygium wilfordii HOM05D002137 ORTHO05D002144 7.7e-10 68.6 164 27.4
TWI63G0827 Tripterygium wilfordii HOM05D002137 ORTHO05D002144 1.5e-08 64.3 165 24.8
TAR626G1375 Trochodendron aralioides HOM05D002137 ORTHO05D002144 1.5e-08 64.3 161 24.8
Eucgr.J02856 Eucalyptus grandis HOM05D002137 ORTHO05D002144 4.3e-08 62.8 150 24.7
Gohir.D05G043600 Gossypium hirsutum HOM05D002137 ORTHO05D002144 5.6e-08 62.4 176 25.0
Manes.11G026200 Manihot esculenta HOM05D002137 ORTHO05D002144 5.6e-08 62.4 149 24.2
PGR102G0962 Punica granatum HOM05D002137 ORTHO05D002144 1.2e-07 61.2 165 25.5
Gorai.009G044700 Gossypium raimondii HOM05D002137 ORTHO05D002144 1.6e-07 60.8 176 24.4
CiPaw.01G224800 Carya illinoinensis HOM05D002137 ORTHO05D002144 4.7e-07 59.3 149 26.2
Cpa.g.sc2.275 Carica papaya HOM05D008517 ORTHO05D010482 6.1e-07 58.9 159 25.8
FAN27G0947 Fragaria x ananassa HOM05D002137 ORTHO05D002144 6.1e-07 58.9 150 28.0
AUR62023503 Chenopodium quinoa HOM05D005178 ORTHO05D006123 8.0e-07 58.5 119 28.6
BcaC01g05087 Brassica carinata HOM05D001597 ORTHO05D001512 1.0e-06 58.2 172 27.9
Haze_18184 Corylus avellana HOM05D002137 ORTHO05D002144 1.0e-06 58.2 173 23.1
Manes.16G081000 Manihot esculenta HOM05D002137 ORTHO05D002144 1.0e-06 58.2 175 22.9
Haze_18177 Corylus avellana HOM05D002137 ORTHO05D002144 1.4e-06 57.8 173 23.1
Gorai.001G022000 Gossypium raimondii HOM05D002137 ORTHO05D002144 1.4e-06 57.8 175 22.9
Prupe.1G411400 Prunus persica HOM05D002137 ORTHO05D002144 1.8e-06 57.4 173 24.3
AUR62004447 Chenopodium quinoa HOM05D005178 ORTHO05D006123 2.3e-06 57.0 119 28.6
GSVIVG01016858001 Vitis vinifera HOM05D002137 ORTHO05D002144 2.3e-06 57.0 148 23.0
CiPaw.02G139800 Carya illinoinensis HOM05D002137 ORTHO05D002144 3.0e-06 56.6 149 26.8
FAN20G1893 Fragaria x ananassa HOM05D002137 ORTHO05D002144 3.0e-06 56.6 150 27.3
CSS0025872 Camellia sinensis var. sinensis HOM05D002137 ORTHO05D002144 4.0e-06 56.2 146 22.6
ClCG05G017880 Citrullus lanatus HOM05D002137 ORTHO05D002144 4.0e-06 56.2 158 26.6
Sabra18G0048400 Salix brachista HOM05D002137 ORTHO05D002144 4.0e-06 56.2 169 23.7
Potri.006G228600 Populus trichocarpa HOM05D002137 ORTHO05D002144 5.2e-06 55.8 169 22.5
FvH4_2g31800 Fragaria vesca HOM05D002137 ORTHO05D002144 6.8e-06 55.5 150 27.3
MSTRG.4769 Avicennia marina HOM05D002137 ORTHO05D002144 8.9e-06 55.1 149 24.8
Gorai.004G287000 Gossypium raimondii HOM05D002137 ORTHO05D002144 8.9e-06 55.1 157 25.5


User provided reference genes

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